Cp4.1LG03g06330 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g06330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 4169895 .. 4173242 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTGAGCGACGGCGATGACGGGATAGGTTTGAAATTGATGAAATGTGCTGTGATTGAATGCTGCAAACCTATTTGGTCAATTAGCATTTCGTTTGGGGTTTTGATCTTGGGGGAGGATAATGGTATTAAGGTTGTTAATTTGAGGCGTTTTGTGAGAGGGCGTGGTCGAAGCATGAAGTTCATAAGCCATTTTTGCCTCATGGAGAAGCTTGTGGAGCTTCTGGAGGCACTGACTTGAATGGTGGCTCTCTCGTTGTTGGCAACAATGGATGCTTGGACGGAAACTTGGACAAACATTCGATTTCTGGTAAGCTAAGGGAGTTTTGTAACTTTTGTTTATTTGATATCTTCATAGTTTTTAAAGTAAGAATGATACAAAAACGTGTATTCTATGCATACATTTTAGTTATATTGGCTGTGTTTCCTGTTATTTGGAACTTTTGATCATGATTCTAATCCTAGTAGCCTTCTTTTAATTGCCTAAGATTGGTGTAAACGTAATGCGTTCGGTGTAACATCCTTGCACGCTGAATAATTTTGTTTTCGACCGAAGCAAGTGGACATTGGAGCTTTGAGTCCTTCAATCTCTTAGCCACTTGAAATGACTGTAACATTGATGGTTAATAGATTGCTGTCAATGAATCGAGTCCTACCTGACCTGTGTGATATCCCACATTGGTTGGGGAGGAGAACGAAACACCCTTTATAAGGGCGTGAAAACCTCTTTCTAGTAGACACATCTTAAAAATCTTGAGGGGAAGCCCAAAAGGAAAAGGCCAAAGAGGACAATATTTGCTAGCGGTGGGTTTTGGCCGTTACAAATGGTACCAGAGCCAGATACGGGGTGATGTGCCAGCGAGGAGGCTGTTCCCAAAAGGGGGTATAGACACGAGGCGGTGTGCCAGCAAGGACGCTGGGTCCCGAAGGGAGTGGATTTGGTGAGGGTCCCCACATCAATTGGAAAGGAACGAGTGCCTGCAAGGACGCTGGGCCCTGAAGGGGGGTGGATTGTGATATCCCACATCGGTGGGGGAGGAGAACGAAATACTTTTTATAAAAGTGTGGAAACTTCTTCCTAACAAACGCGTTTTAAAAACCTTGAGGGGAAGCCCAAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGATCGTTACATAGGGCTTGGATCATTACATACAGTGAAGTGAGTTTTTGTTGTGATCCCTTTAGTGTGTGCTTGGACTTTGATAGAATTTCTTACATTACAGTCGGAGTAGTTTTCTCCACGAGGACAACGTTCGTTACCATGGTGTTTACTTCCCTTGTTAACAATATTCATTTCTGTTAATCAGGAAGCTTATATGCGTATACAGTTTCCTGAAGTTTCATCGGCGTTGTTTTTCCGGTAAAATGCTTCTAGTCTACTTGCAAGGACACCCTGCCTCATGCACGCACTCGAATGTTCACTTTTATTCTTGGTTATTTGCAGGACATTTTCGTTCAAGGCTCCGTTAGATGATCTCGTCCAGAGTCGTGGCTTATCAGCTTCATGTTCTGCTTGAGTAAGAAACCGAGCTGTACTACAGGTTAATTATATGGACATATCTGTGATCAGATCCTTGCAATGTGGTCTCTAATTATTGCATTACAGTAAGTCGATACCAACGAAGTCGAGAACTGCAGTTTTCTCATACATCCATGGTGCATAAGATTTGAGAAGGCTCAGCTCTAAGTAGGTATGTTGTTTTTACTATTATCCTTTTTTCTATTGTTGAGAAATTGATGTTGCAGGTTTGAAATACGAAAAATGCTTCGAACATCCTTCCCGTCTTGCAGGTTTGAAATACAAATTGATCTTGGTGTGTTCCTTTGGGAATGGGTTTCCAAAGACACGGCAGAAATAGTTCAGGAATTACTAAATATGGGTCTATAGGGATGCATTCAATCCTCAAAAAAAGAGGATTTGATTGAGTACCGAGGAGTCAAAGACTTAATGTCAGACGACATGGATGTGCCAACATTGTGCCTCCACCTTTGAGGCGGAGGTTGATATATGGGGTCGCTCTCCGGTACGATATCTAAGAATGAGTCGCCAAGGACATGGGAGGATTCGTACCTCAATTGTACCCAGATGGATGGATGTTCGGGATGCTCGATTATAAAGTTGACTTATAGGCTGGTTCTCGATAAGTGTGCCCGAGCGAGCAGTGAAGGCTGATGACATCTTGGAACTTGGGTGAGCATCATGAAATGTGTGGGCTATGTTATTGAGAATCAAGATGACTAAGATGAAATGCGATGTTTCATTTGAAGGACGTTGACTTTGAGGAGGAGAAAGGTCGAGTCTTAGGACTTAGCCTAGAGTAGAGGCAAGTCAACTAGACTTGCAATGAAGTGAATGCGGCACGCATGGGCGACATGTATGCTTGAACAAAGCATAGTTTCCGCATGAGTTGTGTTTGGTCAATGAAGGAAAACCTCACCTAAGGTCTGACAAAACCGCAAAACTAAGCAAAAATTATAAGCGAGTCTGAGTTCCCCTTATTAAGACTCGTCACGATTGTGTCAGAATTATGACGCCGCACGGTTTGAAAAGTATGATCACGACACAAAACACGATCATATCATGTGGAGTTGAGTTTAATTGTGCAATCTAGTGCGAGTTCTTTGGTTTTTTACTTTTTCTGCTTTAATTCCATATTATCTTCGTTATTTTGCATCGATGGTACGTAACATGCTTCGAGCTGTCCATCGTTACGATCGTTCTCGCTACTCAGTTTTCTGTTCAAGAACGAATCTATTTAGCTTAGAGAAATTATCTGATATTGTTATTTGTCTTACTGAGATTTGTGGTATATGGCATAGGACCTTTGCTGTGCTTCCATGGCCTTGCTTGCATCCATGAGCTGCAAGACAAGCTCGGGGCTGAGAAACGAGCATGCTAGCTGTTGGTTCGAGTAGCAGAAAGAATACGGTATGCTTCCGACCTGCTATCATGAAAGATATACTCGTGCTTGGCCAATCTTCTCTATTCAATTTTGCGCGTAACTGATTTTGAACGATCTCATGATCGTTTTTAGTTTGATAGTGAAGTAGATGTTAATTTTATAGCATGTTTAACATCGAATAACTATCGTAGTTTGGTTTAGTGGCATCAAGTAAAGAGTGGTCGTTTACTTTCGATATCAAACTCCTATGAGTTACTTAACGAGTATCGTATGGTCTAATGATTCTTTCACTAAATTCACCTAACGAAGCAACAACTTTGTTTTTTAAGAGCTCATTCCTTAGTCACGTGTTGGTCTCAACATGTTGGGCCGAGAAAGTGTCCTATTTCCAACATCTCTTACC

mRNA sequence

ATGATGGCGTTTTGTGAGAGGGCGTGGTCGAAGCATGAAGTTCATAAGCCATTTTTGCCTCATGGAGAAGCTTGTGGAGCTTCTGGAGGCACTGACTTGAATGGTGGCTCTCTCGTTGTTGGCAACAATGGATGCTTGGACGGAAACTTGGACAAACATTCGATTTCTGCTTATATGCGTATACAGTTTCCTGAAGTTTCATCGGCGTTGTTTTTCCGGACATTTTCGTTCAAGGCTCCGTTAGATGATCTCGTCCAGAGTCGTGGCTTATCAGCTTCATGTTCTGCTTGATAAGTCGATACCAACGAAGTCGAGAACTGCAGTTTTCTCATACATCCATGGTGCATAAGATTTGAGAAGGCTCAGCTCTAAGTAGGACCTTTGCTGTGCTTCCATGGCCTTGCTTGCATCCATGAGCTGCAAGACAAGCTCGGGGCTGAGAAACGAGCATGCTAGCTGTTGGTTCGAGTAGCAGAAAGAATACGGTATGCTTCCGACCTGCTATCATGAAAGATATACTCGTGCTTGGCCAATCTTCTCTATTCAATTTTGCGCGTAACTGATTTTGAACGATCTCATGATCGTTTTTAGTTTGATAGTGAAGTAGATGTTAATTTTATAGCATGTTTAACATCGAATAACTATCGTAGTTTGGTTTAGTGGCATCAAGTAAAGAGTGGTCGTTTACTTTCGATATCAAACTCCTATGAGTTACTTAACGAGTATCGTATGGTCTAATGATTCTTTCACTAAATTCACCTAACGAAGCAACAACTTTGTTTTTTAAGAGCTCATTCCTTAGTCACGTGTTGGTCTCAACATGTTGGGCCGAGAAAGTGTCCTATTTCCAACATCTCTTACC

Coding sequence (CDS)

ATGATGGCGTTTTGTGAGAGGGCGTGGTCGAAGCATGAAGTTCATAAGCCATTTTTGCCTCATGGAGAAGCTTGTGGAGCTTCTGGAGGCACTGACTTGAATGGTGGCTCTCTCGTTGTTGGCAACAATGGATGCTTGGACGGAAACTTGGACAAACATTCGATTTCTGCTTATATGCGTATACAGTTTCCTGAAGTTTCATCGGCGTTGTTTTTCCGGACATTTTCGTTCAAGGCTCCGTTAGATGATCTCGTCCAGAGTCGTGGCTTATCAGCTTCATGTTCTGCTTGA

Protein sequence

MMAFCERAWSKHEVHKPFLPHGEACGASGGTDLNGGSLVVGNNGCLDGNLDKHSISAYMRIQFPEVSSALFFRTFSFKAPLDDLVQSRGLSASCSA
Homology
[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: gi|659123261|ref|XP_008461570.1| (PREDICTED: uncharacterized protein LOC103500140 isoform X2 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 1 

Query: 11  KHEVHKPFLPHGEACGASGGTDLNGGSLVVGN------------------NGCLDGNLDK 70
           K EV K FLPHG+ CG SGGTDLNGGSLVV +                  NGCLDG  DK
Sbjct: 239 KREVQKSFLPHGDVCGTSGGTDLNGGSLVVSSNGFNLQASRSEDAGSSACNGCLDGKFDK 298

Query: 71  HSISAYMR-IQFPEVSS-ALFFRTFSFKAPLDDLVQSRGLS 92
           +S S   R I+  + SS  L+F     +A  +DL  ++ +S
Sbjct: 299 NSSSVRPRCIKLRQDSSEGLYFVALKRRAN-EDLKSAKMMS 338

[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: gi|659123263|ref|XP_008461571.1| (PREDICTED: uncharacterized protein LOC103500140 isoform X3 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 1 

Query: 11  KHEVHKPFLPHGEACGASGGTDLNGGSLVVGN------------------NGCLDGNLDK 70
           K EV K FLPHG+ CG SGGTDLNGGSLVV +                  NGCLDG  DK
Sbjct: 239 KREVQKSFLPHGDVCGTSGGTDLNGGSLVVSSNGFNLQASRSEDAGSSACNGCLDGKFDK 298

Query: 71  HSISAYMR-IQFPEVSS-ALFFRTFSFKAPLDDLVQSRGLS 92
           +S S   R I+  + SS  L+F     +A  +DL  ++ +S
Sbjct: 299 NSSSVRPRCIKLRQDSSEGLYFVALKRRAN-EDLKSAKMMS 338

[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: gi|659123265|ref|XP_008461572.1| (PREDICTED: uncharacterized protein LOC103500140 isoform X4 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 1 

Query: 11  KHEVHKPFLPHGEACGASGGTDLNGGSLVVGN------------------NGCLDGNLDK 70
           K EV K FLPHG+ CG SGGTDLNGGSLVV +                  NGCLDG  DK
Sbjct: 239 KREVQKSFLPHGDVCGTSGGTDLNGGSLVVSSNGFNLQASRSEDAGSSACNGCLDGKFDK 298

Query: 71  HSISAYMR-IQFPEVSS-ALFFRTFSFKAPLDDLVQSRGLS 92
           +S S   R I+  + SS  L+F     +A  +DL  ++ +S
Sbjct: 299 NSSSVRPRCIKLRQDSSEGLYFVALKRRAN-EDLKSAKMMS 338

[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: gi|659123257|ref|XP_008461569.1| (PREDICTED: uncharacterized protein LOC103500140 isoform X1 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-08
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 1 

Query: 11  KHEVHKPFLPHGEACGASGGTDLNGGSLVVGN------------------NGCLDGNLDK 70
           K EV K FLPHG+ CG SGGTDLNGGSLVV +                  NGCLDG  DK
Sbjct: 239 KREVQKSFLPHGDVCGTSGGTDLNGGSLVVSSNGFNLQASRSEDAGSSACNGCLDGKFDK 298

Query: 71  HSISAYMR-IQFPEVSS-ALFFRTFSFKAPLDDLVQSRGLS 92
           +S S   R I+  + SS  L+F     +A  +DL  ++ +S
Sbjct: 299 NSSSVRPRCIKLRQDSSEGLYFVALKRRAN-EDLKSAKMMS 338

[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: gi|778680625|ref|XP_011651361.1| (PREDICTED: uncharacterized protein LOC101211683 isoform X2 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-06
Identity = 34/69 (49.28%), Postives = 37/69 (53.62%), Query Frame = 1 

Query: 10  SKHEVHKPFLPHGEACGASGGTDLNGGSLVVGN------------------NGCLDGNLD 61
           +K EV K FLPH + CG SGG DLNGGSLVV +                  NGCLDG LD
Sbjct: 238 AKREVQKSFLPHVDVCGTSGGNDLNGGSLVVSSNGFNLQASRSEDAGSLSCNGCLDGKLD 297

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g06330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g06330 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g06330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123261|ref|XP_008461570.1|7.7e-0843.56PREDICTED: uncharacterized protein LOC103500140 isoform X2 [Cucumis melo][more]
gi|659123263|ref|XP_008461571.1|7.7e-0843.56PREDICTED: uncharacterized protein LOC103500140 isoform X3 [Cucumis melo][more]
gi|659123265|ref|XP_008461572.1|7.7e-0843.56PREDICTED: uncharacterized protein LOC103500140 isoform X4 [Cucumis melo][more]
gi|659123257|ref|XP_008461569.1|7.7e-0843.56PREDICTED: uncharacterized protein LOC103500140 isoform X1 [Cucumis melo][more]
gi|778680625|ref|XP_011651361.1|3.2e-0649.28PREDICTED: uncharacterized protein LOC101211683 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g06330.1Cp4.1LG03g06330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g06330CmoCh14G008120Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g06330CmoCh01G004190Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g06330Cla007115Watermelon (97103) v1cpewmB615
Cp4.1LG03g06330MELO3C023764Melon (DHL92) v3.5.1cpemeB586
Cp4.1LG03g06330ClCG05G012060Watermelon (Charleston Gray)cpewcgB560
Cp4.1LG03g06330Lsi05G004020Bottle gourd (USVL1VR-Ls)cpelsiB511
Cp4.1LG03g06330CsaV3_3G020350Cucumber (Chinese Long) v3cpecucB0749
Cp4.1LG03g06330Carg07488Silver-seed gourdcarcpeB1073
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g06330Wax gourdcpewgoB0773
Cp4.1LG03g06330Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG03g06330Cucumber (Gy14) v1cgycpeB0009
Cp4.1LG03g06330Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g06330Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g06330Wild cucumber (PI 183967)cpecpiB602
Cp4.1LG03g06330Cucumber (Chinese Long) v2cpecuB600
Cp4.1LG03g06330Cucumber (Gy14) v2cgybcpeB397
Cp4.1LG03g06330Melon (DHL92) v3.6.1cpemedB690
Cp4.1LG03g06330Melon (DHL92) v3.6.1cpemedB694
Cp4.1LG03g06330Silver-seed gourdcarcpeB0673