Carg09297 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09297
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF3511 domain protein
Location	Cucurbita_argyrosperma_scaffold_018 : 444380 .. 444655 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGACAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATCGAGAGCTATTACGGGCCACCGAAGAGCCAGATTCCTGGGAAAAAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTTTCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

mRNA sequence

ATGGATGATGACAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATCGAGAGCTATTACGGGCCACCGAAGAGCCAGATTCCTGGGAAAAAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTTTCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

Coding sequence (CDS)

ATGGATGATGACAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATCGAGAGCTATTACGGGCCACCGAAGAGCCAGATTCCTGGGAAAAAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTTTCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

Protein sequence

MDDDRRGSYGSSSMQIESYYGPPKSQIPGKKDKRSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW

Homology

[Close]

BLAST of Carg09297 vs. NCBI nr
Match: KGN47609.1 (hypothetical protein Csa_6G364115 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.2e-26
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 14 MQIESYYGP-PKSQIPGKKDKRSSGSSSKSFKF-SDPEFQRKKRVASYKMYSVEGKMKGS 73
          M+IE YYGP  KSQ+  KK K +SGSSSKS++F +DPEFQRKKRVASYKMYSVEGKMKGS
Sbjct: 1  MEIEKYYGPSSKSQVSVKKGKSTSGSSSKSWRFVADPEFQRKKRVASYKMYSVEGKMKGS 60

Query: 74 FRKSFRWLKDKYTQMLYGWW 92
          FRKSFRWLKDKYTQMLYGWW
Sbjct: 61 FRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of Carg09297 vs. NCBI nr
Match: XP_015884421.1 (uncharacterized protein LOC107420071 [Ziziphus jujuba] >XP_015902649.1 uncharacterized protein LOC107435530 [Ziziphus jujuba])

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 68/119 (57.14%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 1   MDDDRRG---SYGSSSMQIESYYGPP-------------------------KSQIPGKKD 60
           M+D  R    SYG   MQ+E+YYGPP                            I  KK 
Sbjct: 1   MEDYNRSKSYSYGGGMMQMETYYGPPPGAPTSYDLRSYSASYSQTQMGYNTNRDIKFKKG 60

Query: 61  KRSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           K +SGSSS+S+ F+DPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQ++YGWW
Sbjct: 61  KSTSGSSSRSWNFTDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQVVYGWW 119

[Close]

BLAST of Carg09297 vs. NCBI nr
Match: XP_024019973.1 (uncharacterized protein LOC21384218 [Morus notabilis] >EXB55657.1 hypothetical protein L484_000591 [Morus notabilis])

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESYYGPPKS--------------------QIPGKKDKRSSG-SSS 61
           D +R  SYGS  MQI++YYGPP+S                     +  KK K +SG SSS
Sbjct: 3   DCNRSRSYGSGMMQIDNYYGPPRSFSTSHTQTQMGNDINNNNIRDLKMKKGKNASGSSSS 62

Query: 62  KSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           K + F DPEFQRKKRVASYKMYSVEGK+KGSFRKSFRWLKDKYTQ++YGWW
Sbjct: 63  KPWSFGDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of Carg09297 vs. NCBI nr
Match: XP_018807284.1 (PREDICTED: uncharacterized protein LOC108980739 [Juglans regia])

HSP 1 Score: 109.4 bits (272), Expect = 6.6e-21
Identity = 65/114 (57.02%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 3   DDRRGS--YGSSSMQIESYYGPPKSQIPG------------------------KKDKRSS 62
           +D  GS  YG  +MQ+ESYYGPP S  P                         KK K ++
Sbjct: 36  EDYNGSRRYGDWTMQMESYYGPPPSTQPTSYDLRCYSSSYAQTQMGNNRDLKLKKGKSTA 95

Query: 63  GSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGW 91
           G SSKS  F D EFQRKKRVASYKMYSVEGKMKGS R+SFRWLKDKYTQ+LYGW
Sbjct: 96  GFSSKSSAFGDREFQRKKRVASYKMYSVEGKMKGSLRRSFRWLKDKYTQVLYGW 149

[Close]

BLAST of Carg09297 vs. NCBI nr
Match: XP_021276472.1 (uncharacterized protein LOC110410882 [Herrania umbratica])

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 63/119 (52.94%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESYYGPPK----------------SQIPG------------KKDK 61
           D +R  SYG+  MQ+++Y+GPP+                SQ+              KK K
Sbjct: 3   DYNRSRSYGNGMMQLDTYHGPPRPSASYDLRCYSASYAQSQMANNYSTGNNRDFKLKKGK 62

Query: 62  RSSG-SSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
            +SG SSSKS+  +DPEFQRKKRVASYKMYSVEGK+KGS R+SFRWLKDKYTQ++YGWW
Sbjct: 63  STSGSSSSKSWSLADPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKDKYTQVVYGWW 121

[Close]

BLAST of Carg09297 vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 54/104 (51.92%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESY--------------YGPPKSQIPGKKDKRSSGSSSKSFKFSD 61
           D  R+  YG   MQI+ Y              YG  ++ I   K K  S + SKS+  +D
Sbjct: 3   DFGRQRPYGDGGMQIQPYHGNQGGDFRSYSASYGTRENNIYDVK-KEKSIARSKSWGITD 62

Query: 62  PEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           PE QRKKRVASYKMY VEGK+KGSFR SFRWLK +YTQ++YGWW
Sbjct: 63  PELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGWW 105

[Close]

BLAST of Carg09297 vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-13
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 4   DRRGSYGSSSMQ-IESY---YGPPKSQIP-GKKDKRSSGSSSKSFKFSDPEFQRKKRVAS 63
           D   S+  + MQ + SY   Y    ++IP  +  K+   SSS S+ F DP+ QRKKRV S
Sbjct: 27  DGPDSFSGNGMQDLRSYSTSYTDYPTRIPEDQNPKKGRSSSSSSWGFVDPDLQRKKRVVS 86

Query: 64  YKMYSVEGKMKGSFRKSFRWLKDKYTQML 88
           Y+ Y+VEGK+KGSFRKSF+W+KDK  ++L
Sbjct: 87  YRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

[Close]

BLAST of Carg09297 vs. TAIR10
Match: AT3G13910.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 26 QIPGKKDK---RSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKD 82
          Q+  KK K    +  ++S+S+ FSDPE +RK+RVA YK+YSVE KMKGS RKSF+W KD
Sbjct: 39 QLKIKKSKSVPNADRAASRSWSFSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFKD 97

[Close]

BLAST of Carg09297 vs. TAIR10
Match: AT1G72720.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-10
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 31  KDKRSSGSSSKSFK-FSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYG 90
           K KRS+    K FK   + E QRKKRVASY +Y VEG++KGS +KSF+W K+  +  +YG
Sbjct: 66  KSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYG 125

Query: 91  WW 92
            W
Sbjct: 126 LW 127

[Close]

BLAST of Carg09297 vs. TAIR10
Match: AT3G05725.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 57.0 bits (136), Expect = 7.0e-09
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 34  RSSGSSSKSFK--FSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYG 90
           R S S S  FK  ++DPE +RK+RVA YK+YS EGKMK + RKS++W+K + +++++G
Sbjct: 66  RRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of Carg09297 vs. TrEMBL
Match: tr|A0A0A0KFK3|A0A0A0KFK3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G364115 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.4e-26
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 14 MQIESYYGP-PKSQIPGKKDKRSSGSSSKSFKF-SDPEFQRKKRVASYKMYSVEGKMKGS 73
          M+IE YYGP  KSQ+  KK K +SGSSSKS++F +DPEFQRKKRVASYKMYSVEGKMKGS
Sbjct: 1  MEIEKYYGPSSKSQVSVKKGKSTSGSSSKSWRFVADPEFQRKKRVASYKMYSVEGKMKGS 60

Query: 74 FRKSFRWLKDKYTQMLYGWW 92
          FRKSFRWLKDKYTQMLYGWW
Sbjct: 61 FRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of Carg09297 vs. TrEMBL
Match: tr|W9R3W8|W9R3W8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000591 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-24
Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESYYGPPKS--------------------QIPGKKDKRSSG-SSS 61
           D +R  SYGS  MQI++YYGPP+S                     +  KK K +SG SSS
Sbjct: 3   DCNRSRSYGSGMMQIDNYYGPPRSFSTSHTQTQMGNDINNNNIRDLKMKKGKNASGSSSS 62

Query: 62  KSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           K + F DPEFQRKKRVASYKMYSVEGK+KGSFRKSFRWLKDKYTQ++YGWW
Sbjct: 63  KPWSFGDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of Carg09297 vs. TrEMBL
Match: tr|A0A2I4DJF6|A0A2I4DJF6_9ROSI (uncharacterized protein LOC108980739 OS=Juglans regia OX=51240 GN=LOC108980739 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-21
Identity = 65/114 (57.02%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 3   DDRRGS--YGSSSMQIESYYGPPKSQIPG------------------------KKDKRSS 62
           +D  GS  YG  +MQ+ESYYGPP S  P                         KK K ++
Sbjct: 36  EDYNGSRRYGDWTMQMESYYGPPPSTQPTSYDLRCYSSSYAQTQMGNNRDLKLKKGKSTA 95

Query: 63  GSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGW 91
           G SSKS  F D EFQRKKRVASYKMYSVEGKMKGS R+SFRWLKDKYTQ+LYGW
Sbjct: 96  GFSSKSSAFGDREFQRKKRVASYKMYSVEGKMKGSLRRSFRWLKDKYTQVLYGW 149

[Close]

BLAST of Carg09297 vs. TrEMBL
Match: tr|A0A2G9G9X5|A0A2G9G9X5_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25404 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.7e-21
Identity = 62/125 (49.60%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 1   MDDDRRGSYGSSSMQIESYYGPPKSQIPG------------------------------- 60
           M D R  SY    MQIE YYGPP    P                                
Sbjct: 1   MADYRSKSYNDGKMQIEPYYGPPSIARPNDFRSYSVSYTXXXXXXXXXXXXXXXXXXXXA 60

Query: 61  ---KKDKRSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQM 92
              KK K +SGS+ KS+ F+DPEFQRK+RVASYK+YSVEGK+KGS RKSFRWLK++YTQ+
Sbjct: 61  QNPKKGKSTSGSTLKSWSFNDPEFQRKRRVASYKVYSVEGKVKGSIRKSFRWLKNRYTQV 120

[Close]

BLAST of Carg09297 vs. TrEMBL
Match: tr|A0A1U8PUN1|A0A1U8PUN1_GOSHI (uncharacterized protein LOC107915042 OS=Gossypium hirsutum OX=3635 GN=LOC107962828 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 60/113 (53.10%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESYYGPPKSQIPG-----------------------KKDKRSSGS 61
           D +R  SYG+  MQ+++Y+G P     G                       KK K +S S
Sbjct: 3   DYNRSRSYGTGMMQLDTYHGVPPRPSSGYELRSYSVSYAQSQMANNRDFKLKKGKSTSAS 62

Query: 62  SSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           SSKS+ F+DPEFQRKKRVASYKMYSVEGK+KGS R+SFRWLK KYTQ++YGWW
Sbjct: 63  SSKSWSFADPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKVKYTQVVYGWW 115

The following BLAST results are available for this feature:

BLAST of Carg09297 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47609.1	5.2e-26	82.50	hypothetical protein Csa_6G364115 [Cucumis sativus]	[more]
XP_015884421.1	2.9e-24	57.14	uncharacterized protein LOC107420071 [Ziziphus jujuba] >XP_015902649.1 uncharact...	[more]
XP_024019973.1	2.9e-24	60.36	uncharacterized protein LOC21384218 [Morus notabilis] >EXB55657.1 hypothetical p...	[more]
XP_018807284.1	6.6e-21	57.02	PREDICTED: uncharacterized protein LOC108980739 [Juglans regia]	[more]
XP_021276472.1	1.5e-20	52.94	uncharacterized protein LOC110410882 [Herrania umbratica]	[more]

BLAST of Carg09297 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11970.1	1.5e-19	51.92	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	3.6e-13	48.31	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	1.3e-10	57.63	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	2.9e-10	51.61	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	7.0e-09	50.00	Protein of unknown function (DUF3511)	[more]

BLAST of Carg09297 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09297 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFK3\|A0A0A0KFK3_CUCSA	3.4e-26	82.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G364115 PE=4 SV=1	[more]
tr\|W9R3W8\|W9R3W8_9ROSA	1.9e-24	60.36	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000591 PE=4 SV=1	[more]
tr\|A0A2I4DJF6\|A0A2I4DJF6_9ROSI	4.4e-21	57.02	uncharacterized protein LOC108980739 OS=Juglans regia OX=51240 GN=LOC108980739 P...	[more]
tr\|A0A2G9G9X5\|A0A2G9G9X5_9LAMI	9.7e-21	49.60	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25404 P...	[more]
tr\|A0A1U8PUN1\|A0A1U8PUN1_GOSHI	1.3e-20	53.10	uncharacterized protein LOC107915042 OS=Gossypium hirsutum OX=3635 GN=LOC1079628...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09297-RA	Carg09297-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 45..89 e-value: 2.2E-25 score: 88.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR33193:SF24	SUBFAMILY NOT NAMED	coord: 19..91
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 19..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09297	Cla021990	Watermelon (97103) v1	carwmB0134
Carg09297	MELO3C011461	Melon (DHL92) v3.5.1	carmeB0142
Carg09297	ClCG08G010030	Watermelon (Charleston Gray)	carwcgB0138
Carg09297	Cucsa.056220	Cucumber (Gy14) v1	carcgyB0168
Carg09297	CmoCh12G005870	Cucurbita moschata (Rifu)	carcmoB0193
Carg09297	Cp4.1LG11g03660	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09297	CsGy6G018740	Cucumber (Gy14) v2	carcgybB0156
Carg09297	MELO3C011461.2	Melon (DHL92) v3.6.1	carmedB0146
Carg09297	Cla97C08G152870	Watermelon (97103) v2	carwmbB0150
Carg09297	Bhi04G001163	Wax gourd	carwgoB0174

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09297	Carg23950	Silver-seed gourd	carcarB166

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09297	Wax gourd	carwgoB0177
Carg09297	Silver-seed gourd	carcarB168
Carg09297	Cucurbita maxima (Rimu)	carcmaB0184
Carg09297	Cucurbita maxima (Rimu)	carcmaB0189
Carg09297	Cucurbita moschata (Rifu)	carcmoB0196
Carg09297	Cucurbita pepo (Zucchini)	carcpeB0206
Carg09297	Wild cucumber (PI 183967)	carcpiB0163
Carg09297	Cucumber (Chinese Long) v2	carcuB0158
Carg09297	Cucumber (Chinese Long) v3	carcucB0166
Carg09297	Bottle gourd (USVL1VR-Ls)	carlsiB129