Cp4.1LG16g08500 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g08500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionReactive oxygen species modulator 1
LocationCp4.1LG16 : 8200599 .. 8202721 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCATGGTCGTGGTTTCAACTGTGCTGAGGCGCAGGCTGATGAAAGCCCAGATGCTTGTACCCGAACAGCCATTCTGTGAGATCGGAGAATTCAACTTTCAAAAAGAATCGTGTTGAAAAGATTGTTGAGATACATTTCGAAGCTTAATTGCTCGAGGAACAAATTTTCTCCGTCTCTTGTTCGAGGAGAATAATATTAAGGTCTCTGAGAATGGCGAGAGATAGCTGCTTGGCTCGAGTTACTGCGGGAGTTGCCGTTGGTGGTGCTGTAGGTGGAGCCGTCGGTAAGGAAACCCTAAATTTTCTTCAAAGTTCTAATGCCTGTTGTCTTCTTATATATCATTGATATTCCCGTATTTCTTTTGTTTCTCGACTTCCGAATTTCGGTTATGGTTTGATCGTTGTTCCGCTTTCTCAGCGATTGATATTTTGTCAAGTGGAATAGGATTTGTTGGATTGAAGAGTTTGCATACGCAGGAAGCTAAATATTTGGTCAAGTTGCGCTCTTGCATCTGTGATTGAACCATGTTTATCAGTGTTAATGTACTACTAAGAAATATACCGCTGTGAAGCCTTGGATATATTTAATTCTTCCATCTTATCTTTAAAGCTACGTTTCCTTTGGATTTTATAAAATAAGGCTTTATTTGTTGGATAATATCACTTGCTGGTGGACATAGTTTTTGTTGAGTAGAAAGAGTTCTTAGCTTTTTAGGGCCCATCGTAATGAATATTTTGATTGAACTGCTGTAGATTTAACCTGTCAAGCATGGAGTCAACTAATCTTATCTTTGGGGTCTGTTGTACTCCATTGGCCTATTTTGTGTATACCTCATAAAGTTCACCGGAACTTGTGTGCTGACTTCCTGAAGCTCAAAGTTTAACCTTATTTAACAAGTAGCAGTGTACTTTTTCAAGAAGCTCCTTATTTTGCTTTCTTCATTTCAATAGAGTGTCGAGCATTATGAACTAGCCAGTGCCACAACTTTGAAGATATACATCAGTTATGAAATCTCTGTAACCAACAATTCGGGTTATCATTTCTTGTTTTTTAATATTTAGATTGGACGGCCTTTCTTGTTTAGAGTATCTTACAATCAATGCTGCAATATATTTGTTTCATCAGAATTATGATATGCTTTGGCTAAGGATTCTAGAACTAACTTTTTTTTTTCTCTAGGTGCTGTTTATGGGACTTATGAGGCCATTAGGTTTAAGGTATACTATCTTCTCCGATCCAAATCTTCAAAAAATATGACTTTTGAAATTCGACCTCGTCTCTCTGCTGTTTTATGATTTTATTAAGTTACTCATCAAATTATCGCAAATAGTTAATCCTTTTCCATCTGTTTTTGTTTACAATTAATTAACGTCTTATCTAAACATCTTGAAACTAATATGAGATTCCATCTCATCATCATTAGAAATTCTATGATCATGGGAGACTACCCAAAGTTATGTTTCATTAGCTTGGGATCAAAATTTGCAGTCAATCTACTTTAAATTTACTACACATTTAGCCCTTTTAGAAACAAATTTCATGATTTCTTCCATGATTGGTAATTCTTCCTGAGTTTCTATATTTCTTTCTGCAGACAAATGTCTATGCCTTGAACCATTTTTGCTCATTTTCTTCATTCTTACTATTCAAGTTTCTGTCATTGAAACCCGAAGATTACAACGTCCCAGTTACCATTTACTTATTTCAACTCCAGGTGATGATAGATGGTAATTAACTATGGACCAAACTTGCATTTGTTCGTGCAGGTGCCAGGGCTTCTGAAGATCAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGCCTTTTCTTAGGGGCAGGGAGTTTGATACATTGTGGAAAGTCATACTGAATCTCACAAGTTCCTGAATTTGGATGAGATAATATTGTTTGCTTTTAGTTTCCTTGCTTTTCAACATGAAGTTATTGCAGACGGTCATTTGTTTAGTTAAAAGGTTCCGTTTGTTTTAGTTTAAGGAACAAAATGGTCAATTGATGATGCCTTCAGCCCTACTTGGATGTGAAGTTTTCAAGTTTTGTTTGCCTCATGATTTGTCAATTTAATAAAATATTGTTGTCGACCAACATTTTTT

mRNA sequence

GCCCATGGTCGTGGTTTCAACTGTGCTGAGGCGCAGGCTGATGAAAGCCCAGATGCTTGTACCCGAACAGCCATTCTGTCTCTGAGAATGGCGAGAGATAGCTGCTTGGCTCGAGTTACTGCGGGAGTTGCCGTTGGTGGTGCTGTAGGTGGAGCCGTCGGTGCTGTTTATGGGACTTATGAGGCCATTAGGTTTAAGGTGCCAGGGCTTCTGAAGATCAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGCCTTTTCTTAGGGGCAGGGAGTTTGATACATTGTGGAAAGTCATACTGAATCTCACAAGTTCCTGAATTTGGATGAGATAATATTGTTTGCTTTTAGTTTCCTTGCTTTTCAACATGAAGTTATTGCAGACGGTCATTTGTTTAGTTAAAAGGTTCCGTTTGTTTTAGTTTAAGGAACAAAATGGTCAATTGATGATGCCTTCAGCCCTACTTGGATGTGAAGTTTTCAAGTTTTGTTTGCCTCATGATTTGTCAATTTAATAAAATATTGTTGTCGACCAACATTTTTT

Coding sequence (CDS)

GCCCATGGTCGTGGTTTCAACTGTGCTGAGGCGCAGGCTGATGAAAGCCCAGATGCTTGTACCCGAACAGCCATTCTGTCTCTGAGAATGGCGAGAGATAGCTGCTTGGCTCGAGTTACTGCGGGAGTTGCCGTTGGTGGTGCTGTAGGTGGAGCCGTCGGTGCTGTTTATGGGACTTATGAGGCCATTAGGTTTAAGGTGCCAGGGCTTCTGAAGATCAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGCCTTTTCTTAGGGGCAGGGAGTTTGATACATTGTGGAAAGTCATACTGA

Protein sequence

AHGRGFNCAEAQADESPDACTRTAILSLRMARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Homology
[Close]
BLAST of Cp4.1LG16g08500 vs. TrEMBL
Match: A0A0A0KIA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G432800 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.8e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1   MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. TrEMBL
Match: M1D379_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031241 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-31
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVA+GGAVGGAVGAVYGTYEA+RFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1   MARDSCLARVTAGVAIGGAVGGAVGAVYGTYEAVRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. TrEMBL
Match: A0A0V0GIY8_SOLCH (Putative reactive oxygen species modulator 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-31
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVA+GGAVGGAVGAVYGTYEA+RFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1   MARDSCLARVTAGVAIGGAVGGAVGAVYGTYEAVRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. TrEMBL
Match: A0A0B0NRS1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22847 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-31
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1   MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. TrEMBL
Match: A0A0D2UW89_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G214000 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-31
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1   MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. TAIR10
Match: AT3G07910.1 (AT3G07910.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 127.1 bits (318), Expect = 6.3e-30
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MA++SCLA++TAGVAVGGA+GGAVGAVYGTYEAIR KVPGL K+R+IGQTTL SAAIFGL
Sbjct: 1   MAKNSCLAKITAGVAVGGALGGAVGAVYGTYEAIRVKVPGLHKVRFIGQTTLSSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGK Y
Sbjct: 61  FLGAGSLIHCGKGY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. NCBI nr
Match: gi|659097517|ref|XP_008449669.1| (PREDICTED: uncharacterized protein LOC103491480 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1   MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. NCBI nr
Match: gi|565393293|ref|XP_006362315.1| (PREDICTED: reactive oxygen species modulator 1-like [Solanum tuberosum])

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-31
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVA+GGAVGGAVGAVYGTYEA+RFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1   MARDSCLARVTAGVAIGGAVGGAVGAVYGTYEAVRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. NCBI nr
Match: gi|823244924|ref|XP_012455136.1| (PREDICTED: reactive oxygen species modulator 1-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 142.9 bits (359), Expect = 3.1e-31
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1   MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. NCBI nr
Match: gi|225436610|ref|XP_002279769.1| (PREDICTED: reactive oxygen species modulator 1 [Vitis vinifera])

HSP 1 Score: 142.5 bits (358), Expect = 4.1e-31
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIR+KVPGLLKIRYIGQTTLGSAA+FGL
Sbjct: 1   MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAVFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

[Close]
BLAST of Cp4.1LG16g08500 vs. NCBI nr
Match: gi|224105955|ref|XP_002313992.1| (hypothetical protein POPTR_0009s07620g [Populus trichocarpa])

HSP 1 Score: 142.1 bits (357), Expect = 5.3e-31
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 30  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 89
           MARDSCLARVTAGVAVGGA+GGAVGAVYGTYEA+R+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1   MARDSCLARVTAGVAVGGAIGGAVGAVYGTYEAVRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 90  FLGAGSLIHCGKSY 104
           FLGAGSLIHCGKSY
Sbjct: 61  FLGAGSLIHCGKSY 74

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g08500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g08500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIA0_CUCSA9.8e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G432800 PE=4 SV=1[more]
M1D379_SOLTU1.7e-3197.30Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031241 PE=4 SV=1[more]
A0A0V0GIY8_SOLCH1.7e-3197.30Putative reactive oxygen species modulator 1-like OS=Solanum chacoense PE=4 SV=1[more]
A0A0B0NRS1_GOSAR2.2e-3198.65Uncharacterized protein OS=Gossypium arboreum GN=F383_22847 PE=4 SV=1[more]
A0A0D2UW89_GOSRA2.2e-3198.65Uncharacterized protein OS=Gossypium raimondii GN=B456_011G214000 PE=4 SV=1[more]
BLAST of Cp4.1LG16g08500 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07910.16.3e-3085.14 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Cp4.1LG16g08500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097517|ref|XP_008449669.1|1.4e-31100.00PREDICTED: uncharacterized protein LOC103491480 [Cucumis melo][more]
gi|565393293|ref|XP_006362315.1|2.4e-3197.30PREDICTED: reactive oxygen species modulator 1-like [Solanum tuberosum][more]
gi|823244924|ref|XP_012455136.1|3.1e-3198.65PREDICTED: reactive oxygen species modulator 1-like isoform X2 [Gossypium raimon... [more]
gi|225436610|ref|XP_002279769.1|4.1e-3197.30PREDICTED: reactive oxygen species modulator 1 [Vitis vinifera][more]
gi|224105955|ref|XP_002313992.1|5.3e-3195.95hypothetical protein POPTR_0009s07620g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018450Romo1/Mgr2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g08500.1Cp4.1LG16g08500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018450Romo1/Mgr2PFAMPF10247Romo1coord: 34..99
score: 2.8
IPR018450Romo1/Mgr2SMARTSM01378Romo1_2coord: 33..99
score: 1.1
NoneNo IPR availablePANTHERPTHR28525FAMILY NOT NAMEDcoord: 24..103
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g08500Cucsa.123950Cucumber (Gy14) v1cgycpeB0315
Cp4.1LG16g08500CmaCh20G001040Cucurbita maxima (Rimu)cmacpeB564
Cp4.1LG16g08500CmoCh20G001080Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g08500Csa6G432800Cucumber (Chinese Long) v2cpecuB281
Cp4.1LG16g08500MELO3C014567Melon (DHL92) v3.5.1cpemeB278
Cp4.1LG16g08500ClCG02G022950Watermelon (Charleston Gray)cpewcgB255
Cp4.1LG16g08500CSPI06G23930Wild cucumber (PI 183967)cpecpiB283
Cp4.1LG16g08500MELO3C014567.2Melon (DHL92) v3.6.1cpemedB324
Cp4.1LG16g08500CsaV3_6G039080Cucumber (Chinese Long) v3cpecucB0348
Cp4.1LG16g08500Bhi10G000206Wax gourdcpewgoB0354
Cp4.1LG16g08500CsGy6G023290Cucumber (Gy14) v2cgybcpeB755
Cp4.1LG16g08500Carg06884Silver-seed gourdcarcpeB0733
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g08500Cucurbita pepo (Zucchini)cpecpeB287
Cp4.1LG16g08500Cucurbita pepo (Zucchini)cpecpeB305
Cp4.1LG16g08500Cucurbita pepo (Zucchini)cpecpeB310
Cp4.1LG16g08500Cucurbita maxima (Rimu)cmacpeB125
Cp4.1LG16g08500Cucurbita maxima (Rimu)cmacpeB627
Cp4.1LG16g08500Cucurbita moschata (Rifu)cmocpeB053
Cp4.1LG16g08500Cucurbita moschata (Rifu)cmocpeB102
Cp4.1LG16g08500Cucurbita moschata (Rifu)cmocpeB576
Cp4.1LG16g08500Wild cucumber (PI 183967)cpecpiB268
Cp4.1LG16g08500Bottle gourd (USVL1VR-Ls)cpelsiB227
Cp4.1LG16g08500Bottle gourd (USVL1VR-Ls)cpelsiB246
Cp4.1LG16g08500Watermelon (Charleston Gray)cpewcgB276
Cp4.1LG16g08500Watermelon (97103) v1cpewmB287
Cp4.1LG16g08500Cucumber (Gy14) v2cgybcpeB037
Cp4.1LG16g08500Silver-seed gourdcarcpeB1273
Cp4.1LG16g08500Cucumber (Chinese Long) v3cpecucB0333
Cp4.1LG16g08500Wax gourdcpewgoB0375