Carg07488 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07488
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosome biogenesis ERB1
Location	Cucurbita_argyrosperma_scaffold_019 : 1088360 .. 1094304 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGCCATCTACTCTATTTCGAGCTCCAAGATATGGGTTTTTGCGGTGAAGATGGTGGCCGGCGGTGATGGTAGGGATGATGTGATGGATTTGAAATTGATGAGGTGTGCTGTGATTGACTGCTGCAAACCCATTTGGTCGATTAGCATTTCTTTTGGGTATTTGCTTTTGGGGGAAGATAATGGAGTTAGGGTTCTTAATTTGAGGCCTTTTGTGAGAGGGCGTGGGCGAAAAGTTAGAAATCTGTATGCCAAACGTGAAGTTCATAAGACATTTTTGCCTCACGGAGAAGTTTATGGAACTTCTGGTGGTACAGACTTGAATGGTGGTTCCCTTTTTGTTGGCAACAATGGACTCAACGAACATGCCAGTAGAAGTGATGGTGCTCAAAGTTCAGCGATTTGCAATGGATCTTTGGATGGGAAGATGGACAAACATTTTGATTCTGGTGAGTTAAGAAATCTATATGACTTATTAGCCATATTGGTCGTGTATCCTAGAATTTGGCTAATACTTTGTTGATCTTTTATTCGTTCTGAAAGTTCAATCACAAGTTTAATCCCGGGAGCATTTGCTATGCGTAAGAGTAATTCAAACATTAGGCGAATCCGTGATTATCGTATGTTAACAATGATTTCTTTGTAGGAATTTATCCTTGAACTTAAATTGTGGTAGGAGTTTATTGAGTCTGTGGTCACAGATTGAAAATAATTTATCAGCTTCCATTGGCTTGATACGTGCTGAAGTTTGAGACTGAGCGATAAAAGTTTGAGGAGTTTGGAACAATGCTTTATTCGAAGTGTATGCTTTTAGTAACTACAGGAGTGTCCAAGAAAGCTTGCTTCATTATAAATGAAGGAGACGGGAGAAATCTATCGAGTTGATATCGAGTTGCTGCATTGGTGTTGGGGAGGTTGAATTGAAACAATATCTAAATTCAAGATTTCTGCCAATTATAATGTGAAGCTCAATGATCCATGGGATATGAAATAAAGCCTTCCTTGTTGGGTATCGCAGATAGACGTATCGTTTTTTTTAGCTGATTCATTTTGGATGGATACACGCAACATTTCTTTAACTGTGGCCAGCTACCTGATTTGCACTCGAATACTTTTCATGACAACAACATATGTTTGATCTATTATATTAGCCAACGACTTGTTTTTAGGTTTTCCTTATATGGCCCGGACATGGGTGCTGAAGGTGCCGTCCTTTGGTTTATTTCATAAGGATGCCTCTAGATGGTAAATTACTGATTGTTGAAGAGGTTTAACTTGGATAGTTCATTCATATCCAAAAAAAACTTGGACGGTTCACCTATTTTCCACTTGAAACGAAATCCTTAGCTGGAGTGACGATTTTGTTTTTCACATTGTCTGTTATATTATTATTATTGCTATAATTTCTGGATCTCGTTCATGCCAAAACATTGTAGTTGTCAAGTTGTTGGCATATGCCTCTGATTGTGTATTTTTAATTGCAGTTAGATCAAGATCTGTAAAACTGAGACAAGATTCGAGTGAAGGAGGACTGTATTTTGTGGCACTGAAGGGCAGAGGAAATGAAGATCTGAGATCTGCAAAAATGATGCCATTAAAGGCATTATCAATTCAAGCACTTTCTCCCAGGAAAATCTTAATCCTGGACTCTGTTGGTGATTTACATCTGTTGCACCTTGCTAGCAGTGCTAATGGATCAGATTTTTCGTACAACATTCGACCATTGCCTCATCTAATGAAAGTTCAAACGCTGACCAGCGTTCCCGATACATCCATAAGTATGCTTGTCCGAATTCTTTGTTCTATACGTTTCTTCTCCTTGCTACCTTTTCAAAGGATTCTCCTTGTTTTTAGTCATTCTATTAGGTGCTTGAAAGAGAGAAAAAATATACTGGAAGGTTGGCCGAAGTAGTTTGTACAAGTGTGAGCCTTGGAGGAACCCCAAGATGCCCAATTTGATTGGGCCACGATGTTGCATTCTCTGTAGGCAGGTGTCAAAGGACGTCCGATCATATCCTATGGAGCTGTAATTTACCCGATGCTGTTTAGAGCAAACAACGAGTTCGGCTTGAGTTTGAATAGACATAGGGGTTTCAAAGAGATGATTGAGAAGTTTAGTCTCTACCCTCCATTCCCGAGAAAGAAAGGTTTTCGTGGCAGGCTACGGAGTGTGTTGTTTTATGGGGCCTGCGAAGGGAAAAGAATAATAGAGTCTGTTGAGGGCTTGAGAGGTGTTAAAGTGATGTTTGGCTTGTTGCTATTTCACAACTCTCAGAACTAATAGAAATACAATACTTTTGCAGGGAATCAAACTGTCTGGCTATCTGACAAGCAACATTCAGTTCATATGATGATGATACCTGATGTTGATTCTGATGTCACTGAAAATAGGGGAAATGAGAGCGAGGAAGTCCCGATGAAAAAAATATCAGGTCTCTATCGATGCAGATGTTTCGGGTTATAACTTATTGGTCTGAATAGTATTTGTATTATCAAGAACTAGGAATTGCGTATATGCTCAACTTAGTCCCAACTTTGGGTTGTTTTTATTGCCAGATATGCAAGTTATATTTGCTGGTGAAAAGATTCAAGATATAACATCCTTGAGCGCGAATGCTGTTTTAATTCTTGGACAAGGTAATTTCTTGTTATTCGTATCGAAATTCCTGCAAACACTTTGTTGTTGTATGCCAAAAAAATTGATTTAAGCTGCATGCTATCATTGCTTGTGTTTTAAAGATTATGTTGCAAATGGAACTACCCTGCCTGCTATTTTGAGTGCCTGTAGTGTTTGATTGGCTGCCAAACACCATTTTATTTTTGAAAGTACTTTCTGGATATTCGAAAAAGGATCCCAAATGCACTACTAATTTGGATTTGGTCTAATCAATATAGAGACTTTTATCCAGTTTAACCACGGGTTGTAGGTGCAAAACGTGAGGCTCGGGGACATGAAAAACTTTGTGCGCATCCTAGTTACTTCATATATGTTTTTAGGGTCAACTGGTAGTTCCCTTTTGCCATTTCTAATCCAATGATCAATCAAAGGTTGGAGAGCTTTCTTTCAGGGCTACTATTATATTTCTCTATTTGTAACTCCAGCCACCTCACCGTAAATAGGGCCGCTGGTTGTAATCAAATGGTGATGATTTCTAATGAAATTTAATGGTTGAGAAACTAAGTAGCATCTTGGGTAGAGCTATGACTTTCTCCTCATGTAACAGCCTAAGTCTACCGTTAACAAATATTGTCTGCTTTGGCTTATTGCGTATCACTGTCAACCTCACGGTTTTAAAACGTGTATGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCACAATCTACCCTCCTTCAGGGCCTATCGTCCTAGCTGACACTTGTTCCCTTCTCCAATCGATGTGATACCCCCCAATTCCACCCCCCTTTAAGGCCTAGTGTCCTTGCTGGCACACCGCATCATGTCCACCCCTTTTGGGGCTCAGCCTCCTCGCTGGCACATCGCCCGGTGTGACCCTGATGCCAATAGCCAAGCCCACCGCTAACAAATATTGTCCGCTTTGGCCCATTATGTATCGCCGTCTGTGGGATCTCACAATCCACCCTCCTTTGGAGCCCAGTGTCCTCATTGGCACTCGTTCCCTTCTCCAATCGATGTGAGACCCCCCATCCACCCCCCTTCGGGGCCCATCGTCCTTGCATGTCCACCCCATTCAGGGCTCAGCCTCCTCGTTGGCACATCGCTCGGTGTGGCTCTGATACCATTTGTAATGACTCCAACCCACCCTAACAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGGTTCCCCTTAAGGTTTTTAAAACACGTCTACTAGGGAGAGGCTTCCACACCCTTATAAAGATTGCTTCGTTCTCCTCCCCAACCGATGTGAGATCTCACCCCTCAAATAAAAGTGGTCAAAGTTACTTCTACTGTTGGAGGTTTCAAGTGATAATTAGACCTTCAGCTGTGCATCCTCATTCTATGGAGACGGTTAGGGAAATCAAGGTGTGTTCTAAGGTTAGGACGAGAAGATTATTACTATAAACAATTAGGAAAATATAGAGGGATTAGGCGAAAGGATAGGTGCTACTTTGGCCAGCTATAAAAACGAAAAGGAAAGAAGATCTTTGTGCTAACGCTTGCTTCGTCGGTTTTTTTTACCTTGTATATTCTTCATTTTCTATCAACTTATTTACAAAAATGACCATGTGAATTGCCACCAATGAAAATTTCCCTTTAATTGAATCATACGCATGTTAGCTTGTAAAACTCGAATAATATCCTGTAATTCTTATATACAAATAAAGAAAAGAAAAGAAATGAAAAAAGGAAAAGTACTGCGGCCAAGAAACATTATATACTTTTCAAACTTTGTTCTTTGTTCTTTATCATGCCATTTTCTTCCGTTGTTAACAGTGCTCATTTCTGTTAAGCAGGCAGCTTATATGCGTATACAATTTCCTGAAGTTTCCTCGGTGCCATTTTTAAGGGTAAGCAGCTTCTTATCTTGTCGCACGTTTCCTCATGCTTGTGCTTGAATGTTCGTTTTTCGTTCTTGGTTATTTGTAGGACATTTTTCATTCAAGGCTGTGTTAGATGATCTCGTCCAGAGTGGTGGCTTCTTGGCTTCATGTTGTGCTCAAGTAAGAAACTGACCTATTCTACAAGTTAGTTCATGGTGGCTTCTTGGTTCCTAATTATTGTGTTACTGTACTGCAGTTTTCTCACATGTCCATGGTGAATAAGATTCAAGAAGACCGCTCTGAATAGGTATGTTTTTATTGTCATTCAACTTTTTATTATTGAGAAACTGGTTGGAGAGGGGAACGAAGCACCCTATAAAGGGTGTGGAAACCTCTCCCTAATAGACGCGTTTTAAAACTGTGAGACTGACGGCGATATGTAACGGGCCAAAGTGGACAATATCTGTTAGCGGTGGTTTACTCGTAAAGCTTTTAGGGTCTTTATCTGTTTTATTTTCGTATATATATATTGCTTTGGTCTTTTTGATGCCATTGGTGGTTTATAACCTGTTTTGAACATCCGTCTATCGTAATGAAGTTCTCGTCTCGCTCAGTTTTCTTTGAAAGGACTGAATCTATTCTGCTTCGAGAGACAATTTCAGTTAATTAATCTAATTTTTGCTTCTATATTATTATTTGTCTGATTGAGATCTGTGGTCTATGGCACAGGACAATGCTTGGGAATATTCTTTTATGAAGTTCTGAAATTCTGAATATGGAAGTCTTTCAACCCAATAGGGAATAATGCACATGTGATGGAAGTCTTTCAACAGAATAGAGCCACCCCCTCTGCTTAGCCTTGGCCTTGCATCCATGAGCTGCAAGACAAGTTTGGGGCCAAGAAACGAGCATGCTAGCCATTGGTACGTCTGTTTCGTTGCATCTTGGTTCAACTCGCAGACAGAATATCGTATATTTATTCAATCCGCTATCATGAAAGATACAACACAACAGAGACCTTGAGCTGGATTTAGTGTTGCAAGATGAATATCATAATTGCATGAAACCTTCATAACTCGCAACATTCTAGTTTGAATCTATATATGCATCTACGACTCGTTCTCTTTCGGGAATGTAGCTGTTCTTTTCTTTTCATCAGATGGAAACACATTTTCTCTCAGAGATGACTGTTTTGAGAACTTTTTACTGTGTTTAGACTGCTAAATCTGCATTTGTTTTGTTCATCATTCAAATTTTTGTTACAGTTCTATGAGCTCCTCAGCCAAATGAAGTGAAAGTTGTTTGTGTGAAGGGCAATGGAAGGCCATAGCCCCAGAACAGAGCCTCTGTTTTTCATGGGATTGCATTTAGATGAGACAGAATTGATGGGTATGATGAGTCCCCAACAGTTGGGACCCTCCCACGCCCATAATTGAAACCCTTCACTGTCATTACA

mRNA sequence

TTCGCCATCTACTCTATTTCGAGCTCCAAGATATGGGTTTTTGCGGTGAAGATGGTGGCCGGCGGTGATGGTAGGGATGATGTGATGGATTTGAAATTGATGAGGTGTGCTGTGATTGACTGCTGCAAACCCATTTGGTCGATTAGCATTTCTTTTGGGTATTTGCTTTTGGGGGAAGATAATGGAGTTAGGGTTCTTAATTTGAGGCCTTTTGTGAGAGGGCGTGGGCGAAAAGTTAGAAATCTGTATGCCAAACGTGAAGTTCATAAGACATTTTTGCCTCACGGAGAAGTTTATGGAACTTCTGGTGGTACAGACTTGAATGGTGGTTCCCTTTTTGTTGGCAACAATGGACTCAACGAACATGCCAGTAGAAGTGATGGTGCTCAAAGTTCAGCGATTTGCAATGGATCTTTGGATGGGAAGATGGACAAACATTTTGATTCTGGTGAGTTAAGAAATCTATATGACTTATTAGCCATATTGGTCGTGTATCCTAGAATTTGGCTAATACTTTGTTGATCTTTTATTCGTTCTGAAAGTTCAATCACAAGTTTAATCCCGGGAGCATTTGCTATGCGTAAGAGTAATTCAAACATTAGGCGAATCCGTGATTATCGTATGTTAACAATGATTTCTTTGTAGGAATTTATCCTTGAACTTAAATTGTGGTAGGAGTTTATTGAGTCTGTGGTCACAGATTGAAAATAATTTATCAGCTTCCATTGGCTTGATACGTGCTGAAGTTTGAGACTGAGCGATAAAAGTTTGAGTGAAGGAGGACTGTATTTTGTGGCACTGAAGGGCAGAGGAAATGAAGATCTGAGATCTGCAAAAATGATGCCATTAAAGGCATTATCAATTCAAGCACTTTCTCCCAGGAAAATCTTAATCCTGGACTCTGTTGGTGATTTACATCTGTTGCACCTTGCTAGCAGTGCTAATGGATCAGATTTTTCGTACAACATTCGACCATTGCCTCATCTAATGAAAGTTCAAACGCTGACCAGCGTTCCCGATACATCCATAAGTATGCTTGTCCGAATTCTTTGTTCTATACGTTTCTTCTCCTTGCTACCTTTTCAAAGGATTCTCCTTGTTTTTAGTCATTCTATTAGGTGCTTGAAAGAGAGAAAAAATATACTGGAAGGTTGGCCGAAGTAGTTTGTACAAGTGTGAGCCTTGGAGGAACCCCAAGATGCCCAATTTGATTGGGCCACGATGTTGCATTCTCTGTAGGCAGGTGTCAAAGGACGTCCGATCATATCCTATGGAGCTGTAATTTACCCGATGCTGTTTAGAGCAAACAACGAGTTCGGCTTGAGTTTGAATAGACATAGGGGTTTCAAAGAGATGATTGAGAAGTTTAGTCTCTACCCTCCATTCCCGAGAAAGAAAGGTTTTCGTGGCAGGCTACGGAGTGTGTTGTTTTATGGGGCCTGCGAAGGGAAAAGAATAATAGAGTCTGTTGAGGGCTTGAGAGGGAATCAAACTGTCTGGCTATCTGACAAGCAACATTCAGTTCATATGATGATGATACCTGATGTTGATTCTGATGTCACTGAAAATAGGGGAAATGAGAGCGAGGAAGTCCCGATGAAAAAAATATCAGATATGCAAGTTATATTTGCTGGTGAAAAGATTCAAGATATAACATCCTTGAGCGCGAATGCTGTTTTAATTCTTGGACAAGGCAGCTTATATGCGTATACAATTTCCTGAAGTTTCCTCGGTGCCATTTTTAAGGGACATTTTTCATTCAAGGCTGTGTTAGATGATCTCGTCCAGAGTGGTGGCTTCTTGGCTTCATGTTGTGCTCAATTTTCTCACATGTCCATGGTGAATAAGATTCAAGAAGACCGCTCTGAATAGGACAATGCTTGGGAATATTCTTTTATGAAGTTCTGAAATTCTGAATATGGAAGTCTTTCAACCCAATAGGGAATAATGCACATGTGATGGAAGTCTTTCAACAGAATAGAGCCACCCCCTCTGCTTAGCCTTGGCCTTGCATCCATGAGCTGCAAGACAAGTTTGGGGCCAAGAAACGAGCATGCTAGCCATTGGTACGTCTGTTTCGTTGCATCTTGGTTCAACTCGCAGACAGAATATCGTATATTTATTCAATCCGCTATCATGAAAGATACAACACAACAGAGACCTTGAGCTGGATTTAGTGTTGCAAGATGAATATCATAATTGCATGAAACCTTCATAACTCGCAACATTCTAGTTTGAATCTATATATGCATCTACGACTCGTTCTCTTTCGGGAATGTAGCTGTTCTTTTCTTTTCATCAGATGGAAACACATTTTCTCTCAGAGATGACTGTTTTGAGAACTTTTTACTGTGTTTAGACTGCTAAATCTGCATTTGTTTTGTTCATCATTCAAATTTTTGTTACAGTTCTATGAGCTCCTCAGCCAAATGAAGTGAAAGTTGTTTGTGTGAAGGGCAATGGAAGGCCATAGCCCCAGAACAGAGCCTCTGTTTTTCATGGGATTGCATTTAGATGAGACAGAATTGATGGGTATGATGAGTCCCCAACAGTTGGGACCCTCCCACGCCCATAATTGAAACCCTTCACTGTCATTACA

Coding sequence (CDS)

ATGGTGGCCGGCGGTGATGGTAGGGATGATGTGATGGATTTGAAATTGATGAGGTGTGCTGTGATTGACTGCTGCAAACCCATTTGGTCGATTAGCATTTCTTTTGGGTATTTGCTTTTGGGGGAAGATAATGGAGTTAGGGTTCTTAATTTGAGGCCTTTTGTGAGAGGGCGTGGGCGAAAAGTTAGAAATCTGTATGCCAAACGTGAAGTTCATAAGACATTTTTGCCTCACGGAGAAGTTTATGGAACTTCTGGTGGTACAGACTTGAATGGTGGTTCCCTTTTTGTTGGCAACAATGGACTCAACGAACATGCCAGTAGAAGTGATGGTGCTCAAAGTTCAGCGATTTGCAATGGATCTTTGGATGGGAAGATGGACAAACATTTTGATTCTGGTGAGTTAAGAAATCTATATGACTTATTAGCCATATTGGTCGTGTATCCTAGAATTTGGCTAATACTTTGTTGA

Protein sequence

MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGRKVRNLYAKREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNGSLDGKMDKHFDSGELRNLYDLLAILVVYPRIWLILC

Homology

[Close]

BLAST of Carg07488 vs. NCBI nr
Match: XP_022949067.1 (uncharacterized protein LOC111452530 isoform X2 [Cucurbita moschata])

HSP 1 Score: 273.9 bits (699), Expect = 3.5e-70
Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 60
           MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR
Sbjct: 169 MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 228

Query: 61  KVRNLYAKREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG 120
           KVRNLYAKREVHK+FLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG
Sbjct: 229 KVRNLYAKREVHKSFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG 288

Query: 121 SLDGKMDKHFDSGELRNL 139
           SLDGKMDKHFDS   R++
Sbjct: 289 SLDGKMDKHFDSVRSRSV 306

[Close]

BLAST of Carg07488 vs. NCBI nr
Match: XP_022949066.1 (uncharacterized protein LOC111452530 isoform X1 [Cucurbita moschata])

HSP 1 Score: 273.9 bits (699), Expect = 3.5e-70
Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 60
           MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR
Sbjct: 169 MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 228

Query: 61  KVRNLYAKREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG 120
           KVRNLYAKREVHK+FLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG
Sbjct: 229 KVRNLYAKREVHKSFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG 288

Query: 121 SLDGKMDKHFDSGELRNL 139
           SLDGKMDKHFDS   R++
Sbjct: 289 SLDGKMDKHFDSVRSRSV 306

[Close]

BLAST of Carg07488 vs. NCBI nr
Match: XP_023521554.1 (uncharacterized protein LOC111785374 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 8.0e-67
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 60
           MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR
Sbjct: 169 MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 228

Query: 61  KVRNLYAKREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG 120
           KVRNL AKREV K+FLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHAS+SD AQSSAICNG
Sbjct: 229 KVRNLNAKREVQKSFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASKSDDAQSSAICNG 288

Query: 121 SLDGKMDKHFDSGELRNL 139
           SLDGK+DKHFDS   R++
Sbjct: 289 SLDGKLDKHFDSVRARSV 306

[Close]

BLAST of Carg07488 vs. NCBI nr
Match: XP_023525140.1 (uncharacterized protein LOC111788836 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023525141.1 uncharacterized protein LOC111788836 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 8.0e-67
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 60
           MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR
Sbjct: 169 MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 228

Query: 61  KVRNLYAKREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG 120
           KVRNL AKREV K+FLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHAS+SD AQSSAICNG
Sbjct: 229 KVRNLNAKREVQKSFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASKSDDAQSSAICNG 288

Query: 121 SLDGKMDKHFDSGELRNL 139
           SLDGK+DKHFDS   R++
Sbjct: 289 SLDGKLDKHFDSVRARSV 306

[Close]

BLAST of Carg07488 vs. NCBI nr
Match: XP_023525136.1 (uncharacterized protein LOC111788836 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525137.1 uncharacterized protein LOC111788836 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 8.0e-67
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 60
           MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR
Sbjct: 169 MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 228

Query: 61  KVRNLYAKREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG 120
           KVRNL AKREV K+FLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHAS+SD AQSSAICNG
Sbjct: 229 KVRNLNAKREVQKSFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASKSDDAQSSAICNG 288

Query: 121 SLDGKMDKHFDSGELRNL 139
           SLDGK+DKHFDS   R++
Sbjct: 289 SLDGKLDKHFDSVRARSV 306

[Close]

BLAST of Carg07488 vs. TrEMBL
Match: tr|A0A1S3CES6|A0A1S3CES6_CUCME (uncharacterized protein LOC103500140 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500140 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-45
Identity = 100/134 (74.63%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 5   GDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGRKVRN 64
           GDG DD+  LKLMRCAVIDCCKPIWSI+ISFG+LLLGEDNG+RV+NLRPFVRGRGRKVRN
Sbjct: 171 GDGDDDI-GLKLMRCAVIDCCKPIWSINISFGFLLLGEDNGIRVVNLRPFVRGRGRKVRN 230

Query: 65  LYA------KREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAIC 124
           L A      KREV K+FLPHG+V GTSGGTDLNGGSL V +NG N  ASRS+ A SSA C
Sbjct: 231 LNANTSSNGKREVQKSFLPHGDVCGTSGGTDLNGGSLVVSSNGFNLQASRSEDAGSSA-C 290

Query: 125 NGSLDGKMDKHFDS 133
           NG LDGK DK+  S
Sbjct: 291 NGCLDGKFDKNSSS 302

[Close]

BLAST of Carg07488 vs. TrEMBL
Match: tr|A0A1S3CF16|A0A1S3CF16_CUCME (uncharacterized protein LOC103500140 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500140 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-45
Identity = 100/134 (74.63%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 5   GDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGRKVRN 64
           GDG DD+  LKLMRCAVIDCCKPIWSI+ISFG+LLLGEDNG+RV+NLRPFVRGRGRKVRN
Sbjct: 171 GDGDDDI-GLKLMRCAVIDCCKPIWSINISFGFLLLGEDNGIRVVNLRPFVRGRGRKVRN 230

Query: 65  LYA------KREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAIC 124
           L A      KREV K+FLPHG+V GTSGGTDLNGGSL V +NG N  ASRS+ A SSA C
Sbjct: 231 LNANTSSNGKREVQKSFLPHGDVCGTSGGTDLNGGSLVVSSNGFNLQASRSEDAGSSA-C 290

Query: 125 NGSLDGKMDKHFDS 133
           NG LDGK DK+  S
Sbjct: 291 NGCLDGKFDKNSSS 302

[Close]

BLAST of Carg07488 vs. TrEMBL
Match: tr|A0A1S3CGA6|A0A1S3CGA6_CUCME (uncharacterized protein LOC103500140 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500140 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.0e-45
Identity = 100/134 (74.63%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 5   GDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGRKVRN 64
           GDG DD+  LKLMRCAVIDCCKPIWSI+ISFG+LLLGEDNG+RV+NLRPFVRGRGRKVRN
Sbjct: 171 GDGDDDI-GLKLMRCAVIDCCKPIWSINISFGFLLLGEDNGIRVVNLRPFVRGRGRKVRN 230

Query: 65  LYA------KREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAIC 124
           L A      KREV K+FLPHG+V GTSGGTDLNGGSL V +NG N  ASRS+ A SSA C
Sbjct: 231 LNANTSSNGKREVQKSFLPHGDVCGTSGGTDLNGGSLVVSSNGFNLQASRSEDAGSSA-C 290

Query: 125 NGSLDGKMDKHFDS 133
           NG LDGK DK+  S
Sbjct: 291 NGCLDGKFDKNSSS 302

[Close]

BLAST of Carg07488 vs. TrEMBL
Match: tr|V4UWE2|V4UWE2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10011716mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.4e-19
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 5   GDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGRKVRN 64
           GDG DD + +KLMRCAVI+CCKP+WS+S+SFG+++LGEDNGVRVLNLR  V+G+ +K++N
Sbjct: 177 GDG-DDGVRVKLMRCAVIECCKPVWSLSLSFGFMILGEDNGVRVLNLRSLVKGKVKKIKN 236

Query: 65  LYAKREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNGSLDG 124
                    + LP+G                 +G+ G        DG      CNG LD 
Sbjct: 237 ---------SSLPNG----------------IIGDYGF-------DGPTERIACNGYLDE 277

Query: 125 KMDKHFDSGELRNL 139
           K+DKH  S + R++
Sbjct: 297 KIDKHSVSVKQRSV 277

[Close]

BLAST of Carg07488 vs. TrEMBL
Match: tr|A0A2H5NUZ3|A0A2H5NUZ3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_078440 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.0e-19
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 0


Query: 1   MVAGGDGRDDVMDLKLMRCAVIDCCKPIWSISISFGYLLLGEDNGVRVLNLRPFVRGRGR 60
           M+  GDG DD + + LMRCAVI+CCKP+WS+S+SFG+++LGEDNGVRVLNLR  V+G+ +
Sbjct: 173 MLMDGDG-DDGVRVNLMRCAVIECCKPVWSLSLSFGFMILGEDNGVRVLNLRSLVKGKVK 232

Query: 61  KVRNLYAKREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNG 120
           K++N         + LP+G                 +G+ G        DG      CNG
Sbjct: 233 KIKN---------SSLPNG----------------IIGDYGF-------DGPTERIACNG 277

Query: 121 SLDGKMDKHFDSGELRNL 139
            LD K+DKH  S + R++
Sbjct: 293 YLDEKIDKHSVSVKQRSV 277

The following BLAST results are available for this feature:

BLAST of Carg07488 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949067.1	3.5e-70	95.65	uncharacterized protein LOC111452530 isoform X2 [Cucurbita moschata]	[more]
XP_022949066.1	3.5e-70	95.65	uncharacterized protein LOC111452530 isoform X1 [Cucurbita moschata]	[more]
XP_023521554.1	8.0e-67	92.03	uncharacterized protein LOC111785374 [Cucurbita pepo subsp. pepo]	[more]
XP_023525140.1	8.0e-67	92.03	uncharacterized protein LOC111788836 isoform X3 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_023525136.1	8.0e-67	92.03	uncharacterized protein LOC111788836 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Carg07488 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg07488 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07488 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CES6\|A0A1S3CES6_CUCME	2.0e-45	74.63	uncharacterized protein LOC103500140 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CF16\|A0A1S3CF16_CUCME	2.0e-45	74.63	uncharacterized protein LOC103500140 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CGA6\|A0A1S3CGA6_CUCME	2.0e-45	74.63	uncharacterized protein LOC103500140 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|V4UWE2\|V4UWE2_9ROSI	5.4e-19	43.28	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10011716mg PE=4 ...	[more]
tr\|A0A2H5NUZ3\|A0A2H5NUZ3_CITUN	7.0e-19	42.03	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_078440 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07488-RA	Carg07488-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37383	FAMILY NOT NAMED	coord: 8..131

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07488	Cla007115	Watermelon (97103) v1	carwmB0761
Carg07488	MELO3C023764	Melon (DHL92) v3.5.1	carmeB0757
Carg07488	ClCG05G012060	Watermelon (Charleston Gray)	carwcgB0739
Carg07488	CSPI03G20420	Wild cucumber (PI 183967)	carcpiB0798
Carg07488	Cucsa.031630	Cucumber (Gy14) v1	carcgyB0854
Carg07488	CmaCh01G003950	Cucurbita maxima (Rimu)	carcmaB1059
Carg07488	CmoCh01G004190	Cucurbita moschata (Rifu)	carcmoB1033
Carg07488	Lsi05G004020	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07488	Cp4.1LG03g06330	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07488	Cp4.1LG02g17150	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07488	CsGy3G020140	Cucumber (Gy14) v2	carcgybB0757
Carg07488	MELO3C023764.2	Melon (DHL92) v3.6.1	carmedB0772
Carg07488	CsaV3_3G020350	Cucumber (Chinese Long) v3	carcucB0801
Carg07488	Cla97C05G093960	Watermelon (97103) v2	carwmbB0795
Carg07488	Bhi01G001440	Wax gourd	carwgoB0896

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07488	Silver-seed gourd	carcarB471
Carg07488	Cucurbita maxima (Rimu)	carcmaB1057
Carg07488	Cucurbita moschata (Rifu)	carcmoB1031
Carg07488	Cucumber (Chinese Long) v2	carcuB0780