Cla97C05G094970 (gene) Watermelon (97103) v2

Overview
NameCla97C05G094970
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description30S ribosomal protein S21
LocationCla97Chr05 : 18178241 .. 18180237 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCACCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGTCTGTTTCTATAATTTCTTGTGCTTTCTTTTTTGGGACTTGGGACTTTGATTGATTGTGATTCTTCCCCCTTGGAACTGTTTGGAATTAATGTTCTGTTTGAATTTGATTGTTAGGAAGGAAATAGACGCCTTATCCACAATTGGCTTGGGAATTTTAAGAGTTTGTAGAGATTTATACAGGCTTACTCTTAGGGAAGTCTGGACATCAATCTGGGGCTTATCTTTTCACTCTTTCGAGCAACTTAGGTTATGGATCTCAAGTTAAAGAGAAGATAGAGTGAAAAAAATCTTTGTGTGTTATGAGTTATGAATAACAGAAATTATGTGGTCTCAATGTGGCTGGTAGTTTTTCACCTGTTAGATGTTTGATAATGTCACGAGTGTATGGGCCAATTTATGCAAACCTCAACTAATGGACAACTTGTCTAACCTAATGCTTGGGTGTCAAGGAAGCTAGTAGGATATTGATAGTAAGCTTTTTAGATGTATAAGAGAGAAGTATCTCAAATTATATTATGTGGTTGTTGGGGGAGATGCAGATTTTTTAGTTTGCATTCAACAGTTATTGTGAGGTAGCCACATTGTGGTAGTCTCATTAAATAATTTGTTGAAAGTAAAGCATATTTTTGAAAAAGTATATATTTTTATAGTCCAAATATAGTGTAGTGGGAAAGTTACCTGTTCTCATCTCAAATGTCTATAGTTTGTTTCTCCATCCTGCACCATTGTTGAACGCAGATATAAAAGTGCCATTTTTCCATTGTTCTTCTATGTGAAGTTTGAAATTTGTTTCAAAATAGCCCTTGTAGGTATTCGACATTAAAATTCAAAGTTAGAAAAGTTTGTTTGCATTTATGTGAACAAATCAAAATACATACATCGAAAAGAATAATAATAAAGACAAAGACACATGACTTAATTATGAACCATATTTGGTTTCTCCTTTCAAATTTACCCTCTCAACTTATTATTCTTTTGTTTGTGTTAAGATTTGTTCATTCGAGAGCAACATATAAGTAGACACAAACTTTTTTTGTCTATTAACTGAACGACACAAGCTTTCAAATGTTGTTCTGAAAAAAATAAATTTAATTTAAAAACTGATTACAGTGGAACTTGTAGGATTTATAGAAGACAGAATATAGCCACAGTTAAAAGAGTAATCTTTGTGTTTTGTAATTTTTCTTCCTTGTTCCCTTTCATTTTCTCGTTTTAGTTATTATTGTTTCTGGAGAACTTCAGATCCTGCAGAACCTACTACTCAAATTGGAAGATGACTGTAGAGAATGACTTGCTAGAGATTTTAATAATTTTATTGCCCAATTAAGTGAATTCTTGAGGCCCCATTAGCTAATTACAATGTTTTGTCAAAGGAAAATGGATGGGATTTATGTGCTAAGTTGTTTCATGAAATTAAGCTATGATTTGGTTGATGAACAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAGACATTCCTTATTAA

mRNA sequence

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCACCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAGACATTCCTTATTAA

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCACCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAGACATTCCTTATTAA

Protein sequence

MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEEDIPY
Homology
[Close]
BLAST of Cla97C05G094970 vs. NCBI nr
Match: XP_004145671.1 (PREDICTED: uncharacterized protein LOC101216973 [Cucumis sativus] >KGN58186.1 hypothetical protein Csa_3G588450 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 3.3e-88
Identity = 175/183 (95.63%), Postives = 179/183 (97.81%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 180

Query: 181 DIP 184
           DIP
Sbjct: 181 DIP 182

[Close]
BLAST of Cla97C05G094970 vs. NCBI nr
Match: 3BBN_U (Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. >AAL35983.1 ribosome-like protein, partial [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 167/183 (91.26%), Postives = 171/183 (93.44%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLP        HQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 8   MASLSSFFSFLLPXXXXXXXXHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 67

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 68  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 127

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 128 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 187

Query: 181 DIP 184
           DIP
Sbjct: 188 DIP 189

[Close]
BLAST of Cla97C05G094970 vs. NCBI nr
Match: XP_022928327.1 (30S ribosomal protein S21, chloroplastic [Cucurbita moschata])

HSP 1 Score: 297.0 bits (759), Expect = 4.5e-77
Identity = 161/179 (89.94%), Postives = 166/179 (92.74%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLS+FFSFLLPSKPPPPKP QPFIA SPSPA Q +AAQFQTLKSRD SV+LKP QG N
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSPATQ-SAAQFQTLKSRDESVSLKPLQGSN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLL RFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 180
           CKRRR+FENTQD RKRKTREAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE
Sbjct: 121 CKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE 177

[Close]
BLAST of Cla97C05G094970 vs. NCBI nr
Match: XP_022982709.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 294.3 bits (752), Expect = 2.9e-76
Identity = 162/184 (88.04%), Postives = 167/184 (90.76%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKP QP IA SPSPANQ AAAQFQTLKSRDGSVAL PQQ P 
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIA-SPSPANQ-AAAQFQTLKSRDGSVALSPQQAPK 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRR+FFEN  D++KRK+REAAKR     PQ RFTPQ+KQDVPATKQEADDDNWDLP EE
Sbjct: 121 CKRRKFFENPHDIKKRKSREAAKRXXXXXPQQRFTPQDKQDVPATKQEADDDNWDLP-EE 180

Query: 181 DIPY 185
            IPY
Sbjct: 181 GIPY 181

[Close]
BLAST of Cla97C05G094970 vs. NCBI nr
Match: XP_022989729.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 158/179 (88.27%), Postives = 163/179 (91.06%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLS+FFSFLLPSKPPPPKP QPFIA SPSP     A QFQTLKSRD SV+LKP QGP+
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSP-----ATQFQTLKSRDESVSLKPLQGPS 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLL RFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 180
           CKRRR+FENTQD RKRKTREAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE
Sbjct: 121 CKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE 173

[Close]
BLAST of Cla97C05G094970 vs. TrEMBL
Match: tr|A0A0A0LDL7|A0A0A0LDL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 2.2e-88
Identity = 175/183 (95.63%), Postives = 179/183 (97.81%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 180

Query: 181 DIP 184
           DIP
Sbjct: 181 DIP 182

[Close]
BLAST of Cla97C05G094970 vs. TrEMBL
Match: tr|Q8VWX5|Q8VWX5_CUCSA (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 8.9e-82
Identity = 167/183 (91.26%), Postives = 171/183 (93.44%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLP        HQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 8   MASLSSFFSFLLPXXXXXXXXHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 67

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 68  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 127

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 128 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 187

Query: 181 DIP 184
           DIP
Sbjct: 188 DIP 189

[Close]
BLAST of Cla97C05G094970 vs. TrEMBL
Match: tr|A0A1S3BNG4|A0A1S3BNG4_CUCME (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.4e-74
Identity = 160/184 (86.96%), Postives = 160/184 (86.96%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLS                    IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 49  MASLSXXXXXXXXXXXXXXXXXXXLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 108

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 109 HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 168

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 
Sbjct: 169 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEA 228

Query: 181 DIPY 185
           DIPY
Sbjct: 229 DIPY 231

[Close]
BLAST of Cla97C05G094970 vs. TrEMBL
Match: tr|I3RZW2|I3RZW2_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.9e-41
Identity = 106/179 (59.22%), Postives = 126/179 (70.39%), Query Frame = 0 

Query: 2   ASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNH 61
           +SL +F SFLLP+K P P P     +SSP P++        TLK    S        P  
Sbjct: 6   SSLPNFLSFLLPTKQPSPPPQLNLPSSSPLPSH--------TLKMMKPSHNSASPTTPRR 65

Query: 62  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 121
             P   EL+SV+CPSLA++NT+FFRSAYNVQV+V + E EERLLNRFRREVM+AGVIQEC
Sbjct: 66  DGPSCDELSSVVCPSLAYSNTLFFRSAYNVQVVVGEEEGEERLLNRFRREVMKAGVIQEC 125

Query: 122 KRRRFFENTQDVRKRKTREAAKR-NRRRRPQARFTPQNKQDVP-ATKQEADDDNWDLPE 179
           KRRRFFEN QD +KRK R+AAKR +R RRP  +F+ QNKQDVP  TK+  DDDNWDLPE
Sbjct: 126 KRRRFFENKQDEKKRKHRDAAKRASRARRPFTKFSAQNKQDVPTTTKKVKDDDNWDLPE 176

[Close]
BLAST of Cla97C05G094970 vs. TrEMBL
Match: tr|A0A1J6KXQ4|A0A1J6KXQ4_NICAT (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_30880 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.1e-34
Identity = 97/190 (51.05%), Postives = 126/190 (66.32%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           ++S+++ FSF  PSKPPPPK               A+  QF +L S D   +  P    N
Sbjct: 3   VSSIANLFSFFTPSKPPPPK---------------ASPLQF-SLPSADSLSSSTPIN--N 62

Query: 61  HSEPLS-----AELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRA 120
           H  PLS     +++ +V+CPSLA ANT++FRS YNVQVIVDDNE EE+L+ RFRREVMRA
Sbjct: 63  HKYPLSLSCSNSDVTAVVCPSLANANTLYFRSGYNVQVIVDDNEHEEKLVGRFRREVMRA 122

Query: 121 GVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEAD-DDNW 180
           GVIQECKRRR+FEN  D  KRK+REAAKRNR+RR   R    +KQ+    K++ + +DNW
Sbjct: 123 GVIQECKRRRYFENKHDKLKRKSREAAKRNRKRRGPPRNFSDDKQEASKNKRDDEGEDNW 173

Query: 181 DLPEEEDIPY 185
           +LP +  +PY
Sbjct: 183 ELP-DGGLPY 173

[Close]
BLAST of Cla97C05G094970 vs. Swiss-Prot
Match: sp|P82024|RR21_SPIOL (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-20
Identity = 72/179 (40.22%), Postives = 93/179 (51.96%), Query Frame = 0 

Query: 2   ASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNH 61
           +SL +F S L PS    P    P   +  S ++Q  +    + K  + ++A K       
Sbjct: 5   SSLLNFLSPLFPSNTSLPPSSNPKFPNPNSLSSQQNSISISSKKHENAAIAKK------- 64

Query: 62  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 121
            E    +L +V+CPSLAF+NT++FRSAYNVQV+VDDNE EERLLNRFRREVMRAGVIQEC
Sbjct: 65  -EEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQEC 124

Query: 122 KRRRFFENTQDVRKRKTREAAKRNRRRR--PQARFTPQNKQDVPATKQEADDDNWDLPE 179
           K                             P     P  ++     K+E D DNWD+PE
Sbjct: 125 KXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPFRGPFPGKEEATKVDKKEDDGDNWDMPE 175

[Close]
BLAST of Cla97C05G094970 vs. Swiss-Prot
Match: sp|P48949|RS21_SYNY3 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-04
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 92  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR 150
           QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]
BLAST of Cla97C05G094970 vs. Swiss-Prot
Match: sp|B8GPU0|RS21_THISH (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.5e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 93  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 149
           V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK   A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]
BLAST of Cla97C05G094970 vs. TAIR10
Match: AT3G27160.1 (Ribosomal protein S21 family protein)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-22
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 0 

Query: 3   SLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHS 62
           SL+SF SF+ P K    KP  P   + PSP           ++S      +  ++  + +
Sbjct: 6   SLTSFISFISPFK-SQTKPTPPPNLTLPSPTISQRRRNDLAIES------MAVEETSSTA 65

Query: 63  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 122
             LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQECK
Sbjct: 66  SSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECK 118

[Close]
BLAST of Cla97C05G094970 vs. TAIR10
Match: AT5G63300.2 (Ribosomal protein S21 family protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08
Identity = 47/125 (37.60%), Postives = 61/125 (48.80%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           + SLS   S LL SKPP P   +P    S   A  +      T                 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITLPSSVSARTSQHLSMTT----------------- 65

Query: 61  HSEPLSAELASVI----CPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRA 120
             + L+AE   VI     PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RA
Sbjct: 66  --KILTAEHDDVINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRA 111

The following BLAST results are available for this feature:
BLAST of Cla97C05G094970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145671.13.3e-8895.63PREDICTED: uncharacterized protein LOC101216973 [Cucumis sativus] >KGN58186.1 hy... [more]
3BBN_U1.4e-8191.26Chain U, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a C... [more]
XP_022928327.14.5e-7789.9430S ribosomal protein S21, chloroplastic [Cucurbita moschata][more]
XP_022982709.12.9e-7688.0430S ribosomal protein S21, chloroplastic-like [Cucurbita maxima][more]
XP_022989729.11.9e-7588.2730S ribosomal protein S21, chloroplastic-like [Cucurbita maxima][more]
BLAST of Cla97C05G094970 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LDL7|A0A0A0LDL7_CUCSA2.2e-8895.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1[more]
tr|Q8VWX5|Q8VWX5_CUCSA8.9e-8291.26Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1[more]
tr|A0A1S3BNG4|A0A1S3BNG4_CUCME1.4e-7486.96uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=... [more]
tr|I3RZW2|I3RZW2_LOTJA5.9e-4159.22Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
tr|A0A1J6KXQ4|A0A1J6KXQ4_NICAT9.1e-3451.05Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_30880 PE=3 SV=1[more]
BLAST of Cla97C05G094970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P82024|RR21_SPIOL7.7e-2040.2230S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P... [more]
sp|P48949|RS21_SYNY32.7e-0446.5530S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111... [more]
sp|B8GPU0|RS21_THISH4.5e-0446.4330S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX... [more]
BLAST of Cla97C05G094970 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G27160.12.3e-2251.67Ribosomal protein S21 family protein[more]
AT5G63300.21.4e-0837.60Ribosomal protein S21 family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR038380S21_sf
IPR001911Ribosomal_S21
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005840 ribosome
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0044391 ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G094970.1Cla97C05G094970.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PRINTSPR00976RIBOSOMALS21coord: 102..111
score: 43.33
coord: 94..102
score: 42.59
coord: 114..124
score: 38.64
coord: 126..136
score: 37.88
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 92..146
e-value: 3.3E-19
score: 68.2
IPR001911Ribosomal protein S21TIGRFAMTIGR00030TIGR00030coord: 91..148
e-value: 3.6E-13
score: 47.1
IPR001911Ribosomal protein S21PANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 2..184
IPR001911Ribosomal protein S21PRODOMPD005521coord: 107..132
e-value: 1.0E-6
score: 123.0
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 90..146
score: 13.87
IPR038380Ribosomal protein S21 superfamilyGENE3DG3DSA:1.20.5.1150coord: 105..143
e-value: 4.6E-7
score: 31.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..153
NoneNo IPR availablePANTHERPTHR21109:SF6PLASTID RIBOSOMAL PROTEIN S21coord: 2..184

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G094970Cla004063Watermelon (97103) v1wmwmbB207
Cla97C05G094970Csa3G588450Cucumber (Chinese Long) v2cuwmbB217
Cla97C05G094970MELO3C014875Melon (DHL92) v3.5.1mewmbB434
Cla97C05G094970ClCG05G013420Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G094970CSPI03G25620Wild cucumber (PI 183967)cpiwmbB223
Cla97C05G094970Cucsa.054210Cucumber (Gy14) v1cgywmbB041
Cla97C05G094970CmaCh14G007080Cucurbita maxima (Rimu)cmawmbB260
Cla97C05G094970CmaCh11G014960Cucurbita maxima (Rimu)cmawmbB123
Cla97C05G094970CmoCh11G016220Cucurbita moschata (Rifu)cmowmbB114
Cla97C05G094970CmoCh14G007270Cucurbita moschata (Rifu)cmowmbB240
Cla97C05G094970Lsi07G014700Bottle gourd (USVL1VR-Ls)lsiwmbB401
Cla97C05G094970CsGy3G024050Cucumber (Gy14) v2cgybwmbB208
Cla97C05G094970MELO3C014875.2Melon (DHL92) v3.6.1medwmbB429
Cla97C05G094970Carg15567Silver-seed gourdcarwmbB0387
Cla97C05G094970Carg09670Silver-seed gourdcarwmbB0459
Cla97C05G094970CsaV3_3G027140Cucumber (Chinese Long) v3cucwmbB219
Cla97C05G094970Bhi01G001602Wax gourdwgowmbB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G094970Watermelon (97103) v2wmbwmbB134
Cla97C05G094970Silver-seed gourdcarwmbB0381
Cla97C05G094970Cucumber (Gy14) v2cgybwmbB062
Cla97C05G094970Cucurbita maxima (Rimu)cmawmbB077
Cla97C05G094970Cucurbita maxima (Rimu)cmawmbB130
Cla97C05G094970Cucurbita moschata (Rifu)cmowmbB066
Cla97C05G094970Cucurbita moschata (Rifu)cmowmbB116
Cla97C05G094970Wild cucumber (PI 183967)cpiwmbB065
Cla97C05G094970Cucumber (Chinese Long) v3cucwmbB061
Cla97C05G094970Cucumber (Chinese Long) v2cuwmbB063
Cla97C05G094970Bottle gourd (USVL1VR-Ls)lsiwmbB371
Cla97C05G094970Melon (DHL92) v3.6.1medwmbB245
Cla97C05G094970Melon (DHL92) v3.5.1mewmbB258
Cla97C05G094970Watermelon (Charleston Gray)wcgwmbB267
Cla97C05G094970Watermelon (97103) v1wmwmbB401