Carg23950 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23950
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF3511 domain protein
Location	Cucurbita_argyrosperma_scaffold_253 : 116145 .. 116474 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAAGGTCGTCATGCATGGAGATAGAAAGCTATTATGGCCCTCCAAGGCCTCCTCCCCCTTCCTCCTATCCACAAACCCAGATTTCAGGTAAGAAAGGTAAAAGAACTTCTGGGTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCATCTTGTTCAACATCAAAGCCATGGAGATTTGGAGACCCTGAGTTTCAGAGGAAGAAAAGGGTTGCGAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAGGGGTCCTTCAGGAACAGCTTCAGATGGCTCAAGGGTAAGTACACCCAGATCCTTTATGGCTGGTGGTGA

mRNA sequence

ATGGATGGAAGGTCGTCATGCATGGAGATAGAAAGCTATTATGGCCCTCCAAGGCCTCCTCCCCCTTCCTCCTATCCACAAACCCAGATTTCAGGTAAGAAAGGTAAAAGAACTTCTGGGTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCATCTTGTTCAACATCAAAGCCATGGAGATTTGGAGACCCTGAGTTTCAGAGGAAGAAAAGGGTTGCGAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAGGGGTCCTTCAGGAACAGCTTCAGATGGCTCAAGGGTAAGTACACCCAGATCCTTTATGGCTGGTGGTGA

Coding sequence (CDS)

ATGGATGGAAGGTCGTCATGCATGGAGATAGAAAGCTATTATGGCCCTCCAAGGCCTCCTCCCCCTTCCTCCTATCCACAAACCCAGATTTCAGGTAAGAAAGGTAAAAGAACTTCTGGGTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCATCTTGTTCAACATCAAAGCCATGGAGATTTGGAGACCCTGAGTTTCAGAGGAAGAAAAGGGTTGCGAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAGGGGTCCTTCAGGAACAGCTTCAGATGGCTCAAGGGTAAGTACACCCAGATCCTTTATGGCTGGTGGTGA

Protein sequence

MDGRSSCMEIESYYGPPRPPPPSSYPQTQISGKKGKRTSGSTSSSSSSSSCSSSCSTSKPWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW

Homology

[Close]

BLAST of Carg23950 vs. NCBI nr
Match: XP_024019973.1 (uncharacterized protein LOC21384218 [Morus notabilis] >EXB55657.1 hypothetical protein L484_000591 [Morus notabilis])

HSP 1 Score: 114.4 bits (285), Expect = 2.5e-22
Identity = 62/117 (52.99%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 5   SSCMEIESYYGPPRPXXXSSYPQTQISG------------KKGKXXXXXXXXXXXXXXXX 64
           S  M+I++YYGPPR    +S+ QTQ+              KKGK                
Sbjct: 12  SGMMQIDNYYGPPR-SFSTSHTQTQMGNDINNNNIRDLKMKKGK--------------NA 71

Query: 65  XXXXXXKPWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
                 KPW FGDPEFQRKKRVASYKMYSVEGK+KGSFR SFRWLK KYTQ++YGWW
Sbjct: 72  SGSSSSKPWSFGDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of Carg23950 vs. NCBI nr
Match: XP_018844686.1 (PREDICTED: uncharacterized protein LOC109008879 [Juglans regia])

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 67/102 (65.69%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 8   MEIESYYGPPRPXXXSSYPQTQISGKKGKXXXXXXXXXXXXXXXXXXXXXXKPWRFGDPE 67
           M++ESYYGP  P   +SY     S    +         XXXXXXXXXXXXX  W FGDPE
Sbjct: 14  MQMESYYGPLPPRPPASYDLRSYSASYAQTQMGNNRELXXXXXXXXXXXXXXXWAFGDPE 73

Query: 68  FQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
           FQRKKRVASYKMYSVEGKMKGS R SFRWLK KYTQ++YGWW
Sbjct: 74  FQRKKRVASYKMYSVEGKMKGSLRRSFRWLKVKYTQVVYGWW 115

[Close]

BLAST of Carg23950 vs. NCBI nr
Match: KGN47609.1 (hypothetical protein Csa_6G364115 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 3.9e-20
Identity = 60/103 (58.25%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 8   MEIESYYGPPRPXXXSSYPQTQISGKKGKXXXXXXXXXXXXXXXXXXXXXXKPWRF-GDP 67
           MEIE YYGP          ++Q+S KKGK                      K WRF  DP
Sbjct: 1   MEIEKYYGPS--------SKSQVSVKKGK---------------STSGSSSKSWRFVADP 60

Query: 68  EFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
           EFQRKKRVASYKMYSVEGKMKGSFR SFRWLK KYTQ+LYGWW
Sbjct: 61  EFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of Carg23950 vs. NCBI nr
Match: XP_015884421.1 (uncharacterized protein LOC107420071 [Ziziphus jujuba] >XP_015902649.1 uncharacterized protein LOC107435530 [Ziziphus jujuba])

HSP 1 Score: 105.9 bits (263), Expect = 8.7e-20
Identity = 61/118 (51.69%), Postives = 67/118 (56.78%), Query Frame = 0


Query: 8   MEIESYYGPPRPXXXS--------SYPQTQ--------ISGKKGKXXXXXXXXXXXXXXX 67
           M++E+YYGPP     S        SY QTQ        I  KKGK               
Sbjct: 17  MQMETYYGPPPGAPTSYDLRSYSASYSQTQMGYNTNRDIKFKKGK--------------- 76

Query: 68  XXXXXXXKPWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
                  + W F DPEFQRKKRVASYKMYSVEGKMKGSFR SFRWLK KYTQ++YGWW
Sbjct: 77  STSGSSSRSWNFTDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQVVYGWW 119

[Close]

BLAST of Carg23950 vs. NCBI nr
Match: XP_012077251.1 (uncharacterized protein LOC105638122 [Jatropha curcas] >KDP34075.1 hypothetical protein JCGZ_07646 [Jatropha curcas])

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 57/117 (48.72%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 3   GRSSCMEIESYYGPPRP---------XXXSSYPQTQISGKK-GKXXXXXXXXXXXXXXXX 62
           G  + M+IESYYGPPRP            +SY Q+QI+                      
Sbjct: 15  GXXNNMQIESYYGPPRPPTTTSYDLRSYSASYAQSQIANNSYTTNSFNNGRDFKLKKGKS 74

Query: 63  XXXXXXKPWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
                 K W   DPEFQRKKRVASYKMYS EGK+KGSFR SFRWLK +YTQ++YGWW
Sbjct: 75  TSGSSSKSWILNDPEFQRKKRVASYKMYSAEGKVKGSFRRSFRWLKDRYTQVVYGWW 131

[Close]

BLAST of Carg23950 vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-19
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 59  KPWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
           K W   DPE QRKKRVASYKMY VEGK+KGSFRNSFRWLK +YTQ++YGWW
Sbjct: 55  KSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGWW 105

[Close]

BLAST of Carg23950 vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 61  WRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQIL 106
           W F DP+ QRKKRV SY+ Y+VEGK+KGSFR SF+W+K K  ++L
Sbjct: 71  WGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

[Close]

BLAST of Carg23950 vs. TAIR10
Match: AT3G62640.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-09
Identity = 23/48 (47.92%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 60  PWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYG 108
           PWR  D E +RKKR+A+YK Y++EGK+K + +  F W+K +Y+ I++G
Sbjct: 63  PWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of Carg23950 vs. TAIR10
Match: AT3G13910.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 59 KPWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLK 99
          + W F DPE +RK+RVA YK+YSVE KMKGS R SF+W K
Sbjct: 57 RSWSFSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFK 96

[Close]

BLAST of Carg23950 vs. TAIR10
Match: AT3G05725.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 25/49 (51.02%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 59  KPWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYG 108
           K W + DPE +RK+RVA YK+YS EGKMK + R S++W+K + ++I++G
Sbjct: 76  KGW-WNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of Carg23950 vs. TrEMBL
Match: tr|W9R3W8|W9R3W8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000591 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 62/117 (52.99%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 5   SSCMEIESYYGPPRPXXXSSYPQTQISG------------KKGKXXXXXXXXXXXXXXXX 64
           S  M+I++YYGPPR    +S+ QTQ+              KKGK                
Sbjct: 12  SGMMQIDNYYGPPR-SFSTSHTQTQMGNDINNNNIRDLKMKKGK--------------NA 71

Query: 65  XXXXXXKPWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
                 KPW FGDPEFQRKKRVASYKMYSVEGK+KGSFR SFRWLK KYTQ++YGWW
Sbjct: 72  SGSSSSKPWSFGDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of Carg23950 vs. TrEMBL
Match: tr|A0A2I4GLB2|A0A2I4GLB2_9ROSI (uncharacterized protein LOC109008879 OS=Juglans regia OX=51240 GN=LOC109008879 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 67/102 (65.69%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 8   MEIESYYGPPRPXXXSSYPQTQISGKKGKXXXXXXXXXXXXXXXXXXXXXXKPWRFGDPE 67
           M++ESYYGP  P   +SY     S    +         XXXXXXXXXXXXX  W FGDPE
Sbjct: 14  MQMESYYGPLPPRPPASYDLRSYSASYAQTQMGNNRELXXXXXXXXXXXXXXXWAFGDPE 73

Query: 68  FQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
           FQRKKRVASYKMYSVEGKMKGS R SFRWLK KYTQ++YGWW
Sbjct: 74  FQRKKRVASYKMYSVEGKMKGSLRRSFRWLKVKYTQVVYGWW 115

[Close]

BLAST of Carg23950 vs. TrEMBL
Match: tr|A0A0A0KFK3|A0A0A0KFK3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G364115 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 60/103 (58.25%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 8   MEIESYYGPPRPXXXSSYPQTQISGKKGKXXXXXXXXXXXXXXXXXXXXXXKPWRF-GDP 67
           MEIE YYGP          ++Q+S KKGK                      K WRF  DP
Sbjct: 1   MEIEKYYGPS--------SKSQVSVKKGK---------------STSGSSSKSWRFVADP 60

Query: 68  EFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
           EFQRKKRVASYKMYSVEGKMKGSFR SFRWLK KYTQ+LYGWW
Sbjct: 61  EFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of Carg23950 vs. TrEMBL
Match: tr|A0A251IZ93|A0A251IZ93_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G082200 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.5e-20
Identity = 66/112 (58.93%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 8   MEIESYYGPPRP----------XXXSSYPQTQISGKKGKXXXXXXXXXXXXXXXXXXXXX 67
           M++ESYYGPPRP             +SY QTQ++               XXXXXXXXXXX
Sbjct: 19  MQMESYYGPPRPPTTTTSYDLRSYSASYAQTQMANNNYTAKDFKLKKGKXXXXXXXXXXX 78

Query: 68  XKPWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
           X  W   DPEFQRKKRVASYKMYSVEGK+KGSFR SFRWLK  +TQ++YGWW
Sbjct: 79  XXXWSLADPEFQRKKRVASYKMYSVEGKVKGSFRRSFRWLKDSFTQVVYGWW 130

[Close]

BLAST of Carg23950 vs. TrEMBL
Match: tr|A0A1U8PGG1|A0A1U8PGG1_GOSHI (uncharacterized protein LOC107907022 OS=Gossypium hirsutum OX=3635 GN=LOC107958865 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.5e-20
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 8   MEIESYYGPPRP--------XXXSSYPQTQISGKKGKXXXXXXXXXXXXXXXXXXXXXXK 67
           M++++Y+GPPRP           ++Y Q+Q++                            
Sbjct: 15  MQLDTYHGPPRPSASYDLRCHSAAAYAQSQMANNYNS--GNNRDFKLKKGKSTSASSSSN 74

Query: 68  PWRFGDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKGKYTQILYGWW 110
           PW FGDPEFQRKKRVASYKMYSVEGK+KGS R SFRWLK KYTQ++YGWW
Sbjct: 75  PWSFGDPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKDKYTQVVYGWW 122

The following BLAST results are available for this feature:

BLAST of Carg23950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024019973.1	2.5e-22	52.99	uncharacterized protein LOC21384218 [Morus notabilis] >EXB55657.1 hypothetical p...	[more]
XP_018844686.1	1.8e-20	65.69	PREDICTED: uncharacterized protein LOC109008879 [Juglans regia]	[more]
KGN47609.1	3.9e-20	58.25	hypothetical protein Csa_6G364115 [Cucumis sativus]	[more]
XP_015884421.1	8.7e-20	51.69	uncharacterized protein LOC107420071 [Ziziphus jujuba] >XP_015902649.1 uncharact...	[more]
XP_012077251.1	1.1e-19	48.72	uncharacterized protein LOC105638122 [Jatropha curcas] >KDP34075.1 hypothetical ...	[more]

BLAST of Carg23950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11970.1	2.4e-19	78.43	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	1.4e-11	62.22	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	1.0e-09	47.92	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	1.3e-09	65.00	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	1.1e-08	51.02	Protein of unknown function (DUF3511)	[more]

BLAST of Carg23950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9R3W8\|W9R3W8_9ROSA	1.6e-22	52.99	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000591 PE=4 SV=1	[more]
tr\|A0A2I4GLB2\|A0A2I4GLB2_9ROSI	1.2e-20	65.69	uncharacterized protein LOC109008879 OS=Juglans regia OX=51240 GN=LOC109008879 P...	[more]
tr\|A0A0A0KFK3\|A0A0A0KFK3_CUCSA	2.6e-20	58.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G364115 PE=4 SV=1	[more]
tr\|A0A251IZ93\|A0A251IZ93_MANES	7.5e-20	58.93	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G082200 PE=4 SV=...	[more]
tr\|A0A1U8PGG1\|A0A1U8PGG1_GOSHI	7.5e-20	48.18	uncharacterized protein LOC107907022 OS=Gossypium hirsutum OX=3635 GN=LOC1079588...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23950-RA	Carg23950-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 63..107 e-value: 2.0E-25 score: 88.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..60
None	No IPR available	PANTHER	PTHR33193:SF24	SUBFAMILY NOT NAMED	coord: 7..109
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 7..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23950	Cla021990	Watermelon (97103) v1	carwmB0694
Carg23950	MELO3C011461	Melon (DHL92) v3.5.1	carmeB0695
Carg23950	ClCG08G010030	Watermelon (Charleston Gray)	carwcgB0673
Carg23950	Cucsa.056220	Cucumber (Gy14) v1	carcgyB0779
Carg23950	CmaCh05G004240	Cucurbita maxima (Rimu)	carcmaB0977
Carg23950	CmaCh12G006480	Cucurbita maxima (Rimu)	carcmaB0975
Carg23950	CmoCh12G005870	Cucurbita moschata (Rifu)	carcmoB0948
Carg23950	CsGy6G018740	Cucumber (Gy14) v2	carcgybB0695
Carg23950	MELO3C011461.2	Melon (DHL92) v3.6.1	carmedB0708
Carg23950	Cla97C08G152870	Watermelon (97103) v2	carwmbB0725
Carg23950	Bhi04G001163	Wax gourd	carwgoB0820

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23950	Carg09297	Silver-seed gourd	carcarB166

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23950	Cucurbita moschata (Rifu)	carcmoB0950
Carg23950	Cucurbita pepo (Zucchini)	carcpeB0976
Carg23950	Wild cucumber (PI 183967)	carcpiB0733
Carg23950	Cucumber (Chinese Long) v2	carcuB0718
Carg23950	Cucumber (Chinese Long) v3	carcucB0736
Carg23950	Bottle gourd (USVL1VR-Ls)	carlsiB636