Carg08143 (gene) Silver-seed gourd

Overview
NameCarg08143
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPRKR-interacting protein 1
LocationCucurbita_argyrosperma_scaffold_050 : 953088 .. 956069 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATTCAAAATTATCAAATTTAAAATGGACCTTTTGTTCAACACAAAAACTGTCAGTTTAATCGAATTCGTAGGGCGCGGAACGGAGGCGGCGAAAATCCACAGCTCTTCGACGACCGACAAAGATAAAGAATCGGTAGTTCACTGGAAGGTCGAAGAAACATTGCTGTTAGGGTAACAACCAGAAATTTTTGTTGATTGTTAGAGGAAATTTTCACAATTAGGGTTTTAGGGTTTCTGGAATATCATGTCATCCGGCAAGCTGAAGGATGGGGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGACGAACGCGCTTGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCGGGTGATTTTCACCAGGTACTTGAGTGATTTATGTTGTTTTATATTGCGTAAATTTTATTAGTGACTTCTGTCTGCGGTTTATTCTATCGTGGGCGTGTTTTCATGATGAATGGATGTAAAATTGTACCATTGCATTACTGGGATTGGTTAGCAACGAGTGTGATTCCTATCTTAGGTCTTATGATATGAAACAAACTGGTTTCCGTACATTACAGGTTCTTTAAATTCTTGCGACTGTTAGCTGGTAATGAGTGGAAGAACTGATTATTGGGGGAATTAGGCTGGGTGTGAACAACAATATTTCCCTTACCAAAGGTGTGAAAATCCAGACTATTACTGAATAAGGACGATGCCCCTTTCTTTGATGGAAATTTGAGTGAACAAAATTCCTATATTGGGTTTAGCTCATGGATGATTTTTTTCTTTTAATATATGGACGAAGGGGAGACATAGGGTTGGTGGGATGATTACAAAAATGTTCATAAACGAGTTGGAAAAGGTAGAATCCAAACCTGGCAAAAAGAGATAACGTACCTTGTTGGATTACAACTTTTAGATTTATGAGATCGGATGTTTGTAGATAATTGTAAAATCAGAACACTTAACTAGCTTATTGTGGTGGATTTCAAATTGTGTATTTGGCTCACAGTCGGATACAAGATAGTCGGTGTTCTTTTTAACTGGATGAAGCTTTTTTTCATTTACCATGTTAATATGTTGTTGTTATGCGTGATATATCATATATTTGATTAAAATGTTGTTATTAATTGTATGCTCACGCGGGAGTAGCATAGCAACTTAGCATTAACTATATGCTAGTTGGTTAGTACTTTCTTTACGATCAGATAATGTCTATGCTGAAGCTAAGACTTACTGGCTTCACCTTTTAGATTTTCACAGTGAAGAAAGTTTAAAATTATGGTGTGCTAGTTTGAGATTCAAAGCTGACTGCTGCCAAGCAGAATTTGATTTATTGGAGAGTTTGAAATGGATTGGAGCGATGATTTGTTCCACGCACTCGAATTTACGTATGACCTATCAAAGTTAGGTCGTTGGGGATACCATTAGGAAGTAATGATCGTTGAGTAGCAGTAGAGGGTTGACAAGTACTCTGTTTGCAAGCAATGCTCTGAAATCTTAGCTCGTGAAAATGCATCGCTTGCTTTGTTAGTTTTTGGTGTCGTCTAAGAAGGGTTAATGTCATTTAATATAAGTCAAAAGGACGAGGTTTATAAAAATACTGTTCGACGTGAAATAAATTCTTTAGTCTGGTGTTAAATGGGTCTTTCATATTTCGAATCTTGATGTAGTTAAGAAAGGTAATGTATTACAATCGGGAATTGAAAGTTTTTACCTACTCAAACATCATCGGATGATTCTGATGTGTTTAGGAAAGAAAGTCTCCACTTGTGTTGTTAAGCCTACAATTTTCACTTCAGATTGTAAATGCATCAGACCTACCTTTTTGTTTGATCTATTTATTTTCCTCTCCATCCTTGATAATGAGCAACTGTTTGCGAGTTTGTGGAATCTGTCTCGATCGTTGAATATATATACTAATACGGGCCTGCCCATCAAATTTTCGAATGACAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAATTGAATTCAGGCGGAGGAGATGAGAATCAGAAAGATGCATCCTCTGGTGATGATGGGGATACCGATAATGGCGAGGATGAAGCAACATGACTCGTTATTCTCCACCCGGAATCGAAGTTTGAACTCTTAGCCTCGAGCTTTCAGACGAGCCATCTAACCGGAGACAGCCACCAGTCTGCCTACTTGACATTTTACGGGTCCGTAATTCCTTATATAAATTGTAGTACCTGGAATCTGGCTTTTGTGTTTTTATTGCAGGTGGGATTGGAAGAATGATGCATTTGAATACACAATTCTCCCATCTTCCCACAGGACCTCTATCTTTCTCTCAATTGCATGGCGCTGAAATGTGTTAGCAGAATATCTATAACATTATTACATGTTGAACAGATTGACATAATATTAGTCGAGTCCGAGGGATACTCATGATTGTGTTATAACGATTCGTTGCTTATGATATATGAACAGAGGGGACGTTGATCTACGATCAGACAACCCTGACATGCTCGTAGAAACACTGACTATATCATTCATATTGAACGCTCATTAGGCTCATATCCTGTTGCTTAGATGCTCACGCGGGCCTAACATAGCACGAAACACATCTCTTAGGCGTTCACACGGGTTTAGTGTACCCGTGCACAATCCCTCTGAAGGAGAACGATAATCTGGATTTTCCTCCCTATAAGTATCTCATACATACTAAGCTAATAATGCTTTTCTCGA

mRNA sequence

AGATTCAAAATTATCAAATTTAAAATGGACCTTTTGTTCAACACAAAAACTGTCAGTTTAATCGAATTCGTAGGGCGCGGAACGGAGGCGGCGAAAATCCACAGCTCTTCGACGACCGACAAAGATAAAGAATCGGTAGTTCACTGGAAGGTCGAAGAAACATTGCTGTTAGGGTAACAACCAGAAATTTTTGTTGATTGTTAGAGGAAATTTTCACAATTAGGGTTTTAGGGTTTCTGGAATATCATGTCATCCGGCAAGCTGAAGGATGGGGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGACGAACGCGCTTGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCGGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAATTGAATTCAGGCGGAGGAGATGAGAATCAGAAAGATGCATCCTCTGGTGATGATGGGGATACCGATAATGGCGAGGATGAAGCAACATGACTCGTTATTCTCCACCCGGAATCGAAGTTTGAACTCTTAGCCTCGAGCTTTCAGACGAGCCATCTAACCGGAGACAGCCACCAGTCTGCCTACTTGACATTTTACGGGTCCGTAATTCCTTATATAAATTGTAGTACCTGGAATCTGGCTTTTGTGTTTTTATTGCAGGTGGGATTGGAAGAATGATGCATTTGAATACACAATTCTCCCATCTTCCCACAGGACCTCTATCTTTCTCTCAATTGCATGGCGCTGAAATGTGTTAGCAGAATATCTATAACATTATTACATGTTGAACAGATTGACATAATATTAGTCGAGTCCGAGGGATACTCATGATTGTGTTATAACGATTCGTTGCTTATGATATATGAACAGAGGGGACGTTGATCTACGATCAGACAACCCTGACATGCTCGTAGAAACACTGACTATATCATTCATATTGAACGCTCATTAGGCTCATATCCTGTTGCTTAGATGCTCACGCGGGCCTAACATAGCACGAAACACATCTCTTAGGCGTTCACACGGGTTTAGTGTACCCGTGCACAATCCCTCTGAAGGAGAACGATAATCTGGATTTTCCTCCCTATAAGTATCTCATACATACTAAGCTAATAATGCTTTTCTCGA

Coding sequence (CDS)

ATGTCATCCGGCAAGCTGAAGGATGGGGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGACGAACGCGCTTGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCGGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAATTGAATTCAGGCGGAGGAGATGAGAATCAGAAAGATGCATCCTCTGGTGATGATGGGGATACCGATAATGGCGAGGATGAAGCAACATGA

Protein sequence

MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDDGDTDNGEDEAT
Homology
[Close]
BLAST of Carg08143 vs. NCBI nr
Match: XP_023512975.1 (PRKR-interacting protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 169/173 (97.69%), Postives = 170/173 (98.27%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MS+GKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRXXXXXXXX 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRXXXXXXXX
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTDNGEDEAT 174
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DTDNGEDEAT
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEGDTDNGEDEAT 173

[Close]
BLAST of Carg08143 vs. NCBI nr
Match: XP_022941948.1 (PRKR-interacting protein 1 [Cucurbita moschata])

HSP 1 Score: 216.9 bits (551), Expect = 5.6e-53
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MS+GKLKDGDRRLVIPMPPKPKSDTQLATTE+NALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRXXXXXXXX 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRXXXXXXXX
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTDNGEDEAT 174
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DTDNGEDEAT
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDTDNGEDEAT 173

[Close]
BLAST of Carg08143 vs. NCBI nr
Match: XP_022983002.1 (PRKR-interacting protein 1 [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 5.6e-53
Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MS+GKLKDGDRRLVIPMPPKPKSDTQLATTE+NALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRXXXXXXXX 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRXXXXXXXX
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTDNGEDEAT 174
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DTDNGEDEAT
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTDNGEDEAT 173

[Close]
BLAST of Carg08143 vs. NCBI nr
Match: XP_008456169.1 (PREDICTED: PRKR-interacting protein 1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 6.8e-51
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MS+GKLKDG+RRLVIPMPPKPK +TQLATTE+NALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 112

[Close]
BLAST of Carg08143 vs. NCBI nr
Match: XP_011651236.1 (PREDICTED: PRKR-interacting protein 1 [Cucumis sativus] >KGN57498.1 hypothetical protein Csa_3G199600 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 8.9e-51
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MS+GKLKDG+RRLVIPMPPKPK DTQLAT E+NALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPDTQLATAESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 112

[Close]
BLAST of Carg08143 vs. TAIR10
Match: AT2G15270.1 (unknown protein)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-29
Identity = 70/115 (60.87%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVI--PMPPKPKSDTQLATTETNALVAYTPPVK-EEDEDLEVKLRRII 60
           MSSGK K GD RLV+                        Y PPV  E++EDLEVKLRRI+
Sbjct: 1   MSSGKPKQGDTRLVVAAXXXXXXXXXXXXXXXXXXXXXEYKPPVMLEDEEDLEVKLRRIL 60

Query: 61  DNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
           +NVPVRVSNTSGSSAGSGSGDFHQYRQMRR+EQDRL RMD+DY K+ ++AEF +R
Sbjct: 61  ENVPVRVSNTSGSSAGSGSGDFHQYRQMRRREQDRLTRMDIDYNKRLKMAEFTIR 115

[Close]
BLAST of Carg08143 vs. Swiss-Prot
Match: sp|Q9H875|PKRI1_HUMAN (PRKR-interacting protein 1 OS=Homo sapiens OX=9606 GN=PRKRIP1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.9e-06
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 0 

Query: 18  PPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKR 112

[Close]
BLAST of Carg08143 vs. Swiss-Prot
Match: sp|Q9CWV6|PKRI1_MOUSE (PRKR-interacting protein 1 OS=Mus musculus OX=10090 GN=Prkrip1 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 5.9e-06
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 0 

Query: 18  PPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMNEWAPRA 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKR 112

[Close]
BLAST of Carg08143 vs. Swiss-Prot
Match: sp|Q5R5J3|PKRI1_PONAB (PRKR-interacting protein 1 OS=Pongo abelii OX=9601 GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.9e-06
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 0 

Query: 18  PPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKR 112

[Close]
BLAST of Carg08143 vs. Swiss-Prot
Match: sp|Q2KIT1|PKRI1_BOVIN (PRKR-interacting protein 1 OS=Bos taurus OX=9913 GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.8e-06
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 0 

Query: 18  PPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQALIIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLEAEFQKR 112

[Close]
BLAST of Carg08143 vs. Swiss-Prot
Match: sp|Q5ZKU0|PKRI1_CHICK (PRKR-interacting protein 1 homolog OS=Gallus gallus OX=9031 GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.6e-04
Identity = 35/111 (31.53%), Postives = 51/111 (45.95%), Query Frame = 0 

Query: 16  PMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNVPVR------------ 75
           P PP+P+ + Q      NA        +E+   LE  +R     VP+             
Sbjct: 7   PRPPRPRKEPQPLVIPRNA-------AEEQRLRLERLMRNPEKTVPIPEKLNEWAPRPPP 66

Query: 76  --VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
             V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K++   EF  +
Sbjct: 67  EFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDFMDAMAEKQRLDEEFQKK 110

[Close]
BLAST of Carg08143 vs. TrEMBL
Match: tr|A0A1S3C2Q3|A0A1S3C2Q3_CUCME (PRKR-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103496186 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.5e-51
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MS+GKLKDG+RRLVIPMPPKPK +TQLATTE+NALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 112

[Close]
BLAST of Carg08143 vs. TrEMBL
Match: tr|A0A0A0L705|A0A0A0L705_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199600 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.9e-51
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MS+GKLKDG+RRLVIPMPPKPK DTQLAT E+NALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPDTQLATAESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 112

[Close]
BLAST of Carg08143 vs. TrEMBL
Match: tr|A0A1S2Y0Q0|A0A1S2Y0Q0_CICAR (PRKR-interacting protein 1 OS=Cicer arietinum OX=3827 GN=LOC101509933 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPV-KEEDEDLEVKLRRIIDN 60
           MS+GK KD D ++V+  P K K     ATT +NA+V YTPPV KEE+EDLE+KLRRIIDN
Sbjct: 1   MSTGKPKDSDFQVVV-APGKSKPPLPPATT-SNAIVEYTPPVFKEEEEDLEIKLRRIIDN 60

Query: 61  VPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
           VPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARM+VDYQ++KE+AEF+MR
Sbjct: 61  VPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMEVDYQRRKELAEFSMR 111

[Close]
BLAST of Carg08143 vs. TrEMBL
Match: tr|A0A0B0P818|A0A0B0P818_GOSAR (PRKR-interacting 1 OS=Gossypium arboreum OX=29729 GN=F383_07187 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 83/117 (70.94%), Postives = 92/117 (78.63%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVI-----PMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRR 60
           MS+G+ KDGD +L +      +PP+P S T  A  E        P  KEE+EDLEVKLRR
Sbjct: 1   MSTGRPKDGDTQLAVVEPKSGLPPRPPSTTSTAIVEYE-----KPAFKEEEEDLEVKLRR 60

Query: 61  IIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
           II+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQK+KEIAEFNMR
Sbjct: 61  IIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKRKEIAEFNMR 112

[Close]
BLAST of Carg08143 vs. TrEMBL
Match: tr|A0A1U8MBW4|A0A1U8MBW4_GOSHI (PRKR-interacting protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107935025 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 83/117 (70.94%), Postives = 92/117 (78.63%), Query Frame = 0 

Query: 1   MSSGKLKDGDRRLVI-----PMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRR 60
           MS+G+ KDGD +L +      +PP+P S T  A  E        P  KEE+EDLEVKLRR
Sbjct: 1   MSTGRPKDGDTQLAVVEPKSGLPPRPPSTTSTAIVEYE-----KPAFKEEEEDLEVKLRR 60

Query: 61  IIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 113
           II+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQK+KEIAEFNMR
Sbjct: 61  IIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKRKEIAEFNMR 112

The following BLAST results are available for this feature:
BLAST of Carg08143 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023512975.11.9e-5397.69PRKR-interacting protein 1 [Cucurbita pepo subsp. pepo][more]
XP_022941948.15.6e-5397.69PRKR-interacting protein 1 [Cucurbita moschata][more]
XP_022983002.15.6e-5398.27PRKR-interacting protein 1 [Cucurbita maxima][more]
XP_008456169.16.8e-5194.64PREDICTED: PRKR-interacting protein 1 [Cucumis melo][more]
XP_011651236.18.9e-5194.64PREDICTED: PRKR-interacting protein 1 [Cucumis sativus] >KGN57498.1 hypothetical... [more]
BLAST of Carg08143 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G15270.14.0e-2960.87unknown protein[more]
BLAST of Carg08143 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9H875|PKRI1_HUMAN5.9e-0634.51PRKR-interacting protein 1 OS=Homo sapiens OX=9606 GN=PRKRIP1 PE=1 SV=1[more]
sp|Q9CWV6|PKRI1_MOUSE5.9e-0634.51PRKR-interacting protein 1 OS=Mus musculus OX=10090 GN=Prkrip1 PE=1 SV=2[more]
sp|Q5R5J3|PKRI1_PONAB5.9e-0634.51PRKR-interacting protein 1 OS=Pongo abelii OX=9601 GN=PRKRIP1 PE=2 SV=1[more]
sp|Q2KIT1|PKRI1_BOVIN7.8e-0634.51PRKR-interacting protein 1 OS=Bos taurus OX=9913 GN=PRKRIP1 PE=2 SV=1[more]
sp|Q5ZKU0|PKRI1_CHICK5.6e-0431.53PRKR-interacting protein 1 homolog OS=Gallus gallus OX=9031 GN=PRKRIP1 PE=2 SV=1[more]
BLAST of Carg08143 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C2Q3|A0A1S3C2Q3_CUCME4.5e-5194.64PRKR-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103496186 PE=4 SV=1[more]
tr|A0A0A0L705|A0A0A0L705_CUCSA5.9e-5194.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199600 PE=4 SV=1[more]
tr|A0A1S2Y0Q0|A0A1S2Y0Q0_CICAR1.0e-3475.22PRKR-interacting protein 1 OS=Cicer arietinum OX=3827 GN=LOC101509933 PE=4 SV=1[more]
tr|A0A0B0P818|A0A0B0P818_GOSAR1.5e-3370.94PRKR-interacting 1 OS=Gossypium arboreum OX=29729 GN=F383_07187 PE=4 SV=1[more]
tr|A0A1U8MBW4|A0A1U8MBW4_GOSHI1.5e-3370.94PRKR-interacting protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107935025 PE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009548DUF1168
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08143-RACarg08143-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 112..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..142
IPR009548Protein of unknown function DUF1168PFAMPF06658DUF1168coord: 54..170
e-value: 8.7E-28
score: 96.7
IPR009548Protein of unknown function DUF1168PANTHERPTHR13507UNCHARACTERIZEDcoord: 24..170

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg08143Cla013097Watermelon (97103) v1carwmB0371
Carg08143Csa3G199600Cucumber (Chinese Long) v2carcuB0400
Carg08143MELO3C019546Melon (DHL92) v3.5.1carmeB0380
Carg08143ClCG05G010280Watermelon (Charleston Gray)carwcgB0370
Carg08143CSPI03G18150Wild cucumber (PI 183967)carcpiB0405
Carg08143Cucsa.244640Cucumber (Gy14) v1carcgyB0436
Carg08143CmaCh04G004720Cucurbita maxima (Rimu)carcmaB0529
Carg08143CmoCh04G005060Cucurbita moschata (Rifu)carcmoB0514
Carg08143Lsi05G002370Bottle gourd (USVL1VR-Ls)carlsiB346
Carg08143Cp4.1LG01g02410Cucurbita pepo (Zucchini)carcpeB0527
Carg08143CsGy3G018040Cucumber (Gy14) v2carcgybB0380
Carg08143MELO3C019546.2Melon (DHL92) v3.6.1carmedB0384
Carg08143CsaV3_3G018210Cucumber (Chinese Long) v3carcucB0403
Carg08143Cla97C05G092660Watermelon (97103) v2carwmbB0396
Carg08143Bhi01G001281Wax gourdcarwgoB0459
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg08143Silver-seed gourdcarcarB217
Carg08143Silver-seed gourdcarcarB324
Carg08143Silver-seed gourdcarcarB401
Carg08143Silver-seed gourdcarcarB402
Carg08143Cucumber (Gy14) v2carcgybB0388
Carg08143Cucumber (Gy14) v2carcgybB0389
Carg08143Cucumber (Gy14) v1carcgyB0433
Carg08143Cucumber (Gy14) v1carcgyB0434
Carg08143Cucurbita maxima (Rimu)carcmaB0528
Carg08143Cucurbita maxima (Rimu)carcmaB0525
Carg08143Cucurbita maxima (Rimu)carcmaB0526
Carg08143Cucurbita moschata (Rifu)carcmoB0508
Carg08143Cucurbita moschata (Rifu)carcmoB0509
Carg08143Cucurbita moschata (Rifu)carcmoB0512
Carg08143Cucurbita moschata (Rifu)carcmoB0516
Carg08143Cucurbita pepo (Zucchini)carcpeB0523
Carg08143Cucurbita pepo (Zucchini)carcpeB0529
Carg08143Wild cucumber (PI 183967)carcpiB0413
Carg08143Cucumber (Chinese Long) v2carcuB0409
Carg08143Cucumber (Chinese Long) v2carcuB0410
Carg08143Cucumber (Chinese Long) v3carcucB0412
Carg08143Bottle gourd (USVL1VR-Ls)carlsiB340
Carg08143Bottle gourd (USVL1VR-Ls)carlsiB342
Carg08143Melon (DHL92) v3.5.1carmeB0377
Carg08143Melon (DHL92) v3.5.1carmeB0386
Carg08143Melon (DHL92) v3.6.1carmedB0382
Carg08143Melon (DHL92) v3.6.1carmedB0390
Carg08143Watermelon (Charleston Gray)carwcgB0368
Carg08143Watermelon (97103) v1carwmB0375
Carg08143Watermelon (97103) v2carwmbB0394
Carg08143Watermelon (97103) v2carwmbB0399
Carg08143Watermelon (97103) v2carwmbB0401
Carg08143Wax gourdcarwgoB0462
Carg08143Wax gourdcarwgoB0463
Carg08143Wax gourdcarwgoB0464
Carg08143Wax gourdcarwgoB0466