CmoCh14G007270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G007270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	30S ribosomal protein S21
Location	Cmo_Chr14 : 3724737 .. 3727335 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATCGAACTCTCGAAGTTGCGAACTCTACACTGAATTGCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCGAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGCTCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCCCAACAGGCTTCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGTCTGTTTCTAAAATTTCTTGTGGTTTCTTTTGGGATTTGTGTTTTTGGTTGTGAATTCTGTGATTGTTTGTTTGGATTTTGATTTATTTTGATTCTTCTCCTTGAATTGTTCGCGATTTGTGTTCTGTCCTTTTAGTGTTGAATTTGATTGCTAGGAAGGTAACCTGTTAGATGTATGAGAGAAAAGTAGCTTAAATCGTTGGCCTCATTAATATTGATTCTTCTTCAGTGCTCGTTGAGCTTAGCTTCCCTCGCTTCCCTTTTCCAATGGCTACCCAGTGTTTAGTGTTTATCGCGAGCACGATAACTAGTACACTAGAGGTGCGTTCTTCCCGAGAGACATGCAGATTTTTGAATCTATATTCAACCGTTATTATGAGGTAGCTGACCTTGTTGAACGATTGGTCCTAGAGTAAGAACATACTCTTGAAAAAGTGTATATCTTTGCCAATACGAACAGGGTGTAGTGTACGAAAAGGTTGTTTGAACTTGCCCCATGACGAAGCGAAAATAACTACTCGGTAAAGGACGGAGAGTCTTGCTGCTGGTCGTTGAAAATGCGATTATTGCATTCTAAACCATCTACTCTATAGAAAACTCCTCATAAAAATGTTTTGTTTTCCTCTCCAACCGACGTAGAATCTCACAATTCACCCCATTCAGGGTCCAATGTCCTCTATGGCACTCGTTCTCTTCTCCAATTGATGTGGGACCCTCTAATCCATTCCCGACTGCCTTGTGTCCACCCCCCTTCGGAGCTCAACCTTCTCGATGGTACATCGCTCAGTGTCTGGCTCTGATACTATTTGTAGCAGCCCAAGCCCACCATTAGTAGATATGGTTCTTTTTTCGAGTTTCCCTTTCAAGGTTTTTAAAACACGTCTGCTAGGGAGAGGTTTCTACACCCTTAAGAATGCTTCGTTCTCCTCTCCAATCGAGGTGGGATCTCGAGTTTCCATATTCCCCATGCATAATAAGGGACAGCTAATGCTTTCTCTGTAGGACAACCTGAGTATTGATGTTGGAATTGCTTAGCTCCCAAATAAAGAATTCGATCTTTTTGGGATATGAACCACTCTATTTTATTAAAAGACTCTGGTTCTTCATTTTGGGAGGAAGGTTAACCCAATTGTCGAACCCGACAGAATTCCTTCGACACAAAATTGGAGAAAGACCAAACTTGACAATGAATCTAAGGAGAACCCAACTCACTTATCGATCTCAAAGTACGATTAATCTTCTTATTTGAGTGAACAAAGAAACTCCATGGGTGAGGCCAATGCAACTATAGCTTTTCCGGTTGAGTGCTGAATGCCATCGAGAAGGTGCACCTTTTTTTGTTGATTAAGAATGACAAGAGATTTCTTCCTTTTTCGTTTCGTTATTATTGTATTTTGTTCTCGTAAATAGAGAATTTCACCGAACATCTTATATCTCGAAACCAAGTACACCATTACTCGAGATGGAAGATGGCTGTAGAAAAACGTCTTATTAAGTGAATTCTTGAGGCCCCATTAGCTAATTACAACGTTTGTGATGGGAAAATGGATATCATTTATGCGCTAAGGTGTTTGATGAAACTGAGTTATGGTTTGGTTGATGAACAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGACGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAACCCAATCCAATCCAATCCAATACAATCCAAAACTTCAGCCTCACCCCAATGTTTTAATGTTTTCTGCTCATCTCTTGATTTTGGGAAGCTGTTTGTACTCTGTAATCTAAGTTGTTTTCCATGTAATATCATCTTTAGTTGACAAGTTTCTTGCAACATTCCTTTTGAATAAGTAGATGTAATTCATTGTGTTTCGATCAAATAATCATTTCTCGACTCGTAAGGTGAAAACATAGTGGGTTGATATTGTCGACTTGATGATTATGCCTCCTATGGTGTTCTAAAGATCCGGTGACCTTTCTGAGGTTATCGTACGAGATGTAGATATAATCAACTAATGTTGAACTAAAACAGATCGGAATGTTTACACTCCAAATTATTTACTATTGCAAA

mRNA sequence

CAAATCGAACTCTCGAAGTTGCGAACTCTACACTGAATTGCCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCGAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGCTCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCCCAACAGGCTTCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGACGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAACCCAATCCAATCCAATCCAATACAATCCAAAACTTCAGCCTCACCCCAATGTTTTAATGTTTTCTGCTCATCTCTTGATTTTGGGAAGCTGTTTGTACTCTGTAATCTAAGTTGTTTTCCATGTAATATCATCTTTAGTTGACAAGTTTCTTGCAACATTCCTTTTGAATAAGTAGATGTAATTCATTGTGTTTCGATCAAATAATCATTTCTCGACTCGTAAGGTGAAAACATAGTGGGTTGATATTGTCGACTTGATGATTATGCCTCCTATGGTGTTCTAAAGATCCGGTGACCTTTCTGAGGTTATCGTACGAGATGTAGATATAATCAACTAATGTTGAACTAAAACAGATCGGAATGTTTACACTCCAAATTATTTACTATTGCAAA

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCGAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGCTCAATTTCAGACACTAAAATCCAGAGATGGATCGGTTGCTCTAAGCCCCCAACAGGCTTCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTTTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATGTTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAGGACAAGCAGGACGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAA

Homology

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BLAST of CmoCh14G007270 vs. Swiss-Prot
Match: RR21_SPIOL (30S ribosomal protein S21, chloroplastic (Fragment) OS=Spinacia oleracea GN=rps21 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1


Query: 83  FRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 118
           FRSAYNVQV+VDDNE EERLLNRFRREVMRAGVIQ
Sbjct: 1   FRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQ 35

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BLAST of CmoCh14G007270 vs. TrEMBL
Match: A0A0A0LDL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.2e-78
Identity = 161/182 (88.46%), Postives = 169/182 (92.86%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIAS-PSPANQAAAQFQTLKSRDGSVALSPQQASKH 60
           MASLSSFFSFLLPSKPPPPKP QP IAS PSP+N AA QFQTLKSRDGSVAL+PQQ   H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPE-EG 180
           KRR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPE E 
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180

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BLAST of CmoCh14G007270 vs. TrEMBL
Match: Q8VWX5_CUCSA (Ribosome-like protein (Fragment) OS=Cucumis sativus GN=rpo1 PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.2e-78
Identity = 161/182 (88.46%), Postives = 169/182 (92.86%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIAS-PSPANQAAAQFQTLKSRDGSVALSPQQASKH 60
           MASLSSFFSFLLPSKPPPPKP QP IAS PSP+N AA QFQTLKSRDGSVAL+PQQ   H
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPE-EG 180
           KRR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPE E 
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

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BLAST of CmoCh14G007270 vs. TrEMBL
Match: A0A059APZ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01653 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.2e-46
Identity = 114/185 (61.62%), Postives = 135/185 (72.97%), Query Frame = 1


Query: 2   ASLSSFFSFLLPSKPP----PPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAS 61
           +SL  F SFLLPSKPP    PP P+  L  SPSPA   A +      R+ ++   P Q  
Sbjct: 3   SSLPGFLSFLLPSKPPLPPPPPPPVLSLSTSPSPAPSQAIR---KSHRESALPAPPGQ-- 62

Query: 62  KHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 121
              EP ++EL+SV+CPSLA+ANT+FFRSAYNVQ+IV DNEPEERLLNRFRREVM+AGVIQ
Sbjct: 63  ---EPPTSELSSVMCPSLAYANTLFFRSAYNVQLIVADNEPEERLLNRFRREVMKAGVIQ 122

Query: 122 ECKRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADD-DNWDLPE 181
           ECKRR+FFEN  D KKRKSREAAKRNR+RRP  R   Q+K +   +K+  D+ DNWDLPE
Sbjct: 123 ECKRRRFFENAQDEKKRKSREAAKRNRKRRPFSRAASQNKDETATSKKSNDEGDNWDLPE 179

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BLAST of CmoCh14G007270 vs. TrEMBL
Match: A0A0B0PID3_GOSAR (30S ribosomal S21, chloroplastic OS=Gossypium arboreum GN=F383_31462 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.2e-46
Identity = 113/180 (62.78%), Postives = 131/180 (72.78%), Query Frame = 1


Query: 3   SLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHSEP 62
           SLS+FFSFLLP  P PPK       +P   N  +   Q  K+   S +    Q+S     
Sbjct: 6   SLSNFFSFLLPPNPSPPK-------APPALNSLSLSSQKPKNAPLSWSAPEDQSSS---- 65

Query: 63  LSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRR 122
           LS EL+SVICPSLA ANT+FF+SAYN+QVIVDDNEPEERLLNRFRREVM+AGVIQECKRR
Sbjct: 66  LSTELSSVICPSLANANTLFFKSAYNIQVIVDDNEPEERLLNRFRREVMKAGVIQECKRR 125

Query: 123 KFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATK-QEADDDNWDLPEEGIPY 182
           +FFEN  D KKRKSREAAKRNRRRRPQ RF+  +KQ+V   K  E D+DNWD+P E +PY
Sbjct: 126 RFFENKQDEKKRKSREAAKRNRRRRPQARFSQPNKQEVSTKKGDEDDEDNWDMPNEALPY 174

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BLAST of CmoCh14G007270 vs. TrEMBL
Match: A0A061EDT6_THECC (Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_017179 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.5e-46
Identity = 112/180 (62.22%), Postives = 134/180 (74.44%), Query Frame = 1


Query: 3   SLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHSEP 62
           SLS+F SFLLPS PPPP P        +P N      Q  K+   SV+    Q+S     
Sbjct: 6   SLSNFLSFLLPSNPPPPPP------KAAPLNNLYLSSQKPKNTFLSVSAQEDQSSS---- 65

Query: 63  LSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRR 122
           LS EL++VICPSLA+ANT+FF+SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRR
Sbjct: 66  LSTELSAVICPSLAYANTLFFKSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRR 125

Query: 123 KFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEAD-DDNWDLPEEGIPY 182
           +FFEN  D KKRKSREAAKRNRRRRPQ R +  +KQ+V + K++ D +DNW++P+  +PY
Sbjct: 126 RFFENKQDEKKRKSREAAKRNRRRRPQARSSLPNKQEVSSKKRDDDEEDNWEMPDGDLPY 175

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BLAST of CmoCh14G007270 vs. TAIR10
Match: AT3G27160.1 (AT3G27160.1 Ribosomal protein S21 family protein)

HSP 1 Score: 159.5 bits (402), Expect = 2.0e-39
Identity = 93/186 (50.00%), Postives = 129/186 (69.35%), Query Frame = 1


Query: 3   SLSSFFSFLLP----SKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASK 62
           SL+SF SF+ P    +KP PP    P +  PSP        Q  ++     +++ ++ S 
Sbjct: 6   SLTSFISFISPFKSQTKPTPP----PNLTLPSPTIS-----QRRRNDLAIESMAVEETSS 65

Query: 63  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 122
            +  LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQE
Sbjct: 66  TASSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQE 125

Query: 123 CKRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPAT----KQEADDDNWDL 181
           CKRR++FEN  D KKR++R+AAKRN++RRPQ RFT + +++  A     K++ ++DNW++
Sbjct: 126 CKRRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEM 182

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BLAST of CmoCh14G007270 vs. TAIR10
Match: AT5G63300.2 (AT5G63300.2 Ribosomal protein S21 family protein)

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-17
Identity = 60/147 (40.82%), Postives = 90/147 (61.22%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 60
           + SLS   S LL SKPP P  L+P I  PS  +   +Q  ++ ++           ++H 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPSSVSARTSQHLSMTTKI--------LTAEHD 65

Query: 61  EPLSAELASVICPSLAFANTMFFRSAY-NVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           + ++     V  PSLA AN +FF+S+Y NV+V+  D E EE+L+N F+R   RAGV+QE 
Sbjct: 66  DVINR----VAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQES 125

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRR 147
           +RR+FFE+  + K RK++EAAK+ R+R
Sbjct: 126 RRRRFFESSLEKKTRKTKEAAKKYRKR 139

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BLAST of CmoCh14G007270 vs. NCBI nr
Match: gi|659098339|ref|XP_008450090.1| (PREDICTED: uncharacterized protein LOC103491780 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 2.9e-80
Identity = 166/183 (90.71%), Postives = 170/183 (92.90%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIAS-PSPANQAAAQFQTLKSRDGSVALSPQQASKH 60
           MASLSSFFSFLLPSKPPPPKP QPLIAS PSP N AAAQFQTLKSRDGSVAL PQQ   H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEG- 180
           KRR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPEE  
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 180

Query: 181 IPY 182
           IPY
Sbjct: 181 IPY 183

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BLAST of CmoCh14G007270 vs. NCBI nr
Match: gi|449455866|ref|XP_004145671.1| (PREDICTED: uncharacterized protein LOC101216973 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 4.6e-78
Identity = 161/182 (88.46%), Postives = 169/182 (92.86%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIAS-PSPANQAAAQFQTLKSRDGSVALSPQQASKH 60
           MASLSSFFSFLLPSKPPPPKP QP IAS PSP+N AA QFQTLKSRDGSVAL+PQQ   H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPE-EG 180
           KRR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPE E 
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180

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BLAST of CmoCh14G007270 vs. NCBI nr
Match: gi|188036222|pdb|3BBN|U (Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome.)

HSP 1 Score: 299.3 bits (765), Expect = 4.6e-78
Identity = 161/182 (88.46%), Postives = 169/182 (92.86%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIAS-PSPANQAAAQFQTLKSRDGSVALSPQQASKH 60
           MASLSSFFSFLLPSKPPPPKP QP IAS PSP+N AA QFQTLKSRDGSVAL+PQQ   H
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPE-EG 180
           KRR+FFEN  DV+KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPE E 
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

[Close]

BLAST of CmoCh14G007270 vs. NCBI nr
Match: gi|747101469|ref|XP_011098868.1| (PREDICTED: uncharacterized protein LOC105177419 [Sesamum indicum])

HSP 1 Score: 195.7 bits (496), Expect = 7.1e-47
Identity = 112/181 (61.88%), Postives = 130/181 (71.82%), Query Frame = 1


Query: 2   ASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHSE 61
           +S+++ FSF  PSKPPPP P  P    PS  +  AA   +  S  G   L     ++   
Sbjct: 4   SSIANLFSFFAPSKPPPPSPTSPPKFPPSHLSATAAPSAS-SSHPGLAPLVLSNEAQSLP 63

Query: 62  PLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKR 121
             SA++ SV+CPSLA+ANTMFFRSAYNVQVIVDDNEPEE+LL RFRREVMRAGVIQECKR
Sbjct: 64  SCSADVMSVVCPSLAYANTMFFRSAYNVQVIVDDNEPEEKLLGRFRREVMRAGVIQECKR 123

Query: 122 RKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADD-DNWDLPEEGIP 181
           R+FFEN  D KKRKSREAAKRNRRRRPQ R  PQD+Q+    K+  DD DNWDLPE  +P
Sbjct: 124 RRFFENKQDEKKRKSREAAKRNRRRRPQARTGPQDRQETSQNKKGNDDEDNWDLPEGDLP 183

[Close]

BLAST of CmoCh14G007270 vs. NCBI nr
Match: gi|702464804|ref|XP_010029006.1| (PREDICTED: WAS protein family homolog 1-like [Eucalyptus grandis])

HSP 1 Score: 193.0 bits (489), Expect = 4.6e-46
Identity = 114/185 (61.62%), Postives = 135/185 (72.97%), Query Frame = 1


Query: 2   ASLSSFFSFLLPSKPP----PPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAS 61
           +SL  F SFLLPSKPP    PP P+  L  SPSPA   A +      R+ ++   P Q  
Sbjct: 3   SSLPGFLSFLLPSKPPLPPPPPPPVLSLSTSPSPAPSQAIR---KSHRESALPAPPGQ-- 62

Query: 62  KHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 121
              EP ++EL+SV+CPSLA+ANT+FFRSAYNVQ+IV DNEPEERLLNRFRREVM+AGVIQ
Sbjct: 63  ---EPPTSELSSVMCPSLAYANTLFFRSAYNVQLIVADNEPEERLLNRFRREVMKAGVIQ 122

Query: 122 ECKRRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADD-DNWDLPE 181
           ECKRR+FFEN  D KKRKSREAAKRNR+RRP  R   Q+K +   +K+  D+ DNWDLPE
Sbjct: 123 ECKRRRFFENAQDEKKRKSREAAKRNRKRRPFSRAASQNKDETATSKKSNDEGDNWDLPE 179

The following BLAST results are available for this feature:

BLAST of CmoCh14G007270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR21_SPIOL	1.1e-10	94.29	30S ribosomal protein S21, chloroplastic (Fragment) OS=Spinacia oleracea GN=rps2...	[more]

BLAST of CmoCh14G007270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDL7_CUCSA	3.2e-78	88.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G588450 PE=3 SV=1	[more]
Q8VWX5_CUCSA	3.2e-78	88.46	Ribosome-like protein (Fragment) OS=Cucumis sativus GN=rpo1 PE=2 SV=1	[more]
A0A059APZ0_EUCGR	3.2e-46	61.62	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01653 PE=3 SV=1	[more]
A0A0B0PID3_GOSAR	3.2e-46	62.78	30S ribosomal S21, chloroplastic OS=Gossypium arboreum GN=F383_31462 PE=3 SV=1	[more]
A0A061EDT6_THECC	5.5e-46	62.22	Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_017179 ...	[more]

BLAST of CmoCh14G007270 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27160.1	2.0e-39	50.00	Ribosomal protein S21 family protein	[more]
AT5G63300.2	3.7e-17	40.82	Ribosomal protein S21 family protein	[more]

BLAST of CmoCh14G007270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098339\|ref\|XP_008450090.1\|	2.9e-80	90.71	PREDICTED: uncharacterized protein LOC103491780 [Cucumis melo]	[more]
gi\|449455866\|ref\|XP_004145671.1\|	4.6e-78	88.46	PREDICTED: uncharacterized protein LOC101216973 [Cucumis sativus]	[more]
gi\|188036222\|pdb\|3BBN\|U	4.6e-78	88.46	Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a C...	[more]
gi\|747101469\|ref\|XP_011098868.1\|	7.1e-47	61.88	PREDICTED: uncharacterized protein LOC105177419 [Sesamum indicum]	[more]
gi\|702464804\|ref\|XP_010029006.1\|	4.6e-46	61.62	PREDICTED: WAS protein family homolog 1-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001911	Ribosomal_S21

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G007270.1	CmoCh14G007270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRODOM	PD005521		coord: 105..130 score: 5.
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 92..100 score: 4.1E-7coord: 112..122 score: 4.1E-7coord: 124..134 score: 4.1E-7coord: 100..109 score: 4.
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 88..144 score: 14
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 90..144 score: 8.1
IPR001911	Ribosomal protein S21	TIGRFAMs	TIGR00030	TIGR00030	coord: 89..146 score: 1.1
None	No IPR available	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 1..175 score: 1.6
None	No IPR available	PANTHER	PTHR21109:SF0	28S RIBOSOMAL PROTEIN S21, MITOCHONDRIAL	coord: 1..175 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G007270	Cucsa.054210	Cucumber (Gy14) v1	cgycmoB0062
CmoCh14G007270	CmaCh11G014960	Cucurbita maxima (Rimu)	cmacmoB129
CmoCh14G007270	CmaCh14G007080	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G007270	Cla004063	Watermelon (97103) v1	cmowmB225
CmoCh14G007270	Csa3G588450	Cucumber (Chinese Long) v2	cmocuB240
CmoCh14G007270	MELO3C014875	Melon (DHL92) v3.5.1	cmomeB225
CmoCh14G007270	ClCG05G013420	Watermelon (Charleston Gray)	cmowcgB215
CmoCh14G007270	CSPI03G25620	Wild cucumber (PI 183967)	cmocpiB244
CmoCh14G007270	Lsi07G014700	Bottle gourd (USVL1VR-Ls)	cmolsiB243
CmoCh14G007270	Cp4.1LG03g06830	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G007270	Cp4.1LG04g05970	Cucurbita pepo (Zucchini)	cmocpeB251
CmoCh14G007270	MELO3C014875.2	Melon (DHL92) v3.6.1	cmomedB262
CmoCh14G007270	CsaV3_3G027140	Cucumber (Chinese Long) v3	cmocucB0284
CmoCh14G007270	Cla97C05G094970	Watermelon (97103) v2	cmowmbB240
CmoCh14G007270	Bhi01G001602	Wax gourd	cmowgoB0305
CmoCh14G007270	CsGy3G024050	Cucumber (Gy14) v2	cgybcmoB291
CmoCh14G007270	Carg09670	Silver-seed gourd	carcmoB0592
CmoCh14G007270	Carg15567	Silver-seed gourd	carcmoB0504

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G007270	CmoCh11G016220	Cucurbita moschata (Rifu)	cmocmoB092

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G007270	Cucurbita moschata (Rifu)	cmocmoB056
CmoCh14G007270	Cucurbita moschata (Rifu)	cmocmoB093
CmoCh14G007270	Watermelon (Charleston Gray)	cmowcgB223
CmoCh14G007270	Cucurbita pepo (Zucchini)	cmocpeB236
CmoCh14G007270	Cucurbita pepo (Zucchini)	cmocpeB250
CmoCh14G007270	Bottle gourd (USVL1VR-Ls)	cmolsiB239
CmoCh14G007270	Cucumber (Gy14) v2	cgybcmoB078
CmoCh14G007270	Melon (DHL92) v3.6.1	cmomedB235
CmoCh14G007270	Silver-seed gourd	carcmoB0498
CmoCh14G007270	Cucumber (Chinese Long) v3	cmocucB0261
CmoCh14G007270	Watermelon (97103) v2	cmowmbB248