ClCG08G010030 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G010030
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Chromosome chr9 scaffold_7, whole genome shotgun sequence
Location	CG_Chr08 : 22822509 .. 22822787 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGAGAGAAGAAGTTCTTATGGAAACTCGTCTATGGAGATTGAAAAGTATTATGGGCCACCAAAAAGCCAAGAATCTGTAAAGAAAGGGAAAAGTATTTCTGGGTCATCTTCAAAATCATGGAGATTTGTTGGAGACCCTGAATTTCAAAGGAAAAGAAGAGTTGCAAGCTACAAGATGTATTCTGTTGAAGGCAAGATGAAAGGATCCTTCAGAAAAAGCTTCAAATGGCTTAAAGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

mRNA sequence

ATGGATGATGAGAGAAGAAGTTCTTATGGAAACTCGTCTATGGAGATTGAAAAGTATTATGGGCCACCAAAAAGCCAAGAATCTGTAAAGAAAGGGAAAAGTATTTCTGGGTCATCTTCAAAATCATGGAGATTTGTTGGAGACCCTGAATTTCAAAGGAAAAGAAGAGTTGCAAGCTACAAGATGTATTCTGTTGAAGGCAAGATGAAAGGATCCTTCAGAAAAAGCTTCAAATGGCTTAAAGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

Coding sequence (CDS)

ATGGATGATGAGAGAAGAAGTTCTTATGGAAACTCGTCTATGGAGATTGAAAAGTATTATGGGCCACCAAAAAGCCAAGAATCTGTAAAGAAAGGGAAAAGTATTTCTGGGTCATCTTCAAAATCATGGAGATTTGTTGGAGACCCTGAATTTCAAAGGAAAAGAAGAGTTGCAAGCTACAAGATGTATTCTGTTGAAGGCAAGATGAAAGGATCCTTCAGAAAAAGCTTCAAATGGCTTAAAGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGA

Protein sequence

MDDERRSSYGNSSMEIEKYYGPPKSQESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW

Homology

[Close]

BLAST of ClCG08G010030 vs. TrEMBL
Match: A0A0A0KFK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364115 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-34
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 14 MEIEKYYGPP-KSQESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGS 73
          MEIEKYYGP  KSQ SVKKGKS SGSSSKSWRFV DPEFQRK+RVASYKMYSVEGKMKGS
Sbjct: 1  MEIEKYYGPSSKSQVSVKKGKSTSGSSSKSWRFVADPEFQRKKRVASYKMYSVEGKMKGS 60

Query: 74 FRKSFKWLKDKYTQMLYGWW 93
          FRKSF+WLKDKYTQMLYGWW
Sbjct: 61 FRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of ClCG08G010030 vs. TrEMBL
Match: W9R3W8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000591 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-27
Identity = 66/112 (58.93%), Postives = 78/112 (69.64%), Query Frame = 1


Query: 2   DDERRSSYGNSSMEIEKYYGPPKSQES--------------------VKKGKSISGSSS- 61
           D  R  SYG+  M+I+ YYGPP+S  +                    +KKGK+ SGSSS 
Sbjct: 3   DCNRSRSYGSGMMQIDNYYGPPRSFSTSHTQTQMGNDINNNNIRDLKMKKGKNASGSSSS 62

Query: 62  KSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
           K W F GDPEFQRK+RVASYKMYSVEGK+KGSFRKSF+WLKDKYTQ++YGWW
Sbjct: 63  KPWSF-GDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of ClCG08G010030 vs. TrEMBL
Match: M1AEQ2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008197 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-25
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 1


Query: 1   MDDERRSSYGNSSMEIEKYYGPPKSQE----------------SVKKGKSISGSSSKSWR 60
           MDD R  SY +  M+++KY+ P  S +                 +KKGKS SGSSSKSW 
Sbjct: 1   MDDYRSKSYADGRMQMDKYHEPQFSNDLRSVGAPPPAHHNKDLKLKKGKSTSGSSSKSWN 60

Query: 61  FVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGW 92
           F  DPEFQRKRRVASYK+YSVEGK+KGS R+S +W KDKYTQ+LYGW
Sbjct: 61  F-NDPEFQRKRRVASYKVYSVEGKVKGSLRRSLRWFKDKYTQVLYGW 106

[Close]

BLAST of ClCG08G010030 vs. TrEMBL
Match: A0A0D2RTX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G043500 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-24
Identity = 64/123 (52.03%), Postives = 78/123 (63.41%), Query Frame = 1


Query: 1   MDDERRS-SYGNSSMEIEKYYGPPKSQES-----------------------------VK 60
           M+D  RS SYGN  M+++ Y+GPP+   S                             +K
Sbjct: 1   MEDYNRSRSYGNGMMQLDTYHGPPRPSASYDLRCHSAAAYAQSQMANNYNSGNNRDFKLK 60

Query: 61  KGKSISGSSSKS-WRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLY 93
           KGKS S SSS + W F GDPEFQRK+RVASYKMYSVEGK+KGS R+SF+WLKDKYTQ++Y
Sbjct: 61  KGKSASASSSSNPWSF-GDPEFQRKKRVASYKMYSVEGKVKGSLRRSFRWLKDKYTQVVY 120

[Close]

BLAST of ClCG08G010030 vs. TrEMBL
Match: M5XFG9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013495mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-24
Identity = 65/117 (55.56%), Postives = 74/117 (63.25%), Query Frame = 1


Query: 2   DDERRSSYGNSS--MEIEKYYGPPKSQES------------------------VKKGKSI 61
           D  R  SYG  S  M++E YYGPP+   S                        +KKGKS 
Sbjct: 3   DYSRSKSYGTGSGTMQMENYYGPPRPPTSYELRSYSVSYAQTQMANNNNRDFKLKKGKST 62

Query: 62  SGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
           SGSSSKS   + DPE QRK+RVASYKMYSVEGKMKGSFRKSF+WLKDK TQ++YGWW
Sbjct: 63  SGSSSKSNWGLMDPELQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKCTQVVYGWW 119

[Close]

BLAST of ClCG08G010030 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 99.8 bits (247), Expect = 9.6e-22
Identity = 53/106 (50.00%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 2   DDERRSSYGNSSMEIEKYYGPPKSQ---------------ESVKKGKSISGSSSKSWRFV 61
           D  R+  YG+  M+I+ Y+G                      VKK KSI+   SKSW  +
Sbjct: 3   DFGRQRPYGDGGMQIQPYHGNQGGDFRSYSASYGTRENNIYDVKKEKSIA--RSKSWG-I 62

Query: 62  GDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
            DPE QRK+RVASYKMY VEGK+KGSFR SF+WLK +YTQ++YGWW
Sbjct: 63  TDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGWW 105

[Close]

BLAST of ClCG08G010030 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 27  ESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQ 86
           ++ KKG+S   SSS SW FV DP+ QRK+RV SY+ Y+VEGK+KGSFRKSFKW+KDK  +
Sbjct: 58  QNPKKGRS---SSSSSWGFV-DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNK 115

Query: 87  ML 89
           +L
Sbjct: 118 LL 115

[Close]

BLAST of ClCG08G010030 vs. TAIR10
Match: AT3G13910.1 (AT3G13910.1 Protein of unknown function (DUF3511))

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 26 QESVKKGKSISGS---SSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKD 83
          Q  +KK KS+  +   +S+SW F  DPE +RKRRVA YK+YSVE KMKGS RKSFKW KD
Sbjct: 39 QLKIKKSKSVPNADRAASRSWSF-SDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFKD 97

[Close]

BLAST of ClCG08G010030 vs. TAIR10
Match: AT1G72720.1 (AT1G72720.1 Protein of unknown function (DUF3511))

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 27  ESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQ 86
           +S  K K  +    K ++ + + E QRK+RVASY +Y VEG++KGS +KSFKW K+  + 
Sbjct: 62  DSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSN 121

Query: 87  MLYGWW 93
            +YG W
Sbjct: 122 AVYGLW 127

[Close]

BLAST of ClCG08G010030 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1


Query: 38  SSSKSWRFVG---DPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYG 91
           SSS S  F G   DPE +RKRRVA YK+YS EGKMK + RKS+KW+K + +++++G
Sbjct: 68  SSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of ClCG08G010030 vs. NCBI nr
Match: gi|700192405|gb|KGN47609.1| (hypothetical protein Csa_6G364115 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-34
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 14 MEIEKYYGPP-KSQESVKKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGS 73
          MEIEKYYGP  KSQ SVKKGKS SGSSSKSWRFV DPEFQRK+RVASYKMYSVEGKMKGS
Sbjct: 1  MEIEKYYGPSSKSQVSVKKGKSTSGSSSKSWRFVADPEFQRKKRVASYKMYSVEGKMKGS 60

Query: 74 FRKSFKWLKDKYTQMLYGWW 93
          FRKSF+WLKDKYTQMLYGWW
Sbjct: 61 FRKSFRWLKDKYTQMLYGWW 80

[Close]

BLAST of ClCG08G010030 vs. NCBI nr
Match: gi|1009134393|ref|XP_015884421.1| (PREDICTED: uncharacterized protein LOC107420071 [Ziziphus jujuba])

HSP 1 Score: 129.8 bits (325), Expect = 2.4e-27
Identity = 68/120 (56.67%), Postives = 77/120 (64.17%), Query Frame = 1


Query: 1   MDDERRS---SYGNSSMEIEKYYGPPKSQES-------------------------VKKG 60
           M+D  RS   SYG   M++E YYGPP    +                          KKG
Sbjct: 1   MEDYNRSKSYSYGGGMMQMETYYGPPPGAPTSYDLRSYSASYSQTQMGYNTNRDIKFKKG 60

Query: 61  KSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
           KS SGSSS+SW F  DPEFQRK+RVASYKMYSVEGKMKGSFRKSF+WLKDKYTQ++YGWW
Sbjct: 61  KSTSGSSSRSWNFT-DPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQVVYGWW 119

[Close]

BLAST of ClCG08G010030 vs. NCBI nr
Match: gi|703091265|ref|XP_010094301.1| (hypothetical protein L484_000591 [Morus notabilis])

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-27
Identity = 66/112 (58.93%), Postives = 78/112 (69.64%), Query Frame = 1


Query: 2   DDERRSSYGNSSMEIEKYYGPPKSQES--------------------VKKGKSISGSSS- 61
           D  R  SYG+  M+I+ YYGPP+S  +                    +KKGK+ SGSSS 
Sbjct: 3   DCNRSRSYGSGMMQIDNYYGPPRSFSTSHTQTQMGNDINNNNIRDLKMKKGKNASGSSSS 62

Query: 62  KSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGWW 93
           K W F GDPEFQRK+RVASYKMYSVEGK+KGSFRKSF+WLKDKYTQ++YGWW
Sbjct: 63  KPWSF-GDPEFQRKKRVASYKMYSVEGKVKGSFRKSFRWLKDKYTQVVYGWW 113

[Close]

BLAST of ClCG08G010030 vs. NCBI nr
Match: gi|747040821|ref|XP_011100119.1| (PREDICTED: uncharacterized protein LOC105178320 [Sesamum indicum])

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-25
Identity = 62/123 (50.41%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 1   MDDERRSSYGNSSMEIEKYYGPPKSQ-------------------------------ESV 60
           M D R   Y + +M+IE YYGPP S                                + +
Sbjct: 1   MADYRSKFYSDGNMQIEPYYGPPSSARTDDLRSYSASYASASSSSSYHYAPPPVAPPQKL 60

Query: 61  KKGKSISGSSSKSWRFVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLY 93
           KKGKS  GS+SKSW F  DPEFQRK+RVASYK+YSVEGK+KG+FRKSF+WLKD+YTQ++Y
Sbjct: 61  KKGKSTGGSTSKSWSFT-DPEFQRKKRVASYKVYSVEGKVKGTFRKSFRWLKDRYTQVVY 120

[Close]

BLAST of ClCG08G010030 vs. NCBI nr
Match: gi|565369945|ref|XP_006351591.1| (PREDICTED: uncharacterized protein LOC102597557 [Solanum tuberosum])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 61/107 (57.01%), Postives = 73/107 (68.22%), Query Frame = 1


Query: 1   MDDERRSSYGNSSMEIEKYYGPPKSQE----------------SVKKGKSISGSSSKSWR 60
           MDD R  SY +  M+++KY+ P  S +                 +KKGKS SGSSSKSW 
Sbjct: 1   MDDYRSKSYADGRMQMDKYHEPQFSNDLRSVGAPPPAHHNKDLKLKKGKSTSGSSSKSWN 60

Query: 61  FVGDPEFQRKRRVASYKMYSVEGKMKGSFRKSFKWLKDKYTQMLYGW 92
           F  DPEFQRKRRVASYK+YSVEGK+KGS R+S +W KDKYTQ+LYGW
Sbjct: 61  F-NDPEFQRKRRVASYKVYSVEGKVKGSLRRSLRWFKDKYTQVLYGW 106

The following BLAST results are available for this feature:

BLAST of ClCG08G010030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFK3_CUCSA	1.9e-34	91.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364115 PE=4 SV=1	[more]
W9R3W8_9ROSA	2.2e-27	58.93	Uncharacterized protein OS=Morus notabilis GN=L484_000591 PE=4 SV=1	[more]
M1AEQ2_SOLTU	7.9e-25	57.01	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008197 PE=4 SV=1	[more]
A0A0D2RTX7_GOSRA	1.8e-24	52.03	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G043500 PE=4 SV=1	[more]
M5XFG9_PRUPE	2.3e-24	55.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013495mg PE=4 SV=1	[more]

BLAST of ClCG08G010030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11970.1	9.6e-22	50.00	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	1.0e-15	62.90	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	1.6e-13	61.67	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	2.0e-11	43.94	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	1.3e-10	55.36	Protein of unknown function (DUF3511)	[more]

BLAST of ClCG08G010030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192405\|gb\|KGN47609.1\|	2.7e-34	91.25	hypothetical protein Csa_6G364115 [Cucumis sativus]	[more]
gi\|1009134393\|ref\|XP_015884421.1\|	2.4e-27	56.67	PREDICTED: uncharacterized protein LOC107420071 [Ziziphus jujuba]	[more]
gi\|703091265\|ref\|XP_010094301.1\|	3.2e-27	58.93	hypothetical protein L484_000591 [Morus notabilis]	[more]
gi\|747040821\|ref\|XP_011100119.1\|	2.3e-25	50.41	PREDICTED: uncharacterized protein LOC105178320 [Sesamum indicum]	[more]
gi\|565369945\|ref\|XP_006351591.1\|	1.1e-24	57.01	PREDICTED: uncharacterized protein LOC102597557 [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G010030.1	ClCG08G010030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 47..90 score: 8.8
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 1..92 score: 3.7
None	No IPR available	PANTHER	PTHR33193:SF8	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MDC16	coord: 1..92 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G010030	MELO3C011461	Melon (DHL92) v3.5.1	mewcgB296
ClCG08G010030	Cla021990	Watermelon (97103) v1	wcgwmB400
ClCG08G010030	Cla97C08G152870	Watermelon (97103) v2	wcgwmbB336
ClCG08G010030	Bhi04G001163	Wax gourd	wcgwgoB626
ClCG08G010030	Cucsa.056220	Cucumber (Gy14) v1	cgywcgB046
ClCG08G010030	CmaCh12G006480	Cucurbita maxima (Rimu)	cmawcgB175
ClCG08G010030	CmaCh05G004240	Cucurbita maxima (Rimu)	cmawcgB709
ClCG08G010030	CmoCh05G004420	Cucurbita moschata (Rifu)	cmowcgB713
ClCG08G010030	CmoCh12G005870	Cucurbita moschata (Rifu)	cmowcgB166
ClCG08G010030	Cp4.1LG11g03660	Cucurbita pepo (Zucchini)	cpewcgB122
ClCG08G010030	CsGy6G018740	Cucumber (Gy14) v2	cgybwcgB454
ClCG08G010030	MELO3C011461.2	Melon (DHL92) v3.6.1	medwcgB289
ClCG08G010030	Carg09297	Silver-seed gourd	carwcgB0138
ClCG08G010030	Carg23950	Silver-seed gourd	carwcgB0673

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G010030	Cucumber (Chinese Long) v3	cucwcgB514
ClCG08G010030	Cucumber (Chinese Long) v3	cucwcgB523
ClCG08G010030	Wax gourd	wcgwgoB615
ClCG08G010030	Wild cucumber (PI 183967)	cpiwcgB522
ClCG08G010030	Cucumber (Chinese Long) v2	cuwcgB496
ClCG08G010030	Cucurbita pepo (Zucchini)	cpewcgB756
ClCG08G010030	Bottle gourd (USVL1VR-Ls)	lsiwcgB438