Carg09297-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09297-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF3511 domain protein
Location	Cucurbita_argyrosperma_scaffold_018 : 444380 .. 444655 (-)
Sequence length	276

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGACAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATCGAGAGCTATTACGGGCCACCGAAGAGCCAGATTCCTGGGAAAAAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTTTCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

mRNA sequence

ATGGATGATGACAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATCGAGAGCTATTACGGGCCACCGAAGAGCCAGATTCCTGGGAAAAAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTTTCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

Coding sequence (CDS)

ATGGATGATGACAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATCGAGAGCTATTACGGGCCACCGAAGAGCCAGATTCCTGGGAAAAAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTTTCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

Protein sequence

MDDDRRGSYGSSSMQIESYYGPPKSQIPGKKDKRSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW

Homology

[Close]

BLAST of Carg09297-RA vs. NCBI nr
Match: KGN47609.1 (hypothetical protein Csa_6G364115 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.2e-26
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 14 MQIESYYGP-PKSQIPGKKDKRSSGSSSKSFKF-SDPEFQRKKRVASYKMYSVEGKMKGS 73
          M+IE YYGP  KSQ+  KK K +SGSSSKS++F +DPEFQRKKRVASYKMYSVEGKMKGS
Sbjct: 1  MEIEKYYGPSSKSQVSVKKGKSTSGSSSKSWRFVADPEFQRKKRVASYKMYSVEGKMKGS 60

Query: 74 FRKSFRWLKDKYTQMLYGWW 92
          FRKSFRWLKDKYTQMLYGWW
Sbjct: 61 FRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of Carg09297-RA vs. NCBI nr
Match: XP_015884421.1 (uncharacterized protein LOC107420071 [Ziziphus jujuba] >XP_015902649.1 uncharacterized protein LOC107435530 [Ziziphus jujuba])

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 68/119 (57.14%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 1   MDDDRRG---SYGSSSMQIESYYGPP-------------------------KSQIPGKKD 60
           M+D  R    SYG   MQ+E+YYGPP                            I  KK 
Sbjct: 1   MEDYNRSKSYSYGGGMMQMETYYGPPPGAPTSYDLRSYSASYSQTQMGYNTNRDIKFKKG 60

Query: 61  KRSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           K +SGSSS+S+ F+DPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQ++YGWW
Sbjct: 61  KSTSGSSSRSWNFTDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQVVYGWW 119

[Close]

BLAST of Carg09297-RA vs. NCBI nr
Match: XP_024019973.1 (uncharacterized protein LOC21384218 [Morus notabilis] >EXB55657.1 hypothetical protein L484_000591 [Morus notabilis])

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESYYGPPKS--------------------QIPGKKDKRSSG-SSS 61
           D +R  SYGS  MQI++YYGPP+S                     +  KK K +SG SSS
Sbjct: 3   DCNRSRSYGSGMMQIDNYYGPPRSFSTSHTQTQMGNDINNNNIRDLKMKKGKNASGSSSS 62

Query: 62  KSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           K + F DPEFQRKKRVASYKMYSVEGK+KGSFRKSFRWLKDKYTQ++YGWW
Sbjct: 63  KPWSFGDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of Carg09297-RA vs. NCBI nr
Match: XP_018807284.1 (PREDICTED: uncharacterized protein LOC108980739 [Juglans regia])

HSP 1 Score: 109.4 bits (272), Expect = 6.6e-21
Identity = 65/114 (57.02%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 3   DDRRGS--YGSSSMQIESYYGPPKSQIPG------------------------KKDKRSS 62
           +D  GS  YG  +MQ+ESYYGPP S  P                         KK K ++
Sbjct: 36  EDYNGSRRYGDWTMQMESYYGPPPSTQPTSYDLRCYSSSYAQTQMGNNRDLKLKKGKSTA 95

Query: 63  GSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGW 91
           G SSKS  F D EFQRKKRVASYKMYSVEGKMKGS R+SFRWLKDKYTQ+LYGW
Sbjct: 96  GFSSKSSAFGDREFQRKKRVASYKMYSVEGKMKGSLRRSFRWLKDKYTQVLYGW 149

[Close]

BLAST of Carg09297-RA vs. NCBI nr
Match: XP_021276472.1 (uncharacterized protein LOC110410882 [Herrania umbratica])

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 63/119 (52.94%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESYYGPPK----------------SQIPG------------KKDK 61
           D +R  SYG+  MQ+++Y+GPP+                SQ+              KK K
Sbjct: 3   DYNRSRSYGNGMMQLDTYHGPPRPSASYDLRCYSASYAQSQMANNYSTGNNRDFKLKKGK 62

Query: 62  RSSG-SSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
            +SG SSSKS+  +DPEFQRKKRVASYKMYSVEGK+KGS R+SFRWLKDKYTQ++YGWW
Sbjct: 63  STSGSSSSKSWSLADPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKDKYTQVVYGWW 121

[Close]

BLAST of Carg09297-RA vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 54/104 (51.92%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESY--------------YGPPKSQIPGKKDKRSSGSSSKSFKFSD 61
           D  R+  YG   MQI+ Y              YG  ++ I   K K  S + SKS+  +D
Sbjct: 3   DFGRQRPYGDGGMQIQPYHGNQGGDFRSYSASYGTRENNIYDVK-KEKSIARSKSWGITD 62

Query: 62  PEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           PE QRKKRVASYKMY VEGK+KGSFR SFRWLK +YTQ++YGWW
Sbjct: 63  PELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGWW 105

[Close]

BLAST of Carg09297-RA vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-13
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 4   DRRGSYGSSSMQ-IESY---YGPPKSQIP-GKKDKRSSGSSSKSFKFSDPEFQRKKRVAS 63
           D   S+  + MQ + SY   Y    ++IP  +  K+   SSS S+ F DP+ QRKKRV S
Sbjct: 27  DGPDSFSGNGMQDLRSYSTSYTDYPTRIPEDQNPKKGRSSSSSSWGFVDPDLQRKKRVVS 86

Query: 64  YKMYSVEGKMKGSFRKSFRWLKDKYTQML 88
           Y+ Y+VEGK+KGSFRKSF+W+KDK  ++L
Sbjct: 87  YRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

[Close]

BLAST of Carg09297-RA vs. TAIR10
Match: AT3G13910.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 26 QIPGKKDK---RSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKD 82
          Q+  KK K    +  ++S+S+ FSDPE +RK+RVA YK+YSVE KMKGS RKSF+W KD
Sbjct: 39 QLKIKKSKSVPNADRAASRSWSFSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFKD 97

[Close]

BLAST of Carg09297-RA vs. TAIR10
Match: AT1G72720.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-10
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 31  KDKRSSGSSSKSFK-FSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYG 90
           K KRS+    K FK   + E QRKKRVASY +Y VEG++KGS +KSF+W K+  +  +YG
Sbjct: 66  KSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYG 125

Query: 91  WW 92
            W
Sbjct: 126 LW 127

[Close]

BLAST of Carg09297-RA vs. TAIR10
Match: AT3G05725.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 57.0 bits (136), Expect = 7.0e-09
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 34  RSSGSSSKSFK--FSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYG 90
           R S S S  FK  ++DPE +RK+RVA YK+YS EGKMK + RKS++W+K + +++++G
Sbjct: 66  RRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of Carg09297-RA vs. TrEMBL
Match: tr|A0A0A0KFK3|A0A0A0KFK3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G364115 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.4e-26
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 14 MQIESYYGP-PKSQIPGKKDKRSSGSSSKSFKF-SDPEFQRKKRVASYKMYSVEGKMKGS 73
          M+IE YYGP  KSQ+  KK K +SGSSSKS++F +DPEFQRKKRVASYKMYSVEGKMKGS
Sbjct: 1  MEIEKYYGPSSKSQVSVKKGKSTSGSSSKSWRFVADPEFQRKKRVASYKMYSVEGKMKGS 60

Query: 74 FRKSFRWLKDKYTQMLYGWW 92
          FRKSFRWLKDKYTQMLYGWW
Sbjct: 61 FRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of Carg09297-RA vs. TrEMBL
Match: tr|W9R3W8|W9R3W8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000591 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-24
Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESYYGPPKS--------------------QIPGKKDKRSSG-SSS 61
           D +R  SYGS  MQI++YYGPP+S                     +  KK K +SG SSS
Sbjct: 3   DCNRSRSYGSGMMQIDNYYGPPRSFSTSHTQTQMGNDINNNNIRDLKMKKGKNASGSSSS 62

Query: 62  KSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           K + F DPEFQRKKRVASYKMYSVEGK+KGSFRKSFRWLKDKYTQ++YGWW
Sbjct: 63  KPWSFGDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of Carg09297-RA vs. TrEMBL
Match: tr|A0A2I4DJF6|A0A2I4DJF6_9ROSI (uncharacterized protein LOC108980739 OS=Juglans regia OX=51240 GN=LOC108980739 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-21
Identity = 65/114 (57.02%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 3   DDRRGS--YGSSSMQIESYYGPPKSQIPG------------------------KKDKRSS 62
           +D  GS  YG  +MQ+ESYYGPP S  P                         KK K ++
Sbjct: 36  EDYNGSRRYGDWTMQMESYYGPPPSTQPTSYDLRCYSSSYAQTQMGNNRDLKLKKGKSTA 95

Query: 63  GSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGW 91
           G SSKS  F D EFQRKKRVASYKMYSVEGKMKGS R+SFRWLKDKYTQ+LYGW
Sbjct: 96  GFSSKSSAFGDREFQRKKRVASYKMYSVEGKMKGSLRRSFRWLKDKYTQVLYGW 149

[Close]

BLAST of Carg09297-RA vs. TrEMBL
Match: tr|A0A2G9G9X5|A0A2G9G9X5_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25404 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.7e-21
Identity = 62/125 (49.60%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 1   MDDDRRGSYGSSSMQIESYYGPPKSQIPG------------------------------- 60
           M D R  SY    MQIE YYGPP    P                                
Sbjct: 1   MADYRSKSYNDGKMQIEPYYGPPSIARPNDFRSYSVSYTXXXXXXXXXXXXXXXXXXXXA 60

Query: 61  ---KKDKRSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQM 92
              KK K +SGS+ KS+ F+DPEFQRK+RVASYK+YSVEGK+KGS RKSFRWLK++YTQ+
Sbjct: 61  QNPKKGKSTSGSTLKSWSFNDPEFQRKRRVASYKVYSVEGKVKGSIRKSFRWLKNRYTQV 120

[Close]

BLAST of Carg09297-RA vs. TrEMBL
Match: tr|A0A1U8PUN1|A0A1U8PUN1_GOSHI (uncharacterized protein LOC107915042 OS=Gossypium hirsutum OX=3635 GN=LOC107962828 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 60/113 (53.10%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 2   DDDRRGSYGSSSMQIESYYGPPKSQIPG-----------------------KKDKRSSGS 61
           D +R  SYG+  MQ+++Y+G P     G                       KK K +S S
Sbjct: 3   DYNRSRSYGTGMMQLDTYHGVPPRPSSGYELRSYSVSYAQSQMANNRDFKLKKGKSTSAS 62

Query: 62  SSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 92
           SSKS+ F+DPEFQRKKRVASYKMYSVEGK+KGS R+SFRWLK KYTQ++YGWW
Sbjct: 63  SSKSWSFADPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKVKYTQVVYGWW 115

The following BLAST results are available for this feature:

BLAST of Carg09297-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47609.1	5.2e-26	82.50	hypothetical protein Csa_6G364115 [Cucumis sativus]	[more]
XP_015884421.1	2.9e-24	57.14	uncharacterized protein LOC107420071 [Ziziphus jujuba] >XP_015902649.1 uncharact...	[more]
XP_024019973.1	2.9e-24	60.36	uncharacterized protein LOC21384218 [Morus notabilis] >EXB55657.1 hypothetical p...	[more]
XP_018807284.1	6.6e-21	57.02	PREDICTED: uncharacterized protein LOC108980739 [Juglans regia]	[more]
XP_021276472.1	1.5e-20	52.94	uncharacterized protein LOC110410882 [Herrania umbratica]	[more]

BLAST of Carg09297-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11970.1	1.5e-19	51.92	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	3.6e-13	48.31	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	1.3e-10	57.63	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	2.9e-10	51.61	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	7.0e-09	50.00	Protein of unknown function (DUF3511)	[more]

BLAST of Carg09297-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09297-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFK3\|A0A0A0KFK3_CUCSA	3.4e-26	82.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G364115 PE=4 SV=1	[more]
tr\|W9R3W8\|W9R3W8_9ROSA	1.9e-24	60.36	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000591 PE=4 SV=1	[more]
tr\|A0A2I4DJF6\|A0A2I4DJF6_9ROSI	4.4e-21	57.02	uncharacterized protein LOC108980739 OS=Juglans regia OX=51240 GN=LOC108980739 P...	[more]
tr\|A0A2G9G9X5\|A0A2G9G9X5_9LAMI	9.7e-21	49.60	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25404 P...	[more]
tr\|A0A1U8PUN1\|A0A1U8PUN1_GOSHI	1.3e-20	53.10	uncharacterized protein LOC107915042 OS=Gossypium hirsutum OX=3635 GN=LOC1079628...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09297	Carg09297	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09297-RA.CDS.1	Carg09297-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09297-RA.exon.1	Carg09297-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09297-RA	Carg09297-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 45..89 e-value: 2.2E-25 score: 88.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR33193:SF24	SUBFAMILY NOT NAMED	coord: 19..91
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 19..91