ClCG05G013420 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G013420
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	30S ribosomal protein S21
Location	CG_Chr05 : 19135235 .. 19137547 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAGAGGATGATCCCATCAAGAGAGGTCTCCAATTCACAAACTTGAGAGTGAGAGAAAGAATTGGGTTTTAGGAAGAAGAAAAGTTCCATCAAAAGTCCAAAACAGGGAATAGATAAGACTGAATTCTAACCAGAGCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCACCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGTCTGTTTCTATAATTTCTTGTGCTTTCTTTTTTGGGACTTGGGACTTTGATTGATTGTGATTCTTCCCCCTTGGAACTGTTTGGAATTAATGTTCTGTTTGAATTTGATTGTTAGGAAGGAAATAGACGCCTTATCCACAATTGGCTTGGGAATTTTAAGAGTTTGTAGAGATTTATACAGGCTTACTCTTAGGGAAGTCTGGACATCAATCTGGGGCTTATCTTTTCACTCTTTCGAGCAACTTAGGTTATGGATCTCAAGTTAAAGAGAAGATAGAGTGAAAAAAATCTTTGTGTGTTATGAGTTATGAATAACAGAAATTATGTGGTCTCAATGTGGCTGGTAGTTTTTCACCTGTTAGATGTTTGATAATGTCACGAGTGTATGGGCCAATTTATGCAAACCTCAACTAATGGACAACTTGTCTAACCTAATGCTTGGGTGTCAAGGAAGCTAGTAGGATATTGATAGTAAGCTTTTTAGATGTATAAGAGAGAAGTATCTCAAATTATATTATGTGGTTGTTGGGGGAGATGCAGATTTTTTAGTTTGCATTCAACAGTTATTGTGAGGTAGCCACATTGTGGTAGTCTCATTAAATAATTTGTTGAAAGTAAAGCATATTTTTGAAAAAGTATATATTTTTATAGTCCAAATATAGTGTAGTGGGAAAGTTACCTGTTCTCATCTCAAATGTCTATAGTTTGTTTCTCCATCCTGCACCATTGTTGAACGCAGATATAAAAGTGCCATTTTTCCATTGTTCTTCTATGTGAAGTTTGAAATTTGTTTCAAAATAGCCCTTGTAGGTATTCGACATTAAAATTCAAAGTTAGAAAAGTTTGTTTGCATTTATGTGAACAAATCAAAATACATACATCGAAAAGAATAATAATAAAGACAAAGACACATGACTTAATTATGAACCATATTTGGTTTCTCCTTTCAAATTTACCCTCTCAACTTATTATTCTTTTGTTTGTGTTAAGATTTGTTCATTCGAGAGCAACATATAAGTAGACACAAACTTTTTTTGTCTATTAACTGAACGACACAAGCTTTCAAATGTTGTTCTGAAAAAAATAAATTTAATTTAAAAACTGATTACAGTGGAACTTGTAGGATTTATAGAAGACAGAATATAGCCACAGTTAAAAGAGTAATCTTTGTGTTTTGTAATTTTTCTTCCTTGTTCCCTTTCATTTTCTCGTTTTAGTTATTATTGTTTCTGGAGAACTTCAGATCCTGCAGAACCTACTACTCAAATTGGAAGATGACTGTAGAGAATGACTTGCTAGAGATTTTAATAATTTTATTGCCCAATTAAGTGAATTCTTGAGGCCCCATTAGCTAATTACAATGTTTTGTCAAAGGAAAATGGATGGGATTTATGTGCTAAGTTGTTTCATGAAATTAAGCTATGATTTGGTTGATGAACAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAGACATTCCTTATTAACCTAATCCAAAAGTTCACCCTCACCAAAATGTTTAATGTTTTCTGGTCATCTTTTGATTTTGGGAAGCTGTTAGTACTCTGTAATGTAAGTTGTTTTCCATGTAATATCTTCTTTAGTTGAGAAGTTTTTGGAATATTCCTTTTGAATAAATAGAAATGATCATTCCTTTTAC

mRNA sequence

TAGAGAGGATGATCCCATCAAGAGAGGTCTCCAATTCACAAACTTGAGAGTGAGAGAAAGAATTGGGTTTTAGGAAGAAGAAAAGTTCCATCAAAAGTCCAAAACAGGGAATAGATAAGACTGAATTCTAACCAGAGCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCACCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAGACATTCCTTATTAACCTAATCCAAAAGTTCACCCTCACCAAAATGTTTAATGTTTTCTGGTCATCTTTTGATTTTGGGAAGCTGTTAGTACTCTGTAATGTAAGTTGTTTTCCATGTAATATCTTCTTTAGTTGAGAAGTTTTTGGAATATTCCTTTTGAATAAATAGAAATGATCATTCCTTTTAC

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCACCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAGACATTCCTTATTAA

Protein sequence

MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEEDIPY

Homology

[Close]

BLAST of ClCG05G013420 vs. Swiss-Prot
Match: RR21_SPIOL (30S ribosomal protein S21, chloroplastic (Fragment) OS=Spinacia oleracea GN=rps21 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 33/35 (94.29%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 85  FRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 120
           FRSAYNVQV+VDDNE EERLLNRFRREVMRAGVIQ
Sbjct: 1   FRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQ 35

[Close]

BLAST of ClCG05G013420 vs. Swiss-Prot
Match: RS21_SYNY3 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpsU PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 92  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR 150
           QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]

BLAST of ClCG05G013420 vs. Swiss-Prot
Match: RS21_METCA (30S ribosomal protein S21 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rpsU PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1


Query: 95  VDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARF 154
           + +NEP E  + RF+R   +AGV+ E +RR ++E   + RKRK   A KR+ ++  + RF
Sbjct: 6   IRENEPFEIAIRRFKRACEKAGVLSEVRRREYYEKPTEERKRKAAAAIKRHLKKLSRERF 65

Query: 155 TPQN 159
             QN
Sbjct: 66  ALQN 69

[Close]

BLAST of ClCG05G013420 vs. Swiss-Prot
Match: RS21_THISH (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN=rpsU PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1


Query: 93  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 149
           V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK   A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]

BLAST of ClCG05G013420 vs. Swiss-Prot
Match: RS21_MICAN (30S ribosomal protein S21 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsU PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-06
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 92  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR 150
           QV+V  NE  E  L RF+R+V +AG+  + K+ +FFE  Q+ RKRK     ++  RRR
Sbjct: 3   QVVVGQNEAIESALRRFKRQVAKAGIYADIKKHQFFETPQEKRKRKAVARRRQRTRRR 60

[Close]

BLAST of ClCG05G013420 vs. TrEMBL
Match: A0A0A0LDL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.0e-95
Identity = 175/183 (95.63%), Postives = 179/183 (97.81%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N AA  QFQTLKSRDGSVAL PQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAP-QFQTLKSRDGSVALNPQQGPN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 180

Query: 181 DIP 184
           DIP
Sbjct: 181 DIP 182

[Close]

BLAST of ClCG05G013420 vs. TrEMBL
Match: Q8VWX5_CUCSA (Ribosome-like protein (Fragment) OS=Cucumis sativus GN=rpo1 PE=2 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.0e-95
Identity = 175/183 (95.63%), Postives = 179/183 (97.81%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N AA  QFQTLKSRDGSVAL PQQGPN
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAP-QFQTLKSRDGSVALNPQQGPN 67

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 68  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 127

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 128 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 187

Query: 181 DIP 184
           DIP
Sbjct: 188 DIP 189

[Close]

BLAST of ClCG05G013420 vs. TrEMBL
Match: A0A059APZ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01653 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-52
Identity = 115/185 (62.16%), Postives = 139/185 (75.14%), Query Frame = 1


Query: 2   ASLSSFFSFLLPSKPP-PPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 61
           +SL  F SFLLPSKPP PP P  P ++ S SP+   A +Q      R+ ++   P Q   
Sbjct: 3   SSLPGFLSFLLPSKPPLPPPPPPPVLSLSTSPS--PAPSQAIRKSHRESALPAPPGQ--- 62

Query: 62  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 121
             EP ++EL+SV+CPSLA+ANT+FFRSAYNVQ+IV DNEPEERLLNRFRREVM+AGVIQE
Sbjct: 63  --EPPTSELSSVMCPSLAYANTLFFRSAYNVQLIVADNEPEERLLNRFRREVMKAGVIQE 122

Query: 122 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADD-DNWDLPEE 181
           CKRRRFFEN QD +KRK+REAAKRNR+RRP +R   QNK +   +K+  D+ DNWDLP E
Sbjct: 123 CKRRRFFENAQDEKKRKSREAAKRNRKRRPFSRAASQNKDETATSKKSNDEGDNWDLP-E 179

Query: 182 EDIPY 185
           EDIPY
Sbjct: 183 EDIPY 179

[Close]

BLAST of ClCG05G013420 vs. TrEMBL
Match: A0A061EDT6_THECC (Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_017179 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 112/183 (61.20%), Postives = 139/183 (75.96%), Query Frame = 1


Query: 3   SLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHS 62
           SLS+F SFLLPS PPPP P         +P N        + K ++  +++  Q+  + S
Sbjct: 6   SLSNFLSFLLPSNPPPPPP-------KAAPLNNL---YLSSQKPKNTFLSVSAQE--DQS 65

Query: 63  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 122
             LS EL++VICPSLA+ANT+FF+SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 66  SSLSTELSAVICPSLAYANTLFFKSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 125

Query: 123 RRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEAD-DDNWDLPEEED 182
           RRRFFEN QD +KRK+REAAKRNRRRRPQAR +  NKQ+V + K++ D +DNW++P + D
Sbjct: 126 RRRFFENKQDEKKRKSREAAKRNRRRRPQARSSLPNKQEVSSKKRDDDEEDNWEMP-DGD 175

Query: 183 IPY 185
           +PY
Sbjct: 186 LPY 175

[Close]

BLAST of ClCG05G013420 vs. TrEMBL
Match: W9SIU2_9ROSA (30S ribosomal protein S21 OS=Morus notabilis GN=L484_017608 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.6e-51
Identity = 114/184 (61.96%), Postives = 132/184 (71.74%), Query Frame = 1


Query: 4   LSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHSE 63
           LS+F SF+LP+KPPP     P   S  +P          T   + GSVA          E
Sbjct: 8   LSNFLSFILPTKPPPQHKAPPPQLSLSAPHKDNKLTTTTTQYGQHGSVA--------QVE 67

Query: 64  PLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKR 123
           P  + L+SVICPSLA+ANT+FF+SAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQECKR
Sbjct: 68  PEKSSLSSVICPSLAYANTLFFKSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKR 127

Query: 124 RRFFENTQDVRKRKTREAAKRNRRRR-PQARFTPQNKQDVP--ATKQEADDDNWDLPEEE 183
           RRF EN QD +KRKTREAAKRNRRRR P  RF+ QN+Q+ P  + KQ+ D+DNWDLP E 
Sbjct: 128 RRFHENKQDEKKRKTREAAKRNRRRRPPPPRFSAQNRQETPPSSKKQDEDEDNWDLP-EG 182

Query: 184 DIPY 185
           DIPY
Sbjct: 188 DIPY 182

[Close]

BLAST of ClCG05G013420 vs. TAIR10
Match: AT3G27160.1 (AT3G27160.1 Ribosomal protein S21 family protein)

HSP 1 Score: 178.3 bits (451), Expect = 4.2e-45
Identity = 93/179 (51.96%), Postives = 123/179 (68.72%), Query Frame = 1


Query: 3   SLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHS 62
           SL+SF SF+ P K    KP  P   + PSP           ++S      +  ++  + +
Sbjct: 6   SLTSFISFISPFKSQT-KPTPPPNLTLPSPTISQRRRNDLAIES------MAVEETSSTA 65

Query: 63  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 122
             LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQECK
Sbjct: 66  SSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECK 125

Query: 123 RRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT----KQEADDDNWDLP 178
           RRR+FEN QD +KR+TR+AAKRN++RRPQARFT + +++  A     K++ ++DNW++P
Sbjct: 126 RRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMP 177

[Close]

BLAST of ClCG05G013420 vs. TAIR10
Match: AT5G63300.2 (AT5G63300.2 Ribosomal protein S21 family protein)

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-20
Identity = 62/153 (40.52%), Postives = 82/153 (53.59%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           + SLS   S LL SKPP P   +P    S   A  +      T                 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITLPSSVSARTSQHLSMTT----------------- 65

Query: 61  HSEPLSAELASVI----CPSLAFANTMFFRSAY-NVQVIVDDNEPEERLLNRFRREVMRA 120
             + L+AE   VI     PSLA AN +FF+S+Y NV+V+  D E EE+L+N F+R   RA
Sbjct: 66  --KILTAEHDDVINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRA 125

Query: 121 GVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 149
           GV+QE +RRRFFE++ + + RKT+EAAK+ R+R
Sbjct: 126 GVLQESRRRRFFESSLEKKTRKTKEAAKKYRKR 139

[Close]

BLAST of ClCG05G013420 vs. NCBI nr
Match: gi|659098339|ref|XP_008450090.1| (PREDICTED: uncharacterized protein LOC103491780 [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 5.0e-96
Identity = 179/184 (97.28%), Postives = 179/184 (97.28%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEA 180

Query: 181 DIPY 185
           DIPY
Sbjct: 181 DIPY 183

[Close]

BLAST of ClCG05G013420 vs. NCBI nr
Match: gi|449455866|ref|XP_004145671.1| (PREDICTED: uncharacterized protein LOC101216973 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 7.2e-95
Identity = 175/183 (95.63%), Postives = 179/183 (97.81%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N AA  QFQTLKSRDGSVAL PQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAP-QFQTLKSRDGSVALNPQQGPN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 180

Query: 181 DIP 184
           DIP
Sbjct: 181 DIP 182

[Close]

BLAST of ClCG05G013420 vs. NCBI nr
Match: gi|188036222|pdb|3BBN|U (Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome.)

HSP 1 Score: 355.1 bits (910), Expect = 7.2e-95
Identity = 175/183 (95.63%), Postives = 179/183 (97.81%), Query Frame = 1


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N AA  QFQTLKSRDGSVAL PQQGPN
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAP-QFQTLKSRDGSVALNPQQGPN 67

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 68  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 127

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 128 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 187

Query: 181 DIP 184
           DIP
Sbjct: 188 DIP 189

[Close]

BLAST of ClCG05G013420 vs. NCBI nr
Match: gi|1021530591|ref|XP_016162248.1| (PREDICTED: chloride channel protein 1 [Arachis ipaensis])

HSP 1 Score: 218.0 bits (554), Expect = 1.4e-53
Identity = 118/185 (63.78%), Postives = 137/185 (74.05%), Query Frame = 1


Query: 2   ASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNH 61
           +SLS+FFSFLLPSK PPP P       SP P   A   + +   +    VA K Q  P+ 
Sbjct: 6   SSLSNFFSFLLPSKQPPPSP-------SPPPPQIAITTRHKPTPNSVSLVAQKQQHDPSS 65

Query: 62  SEPLSA-ELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 121
           S   S+ EL+SV+CPSLA ANT+FFRSAYNVQV+VDDNEPEERLLNRFRREVM+AGVIQE
Sbjct: 66  SSSSSSSELSSVMCPSLAHANTLFFRSAYNVQVVVDDNEPEERLLNRFRREVMKAGVIQE 125

Query: 122 CKRRRFFENTQDVRKRKTREAAKRNRR-RRPQARFTPQNKQDV--PATKQEADDDNWDLP 181
           CKRRRFFEN QD +KRK+REAAKRN+R RRP  R   QN+QDV    TK+E DDDNWDLP
Sbjct: 126 CKRRRFFENKQDQKKRKSREAAKRNKRSRRPPMRSPMQNRQDVLSTTTKKEEDDDNWDLP 183

Query: 182 EEEDI 183
           EE+ +
Sbjct: 186 EEDGL 183

[Close]

BLAST of ClCG05G013420 vs. NCBI nr
Match: gi|702464804|ref|XP_010029006.1| (PREDICTED: WAS protein family homolog 1-like [Eucalyptus grandis])

HSP 1 Score: 213.4 bits (542), Expect = 3.4e-52
Identity = 115/185 (62.16%), Postives = 139/185 (75.14%), Query Frame = 1


Query: 2   ASLSSFFSFLLPSKPP-PPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 61
           +SL  F SFLLPSKPP PP P  P ++ S SP+   A +Q      R+ ++   P Q   
Sbjct: 3   SSLPGFLSFLLPSKPPLPPPPPPPVLSLSTSPS--PAPSQAIRKSHRESALPAPPGQ--- 62

Query: 62  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 121
             EP ++EL+SV+CPSLA+ANT+FFRSAYNVQ+IV DNEPEERLLNRFRREVM+AGVIQE
Sbjct: 63  --EPPTSELSSVMCPSLAYANTLFFRSAYNVQLIVADNEPEERLLNRFRREVMKAGVIQE 122

Query: 122 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADD-DNWDLPEE 181
           CKRRRFFEN QD +KRK+REAAKRNR+RRP +R   QNK +   +K+  D+ DNWDLP E
Sbjct: 123 CKRRRFFENAQDEKKRKSREAAKRNRKRRPFSRAASQNKDETATSKKSNDEGDNWDLP-E 179

Query: 182 EDIPY 185
           EDIPY
Sbjct: 183 EDIPY 179

The following BLAST results are available for this feature:

BLAST of ClCG05G013420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR21_SPIOL	1.4e-10	94.29	30S ribosomal protein S21, chloroplastic (Fragment) OS=Spinacia oleracea GN=rps2...	[more]
RS21_SYNY3	1.3e-06	46.55	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rps...	[more]
RS21_METCA	2.1e-06	39.06	30S ribosomal protein S21 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
RS21_THISH	2.1e-06	46.43	30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN...	[more]
RS21_MICAN	3.6e-06	43.10	30S ribosomal protein S21 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsU PE...	[more]

BLAST of ClCG05G013420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDL7_CUCSA	5.0e-95	95.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G588450 PE=3 SV=1	[more]
Q8VWX5_CUCSA	5.0e-95	95.63	Ribosome-like protein (Fragment) OS=Cucumis sativus GN=rpo1 PE=2 SV=1	[more]
A0A059APZ0_EUCGR	2.3e-52	62.16	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01653 PE=3 SV=1	[more]
A0A061EDT6_THECC	1.5e-51	61.20	Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_017179 ...	[more]
W9SIU2_9ROSA	2.6e-51	61.96	30S ribosomal protein S21 OS=Morus notabilis GN=L484_017608 PE=3 SV=1	[more]

BLAST of ClCG05G013420 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27160.1	4.2e-45	51.96	Ribosomal protein S21 family protein	[more]
AT5G63300.2	6.2e-20	40.52	Ribosomal protein S21 family protein	[more]

BLAST of ClCG05G013420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098339\|ref\|XP_008450090.1\|	5.0e-96	97.28	PREDICTED: uncharacterized protein LOC103491780 [Cucumis melo]	[more]
gi\|449455866\|ref\|XP_004145671.1\|	7.2e-95	95.63	PREDICTED: uncharacterized protein LOC101216973 [Cucumis sativus]	[more]
gi\|188036222\|pdb\|3BBN\|U	7.2e-95	95.63	Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a C...	[more]
gi\|1021530591\|ref\|XP_016162248.1\|	1.4e-53	63.78	PREDICTED: chloride channel protein 1 [Arachis ipaensis]	[more]
gi\|702464804\|ref\|XP_010029006.1\|	3.4e-52	62.16	PREDICTED: WAS protein family homolog 1-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001911	Ribosomal_S21

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0044391	ribosomal subunit
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G013420.1	ClCG05G013420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRODOM	PD005521		coord: 107..132 score: 1.
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 102..111 score: 2.5E-6coord: 94..102 score: 2.5E-6coord: 114..124 score: 2.5E-6coord: 126..136 score: 2.
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 90..146 score: 1
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 92..146 score: 3.2
IPR001911	Ribosomal protein S21	TIGRFAMs	TIGR00030	TIGR00030	coord: 91..148 score: 3.6
None	No IPR available	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 6..177 score: 4.8
None	No IPR available	PANTHER	PTHR21109:SF0	28S RIBOSOMAL PROTEIN S21, MITOCHONDRIAL	coord: 6..177 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G013420	Csa3G588450	Cucumber (Chinese Long) v2	cuwcgB232
ClCG05G013420	MELO3C014875	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G013420	Cla004063	Watermelon (97103) v1	wcgwmB285
ClCG05G013420	Cla97C05G094970	Watermelon (97103) v2	wcgwmbB229
ClCG05G013420	Bhi01G001602	Wax gourd	wcgwgoB429
ClCG05G013420	CSPI03G25620	Wild cucumber (PI 183967)	cpiwcgB239
ClCG05G013420	Cucsa.054210	Cucumber (Gy14) v1	cgywcgB043
ClCG05G013420	CmaCh11G014960	Cucurbita maxima (Rimu)	cmawcgB120
ClCG05G013420	CmaCh14G007080	Cucurbita maxima (Rimu)	cmawcgB231
ClCG05G013420	CmoCh14G007270	Cucurbita moschata (Rifu)	cmowcgB215
ClCG05G013420	CmoCh11G016220	Cucurbita moschata (Rifu)	cmowcgB112
ClCG05G013420	Lsi07G014700	Bottle gourd (USVL1VR-Ls)	lsiwcgB400
ClCG05G013420	Cp4.1LG03g06830	Cucurbita pepo (Zucchini)	cpewcgB555
ClCG05G013420	Cp4.1LG04g05970	Cucurbita pepo (Zucchini)	cpewcgB613
ClCG05G013420	CsGy3G024050	Cucumber (Gy14) v2	cgybwcgB216
ClCG05G013420	MELO3C014875.2	Melon (DHL92) v3.6.1	medwcgB425
ClCG05G013420	Carg09670	Silver-seed gourd	carwcgB0428
ClCG05G013420	Carg15567	Silver-seed gourd	carwcgB0361
ClCG05G013420	CsaV3_3G027140	Cucumber (Chinese Long) v3	cucwcgB240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G013420	Cucurbita pepo (Zucchini)	cpewcgB332
ClCG05G013420	Bottle gourd (USVL1VR-Ls)	lsiwcgB369
ClCG05G013420	Cucumber (Gy14) v2	cgybwcgB062
ClCG05G013420	Melon (DHL92) v3.6.1	medwcgB244
ClCG05G013420	Cucumber (Chinese Long) v3	cucwcgB072
ClCG05G013420	Watermelon (97103) v2	wcgwmbB236
ClCG05G013420	Watermelon (Charleston Gray)	wcgwcgB157
ClCG05G013420	Wild cucumber (PI 183967)	cpiwcgB068
ClCG05G013420	Cucumber (Chinese Long) v2	cuwcgB065
ClCG05G013420	Melon (DHL92) v3.5.1	mewcgB252
ClCG05G013420	Watermelon (97103) v1	wcgwmB310