CmoCh05G006250 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G006250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUbiquitin-conjugating enzyme E2
LocationCmo_Chr05 : 3138899 .. 3142804 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAAAATAAAATAGAAAACTAATTAAATTCCGGAGTTTCGGCACCACGAGGCTACGAATTACCAAAGGCGGCCGGTAGTCTTGAAAAGGTTGCTGATACGATAGACCGCTGAGTAAGGCTTCGGCGCTTCTCCCTTTGCGCATCTCCGAGTTACCTCCAGCTGGTTTCCATTGATCGTGAGTGTTCTTATTGTTCTGTTTTGTATGAACTCCGATTTGTTCGAATTCTTGGTTCTTCTGCTTCTCGATGTCTAGTTGCTATCGATTTCTATCAATTTTGTCTATGAATTTCTCTTTCTTCATTTCTTTTCACCTCGAGTTTCTTCGCTAGGGTTTGATATTATGCATATAACAAATCCTTACGATTTTACTAATTATGATTTATTCTTGTATGGAGTTTTCTTTTTTCGTACTGGTTGCAGTACGTCGGCCGGTAATTTTGCTGGTTCGAGAATTCTAGGCTTGAAGCAGCTTGTCTCGTCTGGGAGAATCTATAATGCAGGTTAGCCACTATACTTAGTTATGTATATAATGAGTCCACATGAAGGGATCCGACTACGAGTATGTTGAGGATTGTTGGGAGTGAGTACCACGTTGGCCAATTTAGGGAATGATCATGTGTTTATAAGCAAAATACCTCTCTATTGGTATGAGGCATTTTGGGAAGCTCAAAGCAAAGCCACGAGAGCTTATGCTCATAGTAGACAATATCATACCATTGTGGAGAGTCATGATTCCTAACATGGTATTAGAGCCATGCCCTAAACCTAGCTATGACAATAGGATCCTCAAATATTGAACAAAAAATTGTGAGCCTTGAAGGTGTAGTCAAAAGTGACTAAAGTGTTGAACAAAGGGTGTACTTTGTTCGAGGGCTCTAGAGAAAGGAGTCGAGTCTCGATTAAGGGGAGACTTATAGTGTATTTTGTTCGAGTTGAGGATCGATGGGAGTGTGTCCCACATTGACTAATTTAGAGAATGATCATGGATTTATAAGTAAAGGAATATCTCTCCATTGGTATGAAGCCTTTTGGGGAAGTCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGAGTCGTGATTCCTAATAGAGTAGGGGTTCAGTCAAGTATCACGTCTGAGCCTTTGATTTTGTGTAGGCGTCAAGAGCAAGATTGTTCAAGGAGTACAAAGAGGTTCAAAGAGAAAAGGTAGCAGATCCAGATATTCAGTTGGTTTGTGACGATTCCAATATTTTTAAATGGATAGCGCTAATCAAGGTAACCCTCTCAATGATCCAGATGAAATATGTGGTTTCAGAGTTTTTCTTTTCTTTTTTTTTTTGCTTACCATGATTGATATGCATTTTTATTTAGGGACCATCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTATCCGTACCTGAGCAGTACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGGTAGAAGTTGCTCTGGTCCTTTTTCTAGATCCTATGCTGACTATGAGCCTTTAGAAAGAAAGAAGAATACACCAAAATGTAGGTGCTGTACCATTGTTGTAAGTGAATGTAATGAAAAGATCGATGCGAGCCACGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAATAGGGGTTAAGGTGGGCCGGTGACACGTAGGGAATAAGCTTGATCATGGGGGAGGAAAGGGCAACGCTAGGGGAGGGGGTACTGTTGTCCAAGGGAGAGTAGTGAGCAGCAGTATTTAGGTCGTTTTTTAATTAGTTAACAAATACCGTTGAGCATCTGTGCATGGAGGGGAATATGGTGGAGAATATATCAGAGTGAGATCCCGAGTGTCAGCGAGGATGTTGGGCCCTGAAGGGGATGGATTGCGAGATCCCACATCGGTTGGAAAGGGCAACAAAACATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGCTGACGCGTTTTAAAACCTCGAGGGGAAGTCTCGAAGGAAAAGTGCAAAGAGGACAATATCTGCTAGTTGTGAAGGTACACGGGAGTTGCAATGATGCTAGTGGTGGAGGTACCACGGGAGAAGAGTTTACGACAAGCAACCGGGTAAAAAGGAAGTGAACTCAATAGAAAGAAGCGACTGGGATTAGGAGTGGGAAGCTAGATATTTCGTGGACTGCTTTGTTCTTATGAGAGGAGTTCTTGTTGCAGAGCAATTCAGTGCATTAGTGAGTTGCAGTCTAAAGGGAGAAGGAGAGGTTCGGTATGATTTTGATGGGTGGCTTGGAGCCCGAAAGAGGGTGATCCGGTCACGGGACGAGTAGAGAACCCGAATATTCCTTATTCCAACCTTTGCAGAAGGCCATACTCAGTGAAAATTCATAGCTCTCCGGCCACTGGCATATGAAGTGCTTGTGTAACGCCATTGATTGAATTAGTATAAGTTGCATTCTTTGCTATGAACTATATTGATGAATAGTGATCATTCAAGTTCGCCGACCCCTTTTGTGATTGTAGTCTTAGTTTACAGTGAACCTTATTTTTAATACACGAATCGAACCACACTTATACTTATCGATGTACGTCGTTCCTGCAGACGGGTGAGATCTGCCTAGACATATTGAAGAACGCATGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATCGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGTGAGTTTTCATGGATTCCTTATGATGAATTTTCCTGATTTATTTGTTCATTTATTTGAATCTTTGTGATGGCGTGATAATGTAGCAAAGTAGTTAATTGATCTGAAAACTGCTTCTGGTTGGCGATTGAATTAGTTCATCATTCCTAAACCATTCTTTTGGAGAATGATTTGCATAATAGTTAAGAATAGATGCAAAAATTATGGGACGAACACTGAGCTAGTCGCTTGAATCTATAGGCTACCTCTCCTCGATCAAACAAACTCTGAATTTCATAAGAGAATCAAGATCGTAGTTGCATCAGTTTGGCTCGGGTCTAGGCCGATACTGATGTAAACTAGCTTATCGATTTATGAATATAAAAACCCAATAAGACTAAACCAGTTGAGTTCAGTTGTATATTTTTAAATTGAATCGATTATCAATCTCGAGATATTGGGGAATTTCACTCCTTAGGAAGGCGTTGTGCATTGTAAGCCAGCTTCAAGGAGGCAACTAGAATTCAATTTTTAATGATTACGGCTCCGTTTGATAACTATTTAGTTTTTAGTTTATGAAAAGTGTGCTTATTTTCTCGTAATTTCTTTAGAATGATTTTTGTCTTTCTGAAGGCAATATTTTGGTGAAAGTTGTGTTTATAAGCTAAATTTCCAAAATAAAAAATCGAAAAGGCTCGAACTTAGGTCTGGGGTGATTCAACTTAAGACCTTGGAGAGAATCTCCGAACATTCTAGGCACAACGGTATCATTTGGAGGTGAAATAATTGAAGCGTGTTGCTCGGTTTCATAAACTTTTTTCGGGATCAAACCCCGGTAACACATATAAAGCAATGCGAGTGATCTTCAATTCTTCTGACCGATTGTTTGGGTGTTTACAGGAAACCTTCTGCGTTCGGGCGATGTCCGAGGTTATCAATCAATGGCAAGGATGTACACAAGGCTGGCTGCCATGCCCAAAAAGGGCTGACTTTCCATTGCTTCTTCTTAGTCAAACATTTGAATTTGAGGTTAGCTGCTGTCATCAAGGTGACCGTAGAATGTGTTCATGGCCATACCTACGAATTTGATGATCCAGACATCTTATGTAAAGTAAAGCACATTCCATCTTTTTTATTTTTATTTTTATTTTTA

mRNA sequence

TAGAAAATAAAATAGAAAACTAATTAAATTCCGGAGTTTCGGCACCACGAGGCTACGAATTACCAAAGGCGGCCGGTAGTCTTGAAAAGGTTGCTGATACGATAGACCGCTGAGTAAGGCTTCGGCGCTTCTCCCTTTGCGCATCTCCGAGTTACCTCCAGCTGGTTTCCATTGATCTTTTCTTTTTTCGTACTGGTTGCAGTACGTCGGCCGGTAATTTTGCTGGTTCGAGAATTCTAGGCTTGAAGCAGCTTGTCTCGTCTGGGAGAATCTATAATGCAGGGACCATCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTATCCGTACCTGAGCAGTACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGACGGGTGAGATCTGCCTAGACATATTGAAGAACGCATGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATCGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGAAACCTTCTGCGTTCGGGCGATGTCCGAGGTTATCAATCAATGGCAAGGATGTACACAAGGCTGGCTGCCATGCCCAAAAAGGGCTGACTTTCCATTGCTTCTTCTTAGTCAAACATTTGAATTTGAGGTTAGCTGCTGTCATCAAGGTGACCGTAGAATGTGTTCATGGCCATACCTACGAATTTGATGATCCAGACATCTTATGTAAAGTAAAGCACATTCCATCTTTTTTATTTTTATTTTTATTTTTA

Coding sequence (CDS)

ATGCAGGGACCATCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTATCCGTACCTGAGCAGTACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAAATTTTCCATCCAAATGTTCATTTTAAGACGGGTGAGATCTGCCTAGACATATTGAAGAACGCATGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATCGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGAAACCTTCTGCGTTCGGGCGATGTCCGAGGTTATCAATCAATGGCAAGGATGTACACAAGGCTGGCTGCCATGCCCAAAAAGGGCTGA
Homology
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BLAST of CmoCh05G006250 vs. Swiss-Prot
Match: PEX4_ARATH (Protein PEROXIN-4 OS=Arabidopsis thaliana GN=PEX4 PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-61
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETP+EGGVFQLA SVPE YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRG+ SMA+MYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh05G006250 vs. Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-43
Identity = 75/110 (68.18%), Postives = 97/110 (88.18%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GP +TP+E G F+L +SVP  YPLQPP ++F+TKIFHPN+HFKTGEICLD+LK +WS 
Sbjct: 37  IKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSA 96

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRL 111
            +TLQSVCR+IIAL++ PE DSPLNCD+GNL+R+GDV+G+ S+ARMYTRL
Sbjct: 97  IYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRL 146

[Close]
BLAST of CmoCh05G006250 vs. Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc16 PE=3 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-30
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GP+ETP+EGG + L + V E YP+ PP V F TKI HPN+ +  GE+C+DILK  WSP
Sbjct: 41  IEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPK 116
           AW+LQS C AII+L+++ +  SPLN D+  LLR+GD   Y S+ R  T L A  K
Sbjct: 101 AWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKGK 155

[Close]
BLAST of CmoCh05G006250 vs. Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.3e-27
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLT----------------------KIF 60
           ++GP ++PFE  +++L + +P  YPL PP+++F+                       K+ 
Sbjct: 48  IRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMP 107

Query: 61  HPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVR 108
           HPNV+FKTGEICLDIL+  WSPAWTLQS   AI+ L+A+PEP SPLN D  NLL+  D  
Sbjct: 108 HPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTT 167

[Close]
BLAST of CmoCh05G006250 vs. Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.0e-25
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 1 

Query: 3   GPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAW 62
           GP ++PFEGG F+L L +PE+YP+  P+VRF+TKI+HPNV  K G ICLDILK+ WSPA 
Sbjct: 41  GPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPAL 100

Query: 63  TLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAM 114
            +++V  +I AL++ P PD PL  D     +S + +  ++ AR +TRL AM
Sbjct: 101 QIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIET-ARAWTRLYAM 149

[Close]
BLAST of CmoCh05G006250 vs. TrEMBL
Match: I1K9A6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G082900 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 7.9e-62
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh05G006250 vs. TrEMBL
Match: A0A0B2QDV8_GLYSO (Protein PEROXIN-4 OS=Glycine soja GN=glysoja_025083 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 7.9e-62
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh05G006250 vs. TrEMBL
Match: I3SC14_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 7.9e-62
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh05G006250 vs. TrEMBL
Match: A0A151TDR4_CAJCA (Putative ubiquitin carrier protein E2 21 OS=Cajanus cajan GN=KK1_011407 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 7.9e-62
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 251 IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 310

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 311 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 367

[Close]
BLAST of CmoCh05G006250 vs. TrEMBL
Match: A0A068V6B4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017256001 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.0e-61
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGD+RGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh05G006250 vs. TAIR10
Match: AT5G25760.1 (AT5G25760.1 peroxin4)

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-62
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETP+EGGVFQLA SVPE YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRG+ SMA+MYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh05G006250 vs. TAIR10
Match: AT1G16890.3 (AT1G16890.3 ubiquitin-conjugating enzyme 36)

HSP 1 Score: 110.9 bits (276), Expect = 5.3e-25
Identity = 53/110 (48.18%), Postives = 79/110 (71.82%), Query Frame = 1 

Query: 3   GPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAW 62
           GP+++P+EGGVF+L L +PE+YP+  P+VRFLTKI+HPN+  K G ICLDILK+ WSPA 
Sbjct: 52  GPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPAL 111

Query: 63  TLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAA 113
            +++V  +I AL++ P PD PL+ +     +S +    ++ A+ +TRL A
Sbjct: 112 QIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVET-AKEWTRLYA 159

[Close]
BLAST of CmoCh05G006250 vs. TAIR10
Match: AT5G53300.1 (AT5G53300.1 ubiquitin-conjugating enzyme 10)

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-24
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           + GPSE+P+ GGVF + +  P  YP +PP+V F TK+FHPN++   G ICLDILK  WSP
Sbjct: 37  IMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSP 96

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAM 114
           A T+  V  +I +L+  P PD PL  +  ++ ++ D   Y+S AR +T+  AM
Sbjct: 97  ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKNKYESTARSWTQKYAM 147

[Close]
BLAST of CmoCh05G006250 vs. TAIR10
Match: AT4G27960.2 (AT4G27960.2 ubiquitin conjugating enzyme 9)

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-24
Identity = 50/113 (44.25%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           + GPS++P+ GGVF + +  P  YP +PP+V F TK+FHPN++   G ICLDILK  WSP
Sbjct: 67  IMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSP 126

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAM 114
           A T+  V  +I +L+  P PD PL  +  ++ ++ D   Y+S AR +T+  AM
Sbjct: 127 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKNKYESTARTWTQKYAM 177

[Close]
BLAST of CmoCh05G006250 vs. TAIR10
Match: AT1G64230.4 (AT1G64230.4 ubiquitin-conjugating enzyme 28)

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-24
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           + GPS++P+ GGVF + +  P  YP +PP+V F TK+FHPNV+   G ICLDILK  WSP
Sbjct: 79  IMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVN-SNGSICLDILKEQWSP 138

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAM 114
           A T+  V  +I +L+  P PD PL  +  ++ ++ D   Y+S AR +T+  AM
Sbjct: 139 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYESTARSWTQKYAM 189

[Close]
BLAST of CmoCh05G006250 vs. NCBI nr
Match: gi|734366760|gb|KHN18193.1| (Protein PEROXIN-4 [Glycine soja])

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh05G006250 vs. NCBI nr
Match: gi|1012259300|ref|XP_015945666.1| (PREDICTED: protein PEROXIN-4 [Arachis duranensis])

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh05G006250 vs. NCBI nr
Match: gi|388499480|gb|AFK37806.1| (unknown [Lotus japonicus])

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 157

[Close]
BLAST of CmoCh05G006250 vs. NCBI nr
Match: gi|1012353991|gb|KYP65178.1| (putative ubiquitin carrier protein E2 21 [Cajanus cajan])

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-61
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 251 IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 310

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG
Sbjct: 311 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 367

[Close]
BLAST of CmoCh05G006250 vs. NCBI nr
Match: gi|661880151|emb|CDP16171.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 243.8 bits (621), Expect = 1.5e-61
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MQGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 60
           ++GPSETPFEGGVFQLA SVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP
Sbjct: 41  IKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP 100

Query: 61  AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 118
           AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGD+RGYQSMARMYTRLAAMPKKG
Sbjct: 101 AWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGYQSMARMYTRLAAMPKKG 157

The following BLAST results are available for this feature:
BLAST of CmoCh05G006250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PEX4_ARATH2.5e-6193.16Protein PEROXIN-4 OS=Arabidopsis thaliana GN=PEX4 PE=1 SV=1[more]
UBCX_DICDI1.4e-4368.18Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV... [more]
UBC16_SCHPO3.0e-3052.17Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe (strain 972 / AT... [more]
UBCX_PICAN5.3e-2743.41Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1[more]
UBE2N_RAT5.0e-2550.45Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1[more]
BLAST of CmoCh05G006250 vs. TrEMBL
Match NameE-valueIdentityDescription
I1K9A6_SOYBN7.9e-6297.44Uncharacterized protein OS=Glycine max GN=GLYMA_06G082900 PE=3 SV=1[more]
A0A0B2QDV8_GLYSO7.9e-6297.44Protein PEROXIN-4 OS=Glycine soja GN=glysoja_025083 PE=3 SV=1[more]
I3SC14_LOTJA7.9e-6297.44Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A151TDR4_CAJCA7.9e-6297.44Putative ubiquitin carrier protein E2 21 OS=Cajanus cajan GN=KK1_011407 PE=3 SV=... [more]
A0A068V6B4_COFCA1.0e-6196.58Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017256001 PE=3 SV=1[more]
BLAST of CmoCh05G006250 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G25760.11.4e-6293.16 peroxin4[more]
AT1G16890.35.3e-2548.18 ubiquitin-conjugating enzyme 36[more]
AT5G53300.12.0e-2445.13 ubiquitin-conjugating enzyme 10[more]
AT4G27960.23.4e-2444.25 ubiquitin conjugating enzyme 9[more]
AT1G64230.44.5e-2445.13 ubiquitin-conjugating enzyme 28[more]
BLAST of CmoCh05G006250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|734366760|gb|KHN18193.1|1.1e-6197.44Protein PEROXIN-4 [Glycine soja][more]
gi|1012259300|ref|XP_015945666.1|1.1e-6197.44PREDICTED: protein PEROXIN-4 [Arachis duranensis][more]
gi|388499480|gb|AFK37806.1|1.1e-6197.44unknown [Lotus japonicus][more]
gi|1012353991|gb|KYP65178.1|1.1e-6197.44putative ubiquitin carrier protein E2 21 [Cajanus cajan][more]
gi|661880151|emb|CDP16171.1|1.5e-6196.58unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
IPR023313UBQ-conjugating_AS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0016567 protein ubiquitination
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G006250.1CmoCh05G006250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 1..107
score: 8.2
IPR000608Ubiquitin-conjugating enzyme E2PROFILEPS50127UBIQUITIN_CONJUGAT_2coord: 1..93
score: 3
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3DG3DSA:3.10.110.10coord: 2..113
score: 1.5
IPR016135Ubiquitin-conjugating enzyme/RWD-likeunknownSSF54495UBC-likecoord: 3..113
score: 1.26
IPR023313Ubiquitin-conjugating enzyme, active sitePROSITEPS00183UBIQUITIN_CONJUGAT_1coord: 38..54
scor
NoneNo IPR availablePANTHERPTHR24067UBIQUITIN-CONJUGATING ENZYME E2coord: 1..116
score: 2.8
NoneNo IPR availablePANTHERPTHR24067:SF145SUBFAMILY NOT NAMEDcoord: 1..116
score: 2.8
NoneNo IPR availableSMARTSM00212ubc_7coord: 1..113
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G006250Cucsa.161400Cucumber (Gy14) v1cgycmoB0461
CmoCh05G006250CmaCh12G002600Cucurbita maxima (Rimu)cmacmoB194
CmoCh05G006250Cla022221Watermelon (97103) v1cmowmB746
CmoCh05G006250Csa2G375190Cucumber (Chinese Long) v2cmocuB778
CmoCh05G006250MELO3C011153Melon (DHL92) v3.5.1cmomeB719
CmoCh05G006250CSPI02G22370Wild cucumber (PI 183967)cmocpiB783
CmoCh05G006250Lsi08G010940Bottle gourd (USVL1VR-Ls)cmolsiB728
CmoCh05G006250Cp4.1LG07g02260Cucurbita pepo (Zucchini)cmocpeB747
CmoCh05G006250Cp4.1LG11g05270Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G006250MELO3C011153.2Melon (DHL92) v3.6.1cmomedB816
CmoCh05G006250CsaV3_2G031000Cucumber (Chinese Long) v3cmocucB0919
CmoCh05G006250Cla97C08G155510Watermelon (97103) v2cmowmbB800
CmoCh05G006250Bhi04G000686Wax gourdcmowgoB0946
CmoCh05G006250CsGy2G022130Cucumber (Gy14) v2cgybcmoB239
CmoCh05G006250Carg03851Silver-seed gourdcarcmoB1318
CmoCh05G006250Carg08285Silver-seed gourdcarcmoB0087
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh05G006250CmoCh12G002130Cucurbita moschata (Rifu)cmocmoB151
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G006250Cucumber (Chinese Long) v3cmocucB0929
CmoCh05G006250Watermelon (97103) v2cmowmbB779
CmoCh05G006250Wax gourdcmowgoB0961
CmoCh05G006250Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G006250Watermelon (Charleston Gray)cmowcgB713
CmoCh05G006250Bottle gourd (USVL1VR-Ls)cmolsiB718
CmoCh05G006250Melon (DHL92) v3.6.1cmomedB820