Carg08285 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08285
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ubiquitin-conjugating enzyme E2
Location	Cucurbita_argyrosperma_scaffold_015 : 631000 .. 634245 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTAGCCACTATACTTAGTTATGTATATCATGAGTCCACACGAAGGGATCCGACTACGAGTATGTTGAGGATTGTTGGGAGTGAGTACCACGTTGGCCAATTTAGGGAACGATCATGTGTTTATAAGCAAAATACCTCTCTATTGGTATGAGGCATTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCATAGTAGACAATATCATACCATTGTGGAGAGTCATGATTCCTAACATGGCATTAGAGCCCTGCCGTAAACCTAGCTATGACAATAGGATCCTCAAATATTGAACAAAGAATTGTGAGCCTTGAAGGTGTAGTCAAAAGTGACTAAAGTGTTGAACAAAGGGTGTACTTTGTTCGAGGGCTCCAGAGAAAGGAGTCGAGTCTCGATTAAGGGGAGACTTATAGTGTATTTTGTTCGAGTTGAGGATCGTTGGGAGTGTGTCTCACATTGGCTAATTTAGAGAATGATCATGGATTTATAAGTAGAGTAATATCTCTCCATTGGTATGAAGCCTTTTGGGGAAGTCCAAAGCAAAGCTATGAGAGCTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGAGTTGTGATTCCTAGTAGAGGTTCAGTCAAGTATCATGTCTGAGCCTTTGATTTTGTGTAGGCGTCAAGAGCAAGGTTGTTCAAGGAGTACAAAGAGGTTCAAAGAGAAAAGGTAGCAGATCCAGATATTCAGTTGGTTTGTGACGATTCCAATATTTTTAAATGGATAGCGCTAATCAAGGTAACCCTCTCAATGATCCAGATGAAATATGTGGTTTCAGAGTTTTTCTTTTCTTTTTTTTTTTTTTTTTGCTTACCATGATTGATATGCATTTTTATTTAGGGACCATCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTATCCGTACCTGAGCAGTACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGGTAGAAGTTGCTCTGGTCCTTTTTCTAGATCCTATGCTGACTATGAGCCTTTAGAAAGAAAGAAGAATACACCAAAATGTAGGTGCTGTACCGTTGTTGTAAGTGAATGTAATGAAAAGATCGATGCGAGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAATAGGGGTTAAGGTGGGCCGGTGACACGTAGGGGATAAGCTTGATCATGGGGGAGGAAAGGGAAACACTAGGGGAGGGGGTACCGTTGTCCAAGGGAGAGTAGTGAGCAGCAGTATTTAGGTCGTTTTTTAATTAGTTAACAAATACCGTTGAGCATCTGTGCATGGAGGGGAATATGGTGGAGAATATATCAGAGTGAGATCCCAGCGTCAGCGAGGATGTTGGGCCCTAAAGGGGATGGATTGCGAGATCCCACATCGGTTGGAGAGGGCAACAAAACATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGCTGACGCGTTTTAAAACCTCGAGGGGAAGTCTCGAAGGAAAAGCGCAAAGAGGACAATATCTGCTAGTTGTGAAGGTACACGGGAGTTGCAATGATGCTAGCGGTGGAGGTACCACGGGAGAAGAGTTTACGACAAGCAACCGGGTAAAAAGGAAGTGAACTCAATAGAAAGAAGCGACTGGGATTAGGAGTGGGAAGCTAGATATTTCGTGGACTGCTTTGTTCATATGAGAGGAGTTCTTGTTGCAGAGCAATTCAGTGCATTAGTGAGTTGCAGTCTAAAGGGAGAAGGAGAGGTTCGGTATGATTTTGATGGGTGGCTTGGAGCCCGAAAGAGGGTGATCCGGTCACGGGACGAGTAGAGAACCCGAATATTCCTTATTCCAACTTTTGCAGAAGGCCATACTCAGTGAAAATTCATAGCTCTCCGGCCACTGGCATATGAAGTGCTTGTGTAACGCCATTGATTGAAATAGTATAAGTTGCATTCTTTGCTATGAACTATATTGATGAATAGTGATCATTCAAGTTCGCCGACCCCTTTTGTGATTGTAGTCTTAGTTTATAGTGAACCTTATTTTTAATACACGAATCGAACCACACTTATACTTACCGATGTACGTCGTTCCTGCAGACGGGTGAGATCTGCCTAGACATATTGAAGAACGCGTGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATCGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGTGAGTTTTCATGGATTCCTTATGATGAATTTTCCTGATTTATATGTTCATTTATTTGAATCTTTGTGATGGCGTGATAATGTAGCAAAGTAGTTAATTGATCTGAAAACTGCTTCTGGTTCGCGATTGAATTAGTTCATCATTCCTAAACCATTCTTTTGGAGAATGATTTGCATAATAGTTAAGAATAGATGCAAAAATTATGGGAAGAACACTGAGCTAGTCGCTTGAATCTATAGGCAACCTCTCCTCGATCAAACAAACTCTGAATTTCATAAGAGAATCAAGATCGTAGTTGCATCAGTTTGGCTCGGGTCTAGGCCGATACTGATGTAAACTAGCTTATCGATTTATGAATATAAAAACCCAATAAGACTAAACCAGTTGAGTTCAGTTGTATATTTTTAAATTGAATCGATTGATAATGCTCGAGATATTGGGGAATTTCACTCCTTAGGAAGGCGTTGTGCATTGTGAGCCAGCTTCAAGGAGGCAACTAGAATTCAATTTTTAATGAATACGGCTCCGTTTGATAACTATTTAGTTTTTAGTTTCTGAAAAGTGTGCTTATTTTCTCGTAATTTCTTTAGAATAATTTATCTTTCTGAAGGCAATATTTTGGTGAAAGTTGTGTTTATAAGCTAAATTTCCAAAATAAAAAATCGAAAAGGCTCGAACTTAGGTCTGGGGTGATTCAACTTAAGACCTTGGAGAGAATCTCCGAACATTCTAAGTACAACGGTATCATTTGGAGGTGAAATAATTGAAGCGTGTTGCTCGGTTTCATAAACTTTTTTTGGGATCAAACCCCGGTAACACATATAAAGCAATTCGAGTGATCTTCAATTCTTCTGACCGATTGTTTGGGTGTTTACAGGAAATCTTCTGCGTTCGGGCGATGTCCGAGGTTATCAATCAATGGCAAGGATGTACACAAGGCTGGCTGCCATGCCCAAAAAGGGCTGA

mRNA sequence

ATGCAGGGACCATCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTATCCGTACCTGAGCAGTACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGACGGGTGAGATCTGCCTAGACATATTGAAGAACGCGTGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATCGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGAAATCTTCTGCGTTCGGGCGATGTCCGAGGTTATCAATCAATGGCAAGGATGTACACAAGGCTGGCTGCCATGCCCAAAAAGGGCTGA

Coding sequence (CDS)

ATGCAGGGACCATCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTATCCGTACCTGAGCAGTACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGACGGGTGAGATCTGCCTAGACATATTGAAGAACGCGTGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATCGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGAAATCTTCTGCGTTCGGGCGATGTCCGAGGTTATCAATCAATGGCAAGGATGTACACAAGGCTGGCTGCCATGCCCAAAAAGGGCTGA

Protein sequence

MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG

Homology

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BLAST of Carg08285 vs. NCBI nr
Match: XP_022962320.1 (protein PEROXIN-4-like [Cucurbita moschata] >XP_022996597.1 protein PEROXIN-4-like [Cucurbita maxima] >XP_023545582.1 protein PEROXIN-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 7.6e-62
Identity = 115/117 (98.29%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

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BLAST of Carg08285 vs. NCBI nr
Match: XP_022857422.1 (protein PEROXIN-4-like [Olea europaea var. sylvestris])

HSP 1 Score: 245.4 bits (625), Expect = 9.9e-62
Identity = 114/117 (97.44%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGD+RGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGYQSMARMYTRLAAMPKKG 157

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BLAST of Carg08285 vs. NCBI nr
Match: PNT33458.1 (hypothetical protein POPTR_006G240900v3 [Populus trichocarpa])

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-61
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           MQGPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 1   MQGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAA PKKG
Sbjct: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAASPKKG 117

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BLAST of Carg08285 vs. NCBI nr
Match: KHN18193.1 (Protein PEROXIN-4 [Glycine soja] >KRH52690.1 hypothetical protein GLYMA_06G082900 [Glycine max] >KRH52691.1 hypothetical protein GLYMA_06G082900 [Glycine max] >KRH52692.1 hypothetical protein GLYMA_06G082900 [Glycine max])

HSP 1 Score: 244.2 bits (622), Expect = 2.2e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

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BLAST of Carg08285 vs. NCBI nr
Match: XP_015945667.1 (protein PEROXIN-4 [Arachis duranensis] >XP_015945668.1 protein PEROXIN-4 [Arachis duranensis] >XP_015945669.1 protein PEROXIN-4 [Arachis duranensis] >XP_016181130.1 protein PEROXIN-4 [Arachis ipaensis] >XP_025623803.1 protein PEROXIN-4 [Arachis hypogaea] >XP_025623804.1 protein PEROXIN-4 [Arachis hypogaea] >XP_025623805.1 protein PEROXIN-4 [Arachis hypogaea] >XP_025623806.1 protein PEROXIN-4 [Arachis hypogaea] >XP_025681396.1 protein PEROXIN-4 [Arachis hypogaea])

HSP 1 Score: 244.2 bits (622), Expect = 2.2e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

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BLAST of Carg08285 vs. TAIR10
Match: AT5G25760.1 (peroxin4)

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-62
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETP+EGGVFQLA SVPE YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRG+ SMA+MYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157

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BLAST of Carg08285 vs. TAIR10
Match: AT1G16890.3 (ubiquitin-conjugating enzyme 36)

HSP 1 Score: 110.9 bits (276), Expect = 5.3e-25
Identity = 53/110 (48.18%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 3   GPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAW 62
           GP+++P+EGGVF+L L +PE+YP+  P+VRFLTKI+HPN+  K G ICLDILK+ WSPA 
Sbjct: 52  GPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPAL 111

Query: 63  TLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAA 113
            +++V  +I AL++ P PD PL+ +     +S +    ++ A+ +TRL A
Sbjct: 112 QIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVET-AKEWTRLYA 159

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BLAST of Carg08285 vs. TAIR10
Match: AT5G53300.1 (ubiquitin-conjugating enzyme 10)

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-24
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           + GPSE+P+ GGVF + +  P  YP +PP+V F TK+FHPN++   G ICLDILK  WSP
Sbjct: 37  IMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSP 96

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAM 114
           A T+  V  +I +L+  P PD PL  +  ++ ++ D   Y+S AR +T+  AM
Sbjct: 97  ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKNKYESTARSWTQKYAM 147

[Close]

BLAST of Carg08285 vs. TAIR10
Match: AT4G27960.2 (ubiquitin conjugating enzyme 9)

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-24
Identity = 50/113 (44.25%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           + GPS++P+ GGVF + +  P  YP +PP+V F TK+FHPN++   G ICLDILK  WSP
Sbjct: 67  IMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSP 126

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAM 114
           A T+  V  +I +L+  P PD PL  +  ++ ++ D   Y+S AR +T+  AM
Sbjct: 127 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKNKYESTARTWTQKYAM 177

[Close]

BLAST of Carg08285 vs. TAIR10
Match: AT1G64230.4 (ubiquitin-conjugating enzyme 28)

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-24
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           + GPS++P+ GGVF + +  P  YP +PP+V F TK+FHPNV+   G ICLDILK  WSP
Sbjct: 79  IMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVN-SNGSICLDILKEQWSP 138

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAM 114
           A T+  V  +I +L+  P PD PL  +  ++ ++ D   Y+S AR +T+  AM
Sbjct: 139 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYESTARSWTQKYAM 189

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BLAST of Carg08285 vs. Swiss-Prot
Match: sp|Q8LGF7|PEX4_ARATH (Protein PEROXIN-4 OS=Arabidopsis thaliana OX=3702 GN=PEX4 PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.6e-61
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETP+EGGVFQLA SVPE YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRG+ SMA+MYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157

[Close]

BLAST of Carg08285 vs. Swiss-Prot
Match: sp|Q86IZ3|UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum OX=44689 GN=pex4 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-43
Identity = 75/110 (68.18%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GP +TP+E G F+L +SVP  YPLQPP ++F+TKIFHPN+HFKTGEICLD+LK +WS 
Sbjct: 37  IKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSA 96

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRL 111
            +TLQSVCR+IIAL++ PE DSPLNCD+GNL+R+GDV+G+ S+ARMYTRL
Sbjct: 97  IYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRL 146

[Close]

BLAST of Carg08285 vs. Swiss-Prot
Match: sp|Q9P6I1|UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubc16 PE=3 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-30
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GP+ETP+EGG + L + V E YP+ PP V F TKI HPN+ +  GE+C+DILK  WSP
Sbjct: 41  IEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPK 116
           AW+LQS C AII+L+++ +  SPLN D+  LLR+GD   Y S+ R  T L A  K
Sbjct: 101 AWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKGK 155

[Close]

BLAST of Carg08285 vs. Swiss-Prot
Match: sp|O60015|UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta OX=870730 GN=PEX4 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.4e-27
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLT----------------------KIF 60
           ++GP ++PFE  +++L + +P  YPL PP+++F+                       K+ 
Sbjct: 48  IRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMP 107

Query: 61  HPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVR 108
           HPNV+FKTGEICLDIL+  WSPAWTLQS   AI+ L+A+PEP SPLN D  NLL+  D  
Sbjct: 108 HPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTT 167

[Close]

BLAST of Carg08285 vs. Swiss-Prot
Match: sp|Q9EQX9|UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus OX=10116 GN=Ube2n PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.0e-25
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 3   GPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAW 62
           GP ++PFEGG F+L L +PE+YP+  P+VRF+TKI+HPNV  K G ICLDILK+ WSPA 
Sbjct: 41  GPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPAL 100

Query: 63  TLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAM 114
            +++V  +I AL++ P PD PL  D     +S + +  ++ AR +TRL AM
Sbjct: 101 QIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIET-ARAWTRLYAM 149

[Close]

BLAST of Carg08285 vs. TrEMBL
Match: tr|A0A2K2A7E4|A0A2K2A7E4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G240900v3 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.5e-62
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           MQGPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 1   MQGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAA PKKG
Sbjct: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAASPKKG 117

[Close]

BLAST of Carg08285 vs. TrEMBL
Match: tr|I1K9A6|I1K9A6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100305756 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]

BLAST of Carg08285 vs. TrEMBL
Match: tr|I3SC14|I3SC14_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]

BLAST of Carg08285 vs. TrEMBL
Match: tr|A0A1J7H810|A0A1J7H810_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_24215 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]

BLAST of Carg08285 vs. TrEMBL
Match: tr|A0A0B2QDV8|A0A0B2QDV8_GLYSO (Protein PEROXIN-4 OS=Glycine soja OX=3848 GN=glysoja_025083 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

The following BLAST results are available for this feature:

BLAST of Carg08285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962320.1	7.6e-62	98.29	protein PEROXIN-4-like [Cucurbita moschata] >XP_022996597.1 protein PEROXIN-4-li...	[more]
XP_022857422.1	9.9e-62	97.44	protein PEROXIN-4-like [Olea europaea var. sylvestris]	[more]
PNT33458.1	1.3e-61	98.29	hypothetical protein POPTR_006G240900v3 [Populus trichocarpa]	[more]
KHN18193.1	2.2e-61	97.44	Protein PEROXIN-4 [Glycine soja] >KRH52690.1 hypothetical protein GLYMA_06G08290...	[more]
XP_015945667.1	2.2e-61	97.44	protein PEROXIN-4 [Arachis duranensis] >XP_015945668.1 protein PEROXIN-4 [Arachi...	[more]

BLAST of Carg08285 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25760.1	1.4e-62	93.16	peroxin4	[more]
AT1G16890.3	5.3e-25	48.18	ubiquitin-conjugating enzyme 36	[more]
AT5G53300.1	2.0e-24	45.13	ubiquitin-conjugating enzyme 10	[more]
AT4G27960.2	3.4e-24	44.25	ubiquitin conjugating enzyme 9	[more]
AT1G64230.4	4.5e-24	45.13	ubiquitin-conjugating enzyme 28	[more]

BLAST of Carg08285 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LGF7\|PEX4_ARATH	2.6e-61	93.16	Protein PEROXIN-4 OS=Arabidopsis thaliana OX=3702 GN=PEX4 PE=1 SV=1	[more]
sp\|Q86IZ3\|UBCX_DICDI	1.4e-43	68.18	Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum OX=44689 GN=pex...	[more]
sp\|Q9P6I1\|UBC16_SCHPO	3.1e-30	52.17	Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]
sp\|O60015\|UBCX_PICAN	5.4e-27	43.41	Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta OX=870730 GN=PEX4 PE=1 ...	[more]
sp\|Q9EQX9\|UBE2N_RAT	5.0e-25	50.45	Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus OX=10116 GN=Ube2n PE=1 SV...	[more]

BLAST of Carg08285 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2K2A7E4\|A0A2K2A7E4_POPTR	8.5e-62	98.29	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G240900v3 PE=...	[more]
tr\|I1K9A6\|I1K9A6_SOYBN	1.5e-61	97.44	Uncharacterized protein OS=Glycine max OX=3847 GN=100305756 PE=3 SV=1	[more]
tr\|I3SC14\|I3SC14_LOTJA	1.5e-61	97.44	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
tr\|A0A1J7H810\|A0A1J7H810_LUPAN	1.5e-61	97.44	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_24215 PE=3 S...	[more]
tr\|A0A0B2QDV8\|A0A0B2QDV8_GLYSO	1.5e-61	97.44	Protein PEROXIN-4 OS=Glycine soja OX=3848 GN=glysoja_025083 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023313	UBQ-conjugating_AS
IPR016135	UBQ-conjugating_enzyme/RWD
IPR000608	UBQ-conjugat_E2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08285-RA	Carg08285-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 1..113 e-value: 3.8E-29 score: 112.8
None	No IPR available	PANTHER	PTHR43902:SF1	UBIQUITIN-CONJUGATING ENZYME E2-21 KDA	coord: 1..116
None	No IPR available	PANTHER	PTHR43902	FAMILY NOT NAMED	coord: 1..116
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 1..107 e-value: 8.4E-39 score: 132.3
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBIQUITIN_CONJUGAT_2	coord: 1..93 score: 32.16
IPR000608	Ubiquitin-conjugating enzyme E2	CDD	cd00195	UBCc	coord: 3..108 e-value: 5.67684E-42 score: 136.178
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	G3DSA:3.10.110.10		coord: 1..113 e-value: 5.7E-46 score: 157.9
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	SSF54495	UBC-like	coord: 3..113
IPR023313	Ubiquitin-conjugating enzyme, active site	PROSITE	PS00183	UBIQUITIN_CONJUGAT_1	coord: 38..54

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08285	Cla022221	Watermelon (97103) v1	carwmB0058
Carg08285	Csa2G375190	Cucumber (Chinese Long) v2	carcuB0059
Carg08285	MELO3C011153	Melon (DHL92) v3.5.1	carmeB0058
Carg08285	CSPI02G22370	Wild cucumber (PI 183967)	carcpiB0063
Carg08285	Cucsa.161400	Cucumber (Gy14) v1	carcgyB0066
Carg08285	CmaCh12G002600	Cucurbita maxima (Rimu)	carcmaB0074
Carg08285	CmoCh05G006250	Cucurbita moschata (Rifu)	carcmoB0087
Carg08285	CmoCh12G002130	Cucurbita moschata (Rifu)	carcmoB0078
Carg08285	Lsi08G010940	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08285	Cp4.1LG07g02260	Cucurbita pepo (Zucchini)	carcpeB0087
Carg08285	Cp4.1LG11g05270	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08285	CsGy2G022130	Cucumber (Gy14) v2	carcgybB0060
Carg08285	MELO3C011153.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08285	CsaV3_2G031000	Cucumber (Chinese Long) v3	carcucB0065
Carg08285	Cla97C08G155510	Watermelon (97103) v2	carwmbB0061
Carg08285	Bhi04G000686	Wax gourd	carwgoB0068

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08285	Carg03851	Silver-seed gourd	carcarB071

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08285	Cucurbita maxima (Rimu)	carcmaB0083
Carg08285	Bottle gourd (USVL1VR-Ls)	carlsiB054
Carg08285	Melon (DHL92) v3.6.1	carmedB0061
Carg08285	Watermelon (Charleston Gray)	carwcgB0063
Carg08285	Watermelon (97103) v1	carwmB0060