Carg06884 (gene) Silver-seed gourd

NameCarg06884
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionreactive oxygen species modulator 1
LocationCucurbita_argyrosperma_scaffold_065 : 140387 .. 142468 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTCAACTTTCAAAAAGAATCGTGTTGAAAAGATTGTTGAGATACAATTCGAAGCTTAATTGCTCGAGGAACAAATTTTCTCCGTCTCTTGTTCGAGGAGAATAATATTAAGGTCTCTGAGAATGGCGAGAGATAGCTGCTTGGCTCGAGTTACTGCGGGAGTTGCCGTTGGTGGTGCTGTAGGTGGAGCCGTCGGTAAGGAAACCCTAAATTTTCTTCATAGTTCTAATGCCTGTTGTCTTCTTATATATCATTGATATTCCCGTTTTTCTTTCGTCTCTCGACTTCCGAATTTCGGTTATGATTTGATCGTTGTTCCGCTTTCTCAGCGACTGATATTTGGTCAAGTGGTATAGGATTTGTTGGATTAAAGAGTTTGCATACGCAGGAAGCTAAATATTTGGTCAAGTTGCGCCCTTGCATCTGTGATTGAACCATGTTTATCAGTGTTAATGTACTACTAAGAAATATACCGCTGTGAAGCCTTGGATATATTTAATTCTTCCATCTTATCTTTCATATTAAAGCTACGTTTCCTTCGGATTTTATAAAATAAGGCTTTATTTGTTGGATAATATCACTTGCTGGTGGACATAGTTTTTATTGTGTAGAAAGAGTTCTTAGCTTTTTAGGGCCCATCGTAATGAATATTTTGATTGAACTGCTGTAGATTTAACCTGTCAAGTATGGAGTCAACTAATCTTATCTTTGGGGTCTGTTGTACTCCATTGGCCTATTTTGTGTATACCTCATAAAGTTCACCGGAACTTGTGTGCTGACTTCCTGAAGCTCAAAGTTTAACCTTATTTAACAAGTAGCAGTGTACTTTTTCAAGAAGCTCCTTATTTTGCTTTCTTCCATTTCAATAGAGTGTCGAGCATTATGAACTGGCCAGTGCCACAACTTTGAAGATATACATCAGTTACGAAATCTCTGTAACCAACAATTCGGGCTATCGTTTCTTGTTTTTTAATATTTAGATTGGACGGCCTTTCTTGTTTAGAGTATCTTACAATCAATGCTGCAATATATTTGTTTCATCAGAATTATGATATGCTTTGGCTAAGGATTCTAGAACTAACTTTTTTTTTTTAATTTTTTTTTTCTCTAGGTGCTGTTTATGGGACTTATGAGGCCATTAGGTTTAAGGTATACTATCTTCTCCGATCCAAATCTTCAAAAAATATGACTTGAAATTCGACCTCGTCTCTCTGCTGTTTTATGATTTTAGTAAGTTACTCATCAAATTATCGCAAATAGTTAATCCTTTTCCATCTGTTTTTGTTTACAATTAATTAACGTCTTATCTAAACATCTTGAAACTAATATGAGATTCCATCTCATCATCATTGGAAATTCTATGAACATGGGAGACTACCCAAAGTTATGTTTCATTAGCTTGGGATCAAAATTTGCAGTCAATCTACTTTAAATTTACTACACATTTAGCCCTTTTAAAAACAAATTTCATGATTTCTTCCATGATTGGTAATTCTTCCTGAGTTTCTATATTTCTTTCTGCAGACAAATGTCTATGCCTTGAACCATTTTGCTCATTTTCTTCATTCTTACTATTCAAGTTTCTGTCATTGAAACCCGAAGATTACAACGTCCTAGTTACCATTTACTTATTTCAACTCCAGGTGATGATAGATGGTAATTAACTGTGGACCAAACTTGCATTTGTTGGTGCAGGTGCCAGGGCTTCTGAAGATCAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGGCTTTTCTTGGGGGCAGGGAGTTTGATACATTGTGGAAAGTCATACTGAATCACAAGTTCCTGAATTTGGATGAGATAATATTGTTTGCTTTTAGTTTCCTTGCTTTTCAACATGAACTTATTGCGGACGGTCATTTGTTTAGTTAAAAGGTTCCGTTTGTTTTAGTTTAAGGAACAAAATGGTCAATTGATGATGCCTTCAGCCCTACTTGGATGTGAAGTTTTCAAGTTTTGTTTGCCCTCATGATTTGTCAATTTAATAAAATATTGTTGTCGCCCATCATTTTTTTAAATGAAAAAGTTTATAAGAGCTCTTTGAAT

mRNA sequence

AATTCAACTTTCAAAAAGAATCGTGTTGAAAAGATTGTTGAGATACAATTCGAAGCTTAATTGCTCGAGGAACAAATTTTCTCCGTCTCTTGTTCGAGGAGAATAATATTAAGGTCTCTGAGAATGGCGAGAGATAGCTGCTTGGCTCGAGTTACTGCGGGAGTTGCCGTTGGTGGTGCTGTAGGTGGAGCCGTCGGTGCTGTTTATGGGACTTATGAGGCCATTAGGTTTAAGGTGCCAGGGCTTCTGAAGATCAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGGCTTTTCTTGGGGGCAGGGAGTTTGATACATTGTGGAAAGTCATACTGAATCACAAGTTCCTGAATTTGGATGAGATAATATTGTTTGCTTTTAGTTTCCTTGCTTTTCAACATGAACTTATTGCGGACGGTCATTTGTTTAGTTAAAAGGTTCCGTTTGTTTTAGTTTAAGGAACAAAATGGTCAATTGATGATGCCTTCAGCCCTACTTGGATGTGAAGTTTTCAAGTTTTGTTTGCCCTCATGATTTGTCAATTTAATAAAATATTGTTGTCGCCCATCATTTTTTTAAATGAAAAAGTTTATAAGAGCTCTTTGAAT

Coding sequence (CDS)

ATGGCGAGAGATAGCTGCTTGGCTCGAGTTACTGCGGGAGTTGCCGTTGGTGGTGCTGTAGGTGGAGCCGTCGGTGCTGTTTATGGGACTTATGAGGCCATTAGGTTTAAGGTGCCAGGGCTTCTGAAGATCAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGGCTTTTCTTGGGGGCAGGGAGTTTGATACATTGTGGAAAGTCATACTGA

Protein sequence

MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
BLAST of Carg06884 vs. NCBI nr
Match: XP_008449669.1 (PREDICTED: reactive oxygen species modulator 1 [Cucumis melo] >XP_004140202.2 PREDICTED: reactive oxygen species modulator 1 [Cucumis sativus] >XP_022152962.1 reactive oxygen species modulator 1 [Momordica charantia] >XP_022943286.1 reactive oxygen species modulator 1 isoform X2 [Cucurbita moschata] >XP_022986427.1 reactive oxygen species modulator 1 isoform X2 [Cucurbita maxima] >XP_023511835.1 reactive oxygen species modulator 1 [Cucurbita pepo subsp. pepo] >KGN48107.1 hypothetical protein Csa_6G432800 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-20
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

BLAST of Carg06884 vs. NCBI nr
Match: XP_006362315.1 (PREDICTED: reactive oxygen species modulator 1-like [Solanum tuberosum] >XP_015057079.1 PREDICTED: reactive oxygen species modulator 1-like [Solanum pennellii])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEA+RFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAVRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

BLAST of Carg06884 vs. NCBI nr
Match: XP_023876465.1 (reactive oxygen species modulator 1 [Quercus suber] >POE81171.1 reactive oxygen species modulator 1 [Quercus suber])

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGL+KIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLMKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

BLAST of Carg06884 vs. NCBI nr
Match: XP_012455136.1 (PREDICTED: reactive oxygen species modulator 1-like isoform X2 [Gossypium raimondii] >XP_016728217.1 PREDICTED: reactive oxygen species modulator 1-like [Gossypium hirsutum] >XP_016699771.1 PREDICTED: reactive oxygen species modulator 1-like [Gossypium hirsutum] >XP_017649162.1 PREDICTED: reactive oxygen species modulator 1-like [Gossypium arboreum] >KHG15555.1 hypothetical protein F383_22847 [Gossypium arboreum] >KJB73084.1 hypothetical protein B456_011G214000 [Gossypium raimondii] >PPR81117.1 hypothetical protein GOBAR_AA39595 [Gossypium barbadense])

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIR+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

BLAST of Carg06884 vs. NCBI nr
Match: XP_017618573.1 (PREDICTED: reactive oxygen species modulator 1-like [Gossypium arboreum] >XP_022747173.1 reactive oxygen species modulator 1-like [Durio zibethinus])

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIR+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

BLAST of Carg06884 vs. TAIR10
Match: AT3G07910.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 89.7 bits (221), Expect = 8.0e-19
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MA++SCLA++TXXXXXXXXXXXXXXXXXXXYEAIR KVPGL K+R+IGQTTL SAAIFGL
Sbjct: 1  MAKNSCLAKITXXXXXXXXXXXXXXXXXXXYEAIRVKVPGLHKVRFIGQTTLSSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGK Y
Sbjct: 61 FLGAGSLIHCGKGY 74

BLAST of Carg06884 vs. TrEMBL
Match: tr|A0A1S3BLX4|A0A1S3BLX4_CUCME (reactive oxygen species modulator 1 OS=Cucumis melo OX=3656 GN=LOC103491480 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.1e-20
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

BLAST of Carg06884 vs. TrEMBL
Match: tr|A0A0A0KIA0|A0A0A0KIA0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G432800 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.1e-20
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

BLAST of Carg06884 vs. TrEMBL
Match: tr|A0A0V0GIY8|A0A0V0GIY8_SOLCH (Putative reactive oxygen species modulator 1-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-20
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEA+RFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAVRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

BLAST of Carg06884 vs. TrEMBL
Match: tr|M1D379|M1D379_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102579057 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-20
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEA+RFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAVRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

BLAST of Carg06884 vs. TrEMBL
Match: tr|A0A2P4JKD3|A0A2P4JKD3_QUESU (Reactive oxygen species modulator 1 OS=Quercus suber OX=58331 GN=CFP56_30360 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.7e-20
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGL+KIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTXXXXXXXXXXXXXXXXXXXYEAIRFKVPGLMKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008449669.17.7e-20100.00PREDICTED: reactive oxygen species modulator 1 [Cucumis melo] >XP_004140202.2 PR... [more]
XP_006362315.11.0e-1998.65PREDICTED: reactive oxygen species modulator 1-like [Solanum tuberosum] >XP_0150... [more]
XP_023876465.11.3e-1998.65reactive oxygen species modulator 1 [Quercus suber] >POE81171.1 reactive oxygen ... [more]
XP_012455136.11.7e-1998.65PREDICTED: reactive oxygen species modulator 1-like isoform X2 [Gossypium raimon... [more]
XP_017618573.11.7e-1998.65PREDICTED: reactive oxygen species modulator 1-like [Gossypium arboreum] >XP_022... [more]
Match NameE-valueIdentityDescription
AT3G07910.18.0e-1986.49FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BLX4|A0A1S3BLX4_CUCME5.1e-20100.00reactive oxygen species modulator 1 OS=Cucumis melo OX=3656 GN=LOC103491480 PE=4... [more]
tr|A0A0A0KIA0|A0A0A0KIA0_CUCSA5.1e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G432800 PE=4 SV=1[more]
tr|A0A0V0GIY8|A0A0V0GIY8_SOLCH6.7e-2098.65Putative reactive oxygen species modulator 1-like OS=Solanum chacoense OX=4108 P... [more]
tr|M1D379|M1D379_SOLTU6.7e-2098.65Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102579057 PE=4 SV=1[more]
tr|A0A2P4JKD3|A0A2P4JKD3_QUESU8.7e-2098.65Reactive oxygen species modulator 1 OS=Quercus suber OX=58331 GN=CFP56_30360 PE=... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018450Romo1/Mgr2
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06884-RACarg06884-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018450Romo1/Mgr2SMARTSM01378Romo1_2coord: 4..70
e-value: 1.1E-31
score: 121.3
IPR018450Romo1/Mgr2PFAMPF10247Romo1coord: 5..70
e-value: 7.7E-23
score: 80.5
IPR018450Romo1/Mgr2PANTHERPTHR28525FAMILY NOT NAMEDcoord: 1..74
NoneNo IPR availablePANTHERPTHR28525:SF3SUBFAMILY NOT NAMEDcoord: 1..74

The following gene(s) are paralogous to this gene:

None