CmoCh12G002130 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G002130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUbiquitin-conjugating enzyme family protein
LocationCmo_Chr12 : 1404725 .. 1409474 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAAGTAAAATCTCAATTCCCGAGATTCGGCAGCAGGAGTCCAACGGATAAAGGAAGACGCCCAGTCGTGAAAGGTTGCTGATACGATAGACCGCAAACCACGTTCCATAGATATCCTCTCCGATTAAGGCTTCGGCGCTTCGCCCTTCGCGCATCTCCGAATTAGAATTACCTCGACCTGGTTTGTGGACGACAAATCGATCGTGTTGGTGATTGTAAGTGTTTCTATTGTTCTGTTTTTCACAATTTCCGATTTGTTCTAATTCGCGATTATTCTGCTTGTAAATGATCATATTTGCTATCGATTTCTGTCAATTTGTCTTTCTCTGGTTTCTCCAGAAGAAATTCCCTAATCTATCAATTTCCATTTCTTTTCTTTTTGTTTTCCTCCGCGGTTTCTTCTCTAGGGTTTGATATATTATGGATACAACAAATCCTTATGATTTTACTCATGATAGTTCATTCTTTTGTAGAGTTTCTTGAACCGATTGCAGTTTTTCTGCCGGTAATTGTGTTGGTTTGAGATTTGAGAATTCTAGGCTTGAAGCTGCTTGTGTCGTCTGCAAGCATCTATAATGCAGGTAAGCGACTAGAATTAGTTATATTGCTTTTTCTTGATTCTTGTGTCATCTGAAAGTAGATACACTTATGATATTGACCGTGAATATAATGACCTTACAGCCATAACTTGCGTTTTGCTATGAGAAGTGTTACTCATTTGGAATGCGGGAGTTGAGTTCATTTTGTTAATGGACGATTTGCAATGTTTCGAGTATATATTAACTGACAATGTGTAGAACTACTAACTTTTGTAATTGATTGATCTTCCATTTCGTTTAACGTTACGGTGTTCTTTATCTCGTGGATATTTGTTTTGAACCTATAATCCTGCAAAGATAAATGTCAATATGAGCGTAGTTTGAGTAGTTGTTTATTAGTATCTACTTTATGAGCGGTAGGTTCAAAACTTTTCTCATTTATAATGTAACATTGTCAAAATCTATCAAGTTAGGCGTTTTTCCTCGTTGTGGCTTCATTGAAATTTATCTTGGCCATTCAGATTTTATATATTTTTTTTTGAGGTGAGGAATCGAGCTTTTAAGAACTATGAAAAAATGACCACGGCATACAAAGAACCAAGCCTACAAAAAAGGAGTCCACCCATTAACTGTGAGATCCCACGTTTATTGGAGAGGGGAACGAAGCATTCCTTTTAATGATGTCGAAACCTCTCCATAGAAGATGTGTTTTAAAACTTGAGGGGAGGCTTGGAAGGGAAAGCCCAAAGAGGAGAATCTCTGCTAGGGGTGGACTTGGGTTGTTACAAATGGTATCAAAGTCAGACACCGGGCGGTGTGCCAGCAAGGACGCCGAGCTCCCAAGGGGTGGATTGTGAGATCCCATATTGATTGGAGAGGGGAACGAAGTATTCCTAAAAATGTCAAAACTTCTCCCTAGCATATGGTTTTAAAACGTTGAGGGGAAGTCCGGAAGGGAATGCCCAAAGAGGACAGTATCTGCTAGTGATGGGCTTGGGCTATTACATTAACTATTGAAAAAAAGACTCCAATCGAAAAGGATTAAACCAATCTTATAATTACAAAAGGCTTAAGTAACAGATGGCCACAAGGATACATTAAAAACCTAGCAAATTCCCAGACCTCCTCCCACAGTCTCTCCACCTCCCTAAAAGTTTACTGTTTCTCTCAATTCGAATTCTCCATTTTACAACAAAGAAACAAGTCTGCCACAAAACTTTATCCTTATCCATAGCACTGCGATCCCTACCTCGAGTCAAACATAGCCTCGAGCAGTTCAAGTTTGATTTCATTCCATGTCTGAACTTCTGCTGATTCTTTCTTCCTCATTCCCTTATGGAAAGTACATAAGTCTCTGTTTAGTGGTGATCAATAACAGTATGCAGTATTTGGGTTTTCTTCAAAGCTTTTATATTTTTGGATTCATCTGCATTTTTTTTAATGTGATTGTATGATAGTAAATTTCTACCTCATATTTGTCCATAATCATAGAAAACTAATTTTCTTTTATGTCGGGGTTGATTTTAATTACCTTCATGCTGATTTGTTACTGAACAGCTATTATGATTAAAAGTTGCAAATAGATATTAGCTTCCAGAAATTTATTGACTGTTCTATTTACTTGAACTGCATCGAGAATTTATATAGCGGTTTTGTAGGCCTCAAGAGCAAGGTTGTTCAAAGAGTACAAAGAGGTTCAAAGAGAGAAGGTAGCAGATCCGGATATTCAATTGGTTTGTGATGATTCCAATATTTTTAAATGGACAGCCCTAATCAAGGTAATGCTCTCAACGATCCCGATATAAAACTGAGTTAAGAGTTGTTTCTTACGGTGATTGATATGCATTATATTTAGGGACCGTCAGAGACTCCTTTTGAGGGCGGTGTTTTTCAGCTTGCCTTTTCGGTGCCTGAGCAATATCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATCTTTCATCCAAACGTTCATTTCAAGGTAGAAGTCAACTTGATCTTTTTCTAAATTGTGGGTTGACTCTGAGCCCTTCTGTCGCAATGGTTAATAGTATTAACTATAGTTGGCTAATAGCTGCATTACGACTCGAAATAATCTGTATTAGATCCGACTAATTTTCCACCAACAAGATTGCGGTAGGGATTATAAGAAGGCGATCATTGGGGAGGAAAGGGAAACGCTAAGGAGGGGGTACCGCTGTCCAAGGGATAGTAGTTAGCAGCAGGATTTAGGTCTCTCTTAACTAAACAAATAAATGCTTAGCCTCCATACATGAGGGTGAGTTGAGTAGGAAGAAAGTATATGGAAGGAAGTATATAGGATTTAATATCCTATCAGTCACTTTGAGGGTCAGATGTTTGTCCTTTGAGAATAGTTGAGGTGCACACAAGCCGGCCTGTACACTCTTGGATATATAAAAAATATATTAAAAAATCTTATGGATTCTAGGGAGGTGTAACGATGAAATGAATCAATTTAATGAAACAACCGGTGTGGTGTTCGGGTTTGGAGAAGAGTTTAAATAATTGTCATGAAATGACCGATATAAGGTTGAAAACCCTAGCGAATCCACCGGGTCGAAATGGAGTGCATCAAAAGTTGACAAACCCTATAGGACAAGGTGGAGTTGCAATTAGGGTGAATATTTTTATGGGTGAGTTTGATGATGACCTCTCCGCTCGAGATGGGATTGGGAGTAGGAAGCTAGATGCACTCATGTTTTATGGCGAGGATTCGAAGCGTTGGACATCCATATGAGTGAATTCTGGTTGCGGAAGCTGCAGCCTCGAGGGAGAGTTTACAGTGTTCTTCATCCATATGAGTGAATTCTGAACTTTTCAGTTGTTGAACCATACTTTACATGTGTCTCTGTACCTTCCTGCAGACGGGCGAGATCTGCCTCGATATACTGAAGAACGCGTGGAGCCCAGCATGGACTCTGCAGTCTGTTTGTAGGGCTATAATTGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGTGAGTTTACATGGATTCCTTATGATGAAGCTTTCTGATTTACATGTTTATTTACTGGGATCTGTTTGATGATGTGATAAAACTGGTTCTGGTGGGCAACTGAATTTTTGGGAGTTCGTTATTCTAAAATTTCTTTTTTGGAGTATTCCCTCCAAGCTAGACGATTTTGGTGGGTCGGGTTGGCCAGGGTCTTGGCCAACACTGATGTAAACTAACCCATCGATTTAAGAAAATACGAACCCACTAAGACTGAACTAAGTCGATCAGCTAATGTTCAGTTATATATTTTGAAATTGAATCGACTGATAACATTTTATAGTCAACGAGATATTAGGGATAGGCTGGATGCTCAGAGGGTCAAGCTCACCTATCGGTTGAGTCCATTGCCTGAACCTCGTAAACTCTGTCTTTGTCTTCTCTCCATTCTTTGCATTACTGATGATCCACAAGCAAGGTAAGTAGGTCTATTACGGGCCAGCTCCAGAACGAAAGACCTAACGGAGTAACTGTGGTAACTAGGGTTAGGTTTTTGGCATAGGAGTTATGAAAAATTGAACTTATAAACACTATTTTCACTTGTGAATTTCTTTAGAACTGAAATCATATTATAAAATGGGGGCTTGGGCTTTCCTCTTGGAGGTAAACCGATTGATCCTTGTTGCTCGGGTTCACAAACTTTTTCGATACGAAACTCATGCATATAAAGTAATGCATTTTCGAGAGGCGGTTGCCATTGACCTTCTAATCTTTCTAATTGATTGCGTGGGTGTTTATAGGAAATCTTCTGCGTTCGGGCGATGTTCGAGGATATCAATCCATGGCAAGGATGTACACAAGGCTTGCTGCAATGCCCAAAAAGGGCTGATATCTTTCTGTGGCTTCTCTGCCAACCATTTGAATTTGACATTGCTGCTGTCATCAAAGGAGACTACAAAAAATGTGTTGAAATTGGTCACAAAACAACAAATTTGACAATCCAGACATCTGATGTAAAGTAACACCACATTCCATCTTCTGTGTGCTTTCTCTTCTTTTTTATTCACTAGAATAAATTTTACTTTTTTTTTTTTTTTTAGATTTCTTTTGAATTAATTTCATGTATCCTTTTTTTCAGAAAAAATTATGTTGAAAATAATGTATTGTTATAGGTGCTGATTAAAATAGGGGTGTTTTAATCAATGTTGAAATAAA

mRNA sequence

GGAAAAGTAAAATCTCAATTCCCGAGATTCGGCAGCAGGAGTCCAACGGATAAAGGAAGACGCCCAGTCGTGAAAGGTTGCTGATACGATAGACCGCAAACCACGTTCCATAGATATCCTCTCCGATTAAGGCTTCGGCGCTTCGCCCTTCGCGCATCTCCGAATTAGAATTACCTCGACCTGGTTTGTGGACGACAAATCGATCGTGTTGGTGATTAGTTTCTTGAACCGATTGCAGTTTTTCTGCCGGTAATTGTGTTGGTTTGAGATTTGAGAATTCTAGGCTTGAAGCTGCTTGTGTCGTCTGCAAGCATCTATAATGCAGGCCTCAAGAGCAAGGTTGTTCAAAGAGTACAAAGAGGTTCAAAGAGAGAAGGTAGCAGATCCGGATATTCAATTGGTTTGTGATGATTCCAATATTTTTAAATGGACAGCCCTAATCAAGGGACCGTCAGAGACTCCTTTTGAGGGCGGTGTTTTTCAGCTTGCCTTTTCGGTGCCTGAGCAATATCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATCTTTCATCCAAACGTTCATTTCAAGACGGGCGAGATCTGCCTCGATATACTGAAGAACGCGTGGAGCCCAGCATGGACTCTGCAGTCTGTTTGTAGGGCTATAATTGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGAAATCTTCTGCGTTCGGGCGATGTTCGAGGATATCAATCCATGGCAAGGATGTACACAAGGCTTGCTGCAATGCCCAAAAAGGGCTGATATCTTTCTGTGGCTTCTCTGCCAACCATTTGAATTTGACATTGCTGCTGTCATCAAAGGAGACTACAAAAAATGTGTTGAAATTGGTCACAAAACAACAAATTTGACAATCCAGACATCTGATGTAAAGTAACACCACATTCCATCTTCTGTGTGCTTTCTCTTCTTTTTTATTCACTAGAATAAATTTTACTTTTTTTTTTTTTTTTAGATTTCTTTTGAATTAATTTCATGTATCCTTTTTTTCAGAAAAAATTATGTTGAAAATAATGTATTGTTATAGGTGCTGATTAAAATAGGGGTGTTTTAATCAATGTTGAAATAAA

Coding sequence (CDS)

ATGCAGGCCTCAAGAGCAAGGTTGTTCAAAGAGTACAAAGAGGTTCAAAGAGAGAAGGTAGCAGATCCGGATATTCAATTGGTTTGTGATGATTCCAATATTTTTAAATGGACAGCCCTAATCAAGGGACCGTCAGAGACTCCTTTTGAGGGCGGTGTTTTTCAGCTTGCCTTTTCGGTGCCTGAGCAATATCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATCTTTCATCCAAACGTTCATTTCAAGACGGGCGAGATCTGCCTCGATATACTGAAGAACGCGTGGAGCCCAGCATGGACTCTGCAGTCTGTTTGTAGGGCTATAATTGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGAAATCTTCTGCGTTCGGGCGATGTTCGAGGATATCAATCCATGGCAAGGATGTACACAAGGCTTGCTGCAATGCCCAAAAAGGGCTGA
Homology
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BLAST of CmoCh12G002130 vs. Swiss-Prot
Match: PEX4_ARATH (Protein PEROXIN-4 OS=Arabidopsis thaliana GN=PEX4 PE=1 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.3e-86
Identity = 150/157 (95.54%), Postives = 155/157 (98.73%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREKVADPDIQL+CDD+NIFKWTALIKGPSETP+EGGVFQLAFSV
Sbjct: 1   MQASRARLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PE YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGDVRG+ SMA+MYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-51
Identity = 91/145 (62.76%), Postives = 119/145 (82.07%), Query Frame = 1 

Query: 6   ARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYP 65
           ARL KEYK +Q E+  D  +    D+S++++W A+IKGP +TP+E G F+L  SVP  YP
Sbjct: 3   ARLMKEYKVLQNEEFEDI-LLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYP 62

Query: 66  LQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 125
           LQPP ++F+TKIFHPN+HFKTGEICLD+LK +WS  +TLQSVCR+IIAL++ PE DSPLN
Sbjct: 63  LQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLN 122

Query: 126 CDSGNLLRSGDVRGYQSMARMYTRL 151
           CD+GNL+R+GDV+G+ S+ARMYTRL
Sbjct: 123 CDAGNLIRNGDVKGHDSLARMYTRL 146

[Close]
BLAST of CmoCh12G002130 vs. Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc16 PE=3 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-35
Identity = 73/155 (47.10%), Postives = 98/155 (63.23%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           M +S  RL KEY   Q   ++   +     D ++F W A+I+GP+ETP+EGG + L   V
Sbjct: 1   MNSSIKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
            E YP+ PP V F TKI HPN+ +  GE+C+DILK  WSPAW+LQS C AII+L+++ + 
Sbjct: 61  HEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDA 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPK 156
            SPLN D+  LLR+GD   Y S+ R  T L A  K
Sbjct: 121 SSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKGK 155

[Close]
BLAST of CmoCh12G002130 vs. Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-32
Identity = 69/176 (39.20%), Postives = 100/176 (56.82%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPD-------IQLVCDDSNIFKWTALIKGPSETPFEGGV 60
           M ++  RL KEY+ V++E             + L   +  +F+W+A+I+GP ++PFE  +
Sbjct: 1   MSSTEKRLLKEYRAVKKELTEKRSPIHDTGIVDLHPLEDGLFRWSAVIRGPDQSPFEDAL 60

Query: 61  FQLAFSVPEQYPLQPPQVRFLT----------------------KIFHPNVHFKTGEICL 120
           ++L   +P  YPL PP+++F+                       K+ HPNV+FKTGEICL
Sbjct: 61  WKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICL 120

Query: 121 DILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMY 148
           DIL+  WSPAWTLQS   AI+ L+A+PEP SPLN D  NLL+  D   Y+ +   Y
Sbjct: 121 DILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTAYKDLVHYY 176

[Close]
BLAST of CmoCh12G002130 vs. Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.9e-28
Identity = 66/147 (44.90%), Postives = 95/147 (64.63%), Query Frame = 1 

Query: 7   RLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPL 66
           R+ KE + +  E V  P I+   D+SN   +  +I GP ++PFEGG F+L   +PE+YP+
Sbjct: 7   RIIKETQRLLAEPV--PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 66

Query: 67  QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
             P+VRF+TKI+HPNV  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  
Sbjct: 67  AAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 126

Query: 127 DSGNLLRSGDVRGYQSMARMYTRLAAM 154
           D     +S + +  ++ AR +TRL AM
Sbjct: 127 DVAEQWKSNEAQAIET-ARAWTRLYAM 149

[Close]
BLAST of CmoCh12G002130 vs. TrEMBL
Match: I3SC14_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 7.3e-87
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREK ADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV
Sbjct: 1   MQASRARLFKEYKEVQREKTADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. TrEMBL
Match: A0A0A0LLZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375190 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.6e-86
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAF+V
Sbjct: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFAV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGD RGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDARGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. TrEMBL
Match: A0A0B2QDV8_GLYSO (Protein PEROXIN-4 OS=Glycine soja GN=glysoja_025083 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.1e-86
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREK  DPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV
Sbjct: 1   MQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. TrEMBL
Match: D7SUC9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03690 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.1e-86
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREK ADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAF+V
Sbjct: 1   MQASRARLFKEYKEVQREKAADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFAV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGD+RGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDIRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. TrEMBL
Match: I1K9A6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G082900 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.1e-86
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREK  DPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV
Sbjct: 1   MQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. TAIR10
Match: AT5G25760.1 (AT5G25760.1 peroxin4)

HSP 1 Score: 319.3 bits (817), Expect = 1.3e-87
Identity = 150/157 (95.54%), Postives = 155/157 (98.73%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREKVADPDIQL+CDD+NIFKWTALIKGPSETP+EGGVFQLAFSV
Sbjct: 1   MQASRARLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PE YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGDVRG+ SMA+MYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. TAIR10
Match: AT5G53300.1 (AT5G53300.1 ubiquitin-conjugating enzyme 10)

HSP 1 Score: 124.0 bits (310), Expect = 8.1e-29
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 1 

Query: 7   RLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPL 66
           R+ KE K++Q++         V +D  +F W A I GPSE+P+ GGVF +    P  YP 
Sbjct: 5   RILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSESPYAGGVFLVTIHFPPDYPF 64

Query: 67  QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
           +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  
Sbjct: 65  KPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 124

Query: 127 DSGNLLRSGDVRGYQSMARMYTRLAAM 154
           +  ++ ++ D   Y+S AR +T+  AM
Sbjct: 125 EIAHMYKT-DKNKYESTARSWTQKYAM 147

[Close]
BLAST of CmoCh12G002130 vs. TAIR10
Match: AT4G27960.2 (AT4G27960.2 ubiquitin conjugating enzyme 9)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28
Identity = 61/153 (39.87%), Postives = 92/153 (60.13%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           ++ +  R+ KE K++Q++         V +D  +F W A I GPS++P+ GGVF +    
Sbjct: 29  LEMASKRILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYSGGVFLVTIHF 88

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P P
Sbjct: 89  PPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 148

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAM 154
           D PL  +  ++ ++ D   Y+S AR +T+  AM
Sbjct: 149 DDPLVPEIAHMYKT-DKNKYESTARTWTQKYAM 177

[Close]
BLAST of CmoCh12G002130 vs. TAIR10
Match: AT2G16740.1 (AT2G16740.1 ubiquitin-conjugating enzyme 29)

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-28
Identity = 62/149 (41.61%), Postives = 92/149 (61.74%), Query Frame = 1 

Query: 7   RLFKEYKEVQREKVADPDIQLVCDDS--NIFKWTALIKGPSETPFEGGVFQLAFSVPEQY 66
           R+ KE KE+QR    DP +      +  ++F W A I GP+E+P+ GGVF +    P  Y
Sbjct: 5   RILKELKELQR----DPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDY 64

Query: 67  PLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 126
           P +PP+V F TK+FHPN++   G ICLDILK+ WSPA T+  V  +I +L+  P PD PL
Sbjct: 65  PFKPPKVVFRTKVFHPNIN-SNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPL 124

Query: 127 NCDSGNLLRSGDVRGYQSMARMYTRLAAM 154
             +  ++ ++ D   Y++MAR +T+  A+
Sbjct: 125 VPEIAHIYKT-DKTKYEAMARSWTQKYAL 147

[Close]
BLAST of CmoCh12G002130 vs. TAIR10
Match: AT3G08690.1 (AT3G08690.1 ubiquitin-conjugating enzyme 11)

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-28
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 1 

Query: 7   RLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPL 66
           R+ KE K++Q++  ++     V +D  +F W A I GP E+P+ GGVF ++   P  YP 
Sbjct: 5   RILKELKDLQKDPPSNCSAGPVAED--MFHWQATIMGPPESPYAGGVFLVSIHFPPDYPF 64

Query: 67  QPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
           +PP+V F TK++HPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  
Sbjct: 65  KPPKVSFKTKVYHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 124

Query: 127 DSGNLLRSGDVRGYQSMARMYTRLAAM 154
           +  ++ ++ D   Y+S AR +T+  AM
Sbjct: 125 EIAHMYKT-DRSKYESTARSWTQKYAM 147

[Close]
BLAST of CmoCh12G002130 vs. NCBI nr
Match: gi|659088528|ref|XP_008445030.1| (PREDICTED: protein PEROXIN-4 [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 8.0e-87
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAF+V
Sbjct: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFAV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. NCBI nr
Match: gi|388499480|gb|AFK37806.1| (unknown [Lotus japonicus])

HSP 1 Score: 327.8 bits (839), Expect = 1.0e-86
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREK ADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV
Sbjct: 1   MQASRARLFKEYKEVQREKTADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. NCBI nr
Match: gi|1012259300|ref|XP_015945666.1| (PREDICTED: protein PEROXIN-4 [Arachis duranensis])

HSP 1 Score: 327.0 bits (837), Expect = 1.8e-86
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREK ADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV
Sbjct: 1   MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. NCBI nr
Match: gi|449465133|ref|XP_004150283.1| (PREDICTED: protein PEROXIN-4 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 2.3e-86
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAF+V
Sbjct: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFAV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGD RGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDARGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh12G002130 vs. NCBI nr
Match: gi|747070008|ref|XP_011081811.1| (PREDICTED: protein PEROXIN-4 isoform X1 [Sesamum indicum])

HSP 1 Score: 326.6 bits (836), Expect = 2.3e-86
Identity = 154/157 (98.09%), Postives = 157/157 (100.00%), Query Frame = 1 

Query: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSV 60
           MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETP++GGVFQLAFSV
Sbjct: 1   MQASRARLFKEYKEVQREKVADPDIQLVCDDSNIFKWTALIKGPSETPYDGGVFQLAFSV 60

Query: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120
           PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP
Sbjct: 61  PEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEP 120

Query: 121 DSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 158
           DSPLNCDSGNLLRSGD+RGYQSMARMYTRLAAMPKKG
Sbjct: 121 DSPLNCDSGNLLRSGDIRGYQSMARMYTRLAAMPKKG 157

The following BLAST results are available for this feature:
BLAST of CmoCh12G002130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PEX4_ARATH2.3e-8695.54Protein PEROXIN-4 OS=Arabidopsis thaliana GN=PEX4 PE=1 SV=1[more]
UBCX_DICDI1.1e-5162.76Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV... [more]
UBC16_SCHPO1.9e-3547.10Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe (strain 972 / AT... [more]
UBCX_PICAN1.5e-3239.20Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1[more]
UBE2N_RAT4.9e-2844.90Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1[more]
BLAST of CmoCh12G002130 vs. TrEMBL
Match NameE-valueIdentityDescription
I3SC14_LOTJA7.3e-8799.36Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0A0LLZ5_CUCSA1.6e-8698.73Uncharacterized protein OS=Cucumis sativus GN=Csa_2G375190 PE=3 SV=1[more]
A0A0B2QDV8_GLYSO2.1e-8698.73Protein PEROXIN-4 OS=Glycine soja GN=glysoja_025083 PE=3 SV=1[more]
D7SUC9_VITVI2.1e-8698.09Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03690 PE=3 SV=... [more]
I1K9A6_SOYBN2.1e-8698.73Uncharacterized protein OS=Glycine max GN=GLYMA_06G082900 PE=3 SV=1[more]
BLAST of CmoCh12G002130 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G25760.11.3e-8795.54 peroxin4[more]
AT5G53300.18.1e-2942.18 ubiquitin-conjugating enzyme 10[more]
AT4G27960.21.1e-2839.87 ubiquitin conjugating enzyme 9[more]
AT2G16740.12.4e-2841.61 ubiquitin-conjugating enzyme 29[more]
AT3G08690.15.2e-2840.82 ubiquitin-conjugating enzyme 11[more]
BLAST of CmoCh12G002130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088528|ref|XP_008445030.1|8.0e-8799.36PREDICTED: protein PEROXIN-4 [Cucumis melo][more]
gi|388499480|gb|AFK37806.1|1.0e-8699.36unknown [Lotus japonicus][more]
gi|1012259300|ref|XP_015945666.1|1.8e-8699.36PREDICTED: protein PEROXIN-4 [Arachis duranensis][more]
gi|449465133|ref|XP_004150283.1|2.3e-8698.73PREDICTED: protein PEROXIN-4 [Cucumis sativus][more]
gi|747070008|ref|XP_011081811.1|2.3e-8698.09PREDICTED: protein PEROXIN-4 isoform X1 [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
IPR023313UBQ-conjugating_AS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016567 protein ubiquitination
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G002130.1CmoCh12G002130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 7..147
score: 3.1
IPR000608Ubiquitin-conjugating enzyme E2PROFILEPS50127UBIQUITIN_CONJUGAT_2coord: 6..133
score: 36
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3DG3DSA:3.10.110.10coord: 2..153
score: 1.7
IPR016135Ubiquitin-conjugating enzyme/RWD-likeunknownSSF54495UBC-likecoord: 4..153
score: 1.7
IPR023313Ubiquitin-conjugating enzyme, active sitePROSITEPS00183UBIQUITIN_CONJUGAT_1coord: 78..94
scor
NoneNo IPR availablePANTHERPTHR24067UBIQUITIN-CONJUGATING ENZYME E2coord: 1..156
score: 7.9E
NoneNo IPR availablePANTHERPTHR24067:SF145SUBFAMILY NOT NAMEDcoord: 1..156
score: 7.9E
NoneNo IPR availableSMARTSM00212ubc_7coord: 6..153
score: 6.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G002130Cucsa.161400Cucumber (Gy14) v1cgycmoB0448
CmoCh12G002130CmaCh12G002600Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G002130CmaCh05G005990Cucurbita maxima (Rimu)cmacmoB767
CmoCh12G002130Cla022221Watermelon (97103) v1cmowmB134
CmoCh12G002130Csa2G375190Cucumber (Chinese Long) v2cmocuB149
CmoCh12G002130MELO3C011153Melon (DHL92) v3.5.1cmomeB151
CmoCh12G002130CSPI02G22370Wild cucumber (PI 183967)cmocpiB150
CmoCh12G002130Lsi08G010940Bottle gourd (USVL1VR-Ls)cmolsiB175
CmoCh12G002130Cp4.1LG11g05270Cucurbita pepo (Zucchini)cmocpeB148
CmoCh12G002130Cp4.1LG07g02260Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G002130MELO3C011153.2Melon (DHL92) v3.6.1cmomedB167
CmoCh12G002130CsaV3_2G031000Cucumber (Chinese Long) v3cmocucB0176
CmoCh12G002130Cla97C08G155510Watermelon (97103) v2cmowmbB178
CmoCh12G002130Bhi04G000686Wax gourdcmowgoB0205
CmoCh12G002130CsGy2G022130Cucumber (Gy14) v2cgybcmoB160
CmoCh12G002130Carg03851Silver-seed gourdcarcmoB1310
CmoCh12G002130Carg08285Silver-seed gourdcarcmoB0078
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh12G002130CmoCh05G006250Cucurbita moschata (Rifu)cmocmoB151
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G002130Cucumber (Chinese Long) v3cmocucB0195
CmoCh12G002130Watermelon (97103) v2cmowmbB151
CmoCh12G002130Wax gourdcmowgoB0218
CmoCh12G002130Cucumber (Gy14) v1cgycmoB0854
CmoCh12G002130Wild cucumber (PI 183967)cmocpiB167
CmoCh12G002130Cucumber (Chinese Long) v2cmocuB164
CmoCh12G002130Melon (DHL92) v3.5.1cmomeB159
CmoCh12G002130Watermelon (Charleston Gray)cmowcgB129
CmoCh12G002130Watermelon (Charleston Gray)cmowcgB161
CmoCh12G002130Watermelon (97103) v1cmowmB161
CmoCh12G002130Bottle gourd (USVL1VR-Ls)cmolsiB159
CmoCh12G002130Cucumber (Gy14) v2cgybcmoB274
CmoCh12G002130Melon (DHL92) v3.6.1cmomedB175