MELO3C014567 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014567
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Reactive oxygen species modulator 1
Location	chr5 : 1304875 .. 1306955 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCCTGAAAGGATTCGGTGATAGTTGATATTCAATTCGAAGCTTAATTGCTCGAAGAACAAATTTTTTCTTTGTGTGTTTTCTTCGAGGAGAATAATATCAAGGTCGCTGAGTATGGCGAGAGACAGCTGTTTGGCTCGAGTTACTGCCGGAGTTGCCGTTGGTGGCGCCGTAGGAGGAGCCGTCGGTAAGGAAAACCCTAAATTTTCGTTGGAGAAGTTCAGTCCTATTATTATCTGTCGTCTTCTTATTCCTATTCCGGTTTTACTTTTCTTTCTCGAGTTCTGAGCTTCCGGTTATGGTTTGATTGTTGTTTCGACTCATCGACGATTGAGTAGTTATATGTATGGGATGTGTTGGATTAAATAGTTTATAGTTTTATATGAGGAGGAAGCTGGATATTTTGGTCTATTTGTGTTCTTGCATCTGTAATTGAACCATGTTTGTTTTTCAGTGATAATGTACTACTAAGAATTATACCGCTATGTAACCTTGAGTGCCTTATCGAATTATTTCATTTGATTTCTCATGTTAAATCTATGTTTCCTTCGGTTTGTATAAATTAAGGCTTTATTTGTTTGATCATATCACTTGATTGTGGACTTTATTTTGCCCATGTTAATGATTAATTTTGAAGTACTTTGGTAGGTTTAACTTGTGAAGTATGGAGTCAACTAATCTTATGTTATGTACTCAAAAACATAAATTGACCGGAACTTGTGTTAAAGCATGTAGCTTAGTGATTATCGTTTATTATCCGTCTTCCATCCGAAAATGTATTGACTACTTGATGCTCAGTTTTAATCTTATATTGCCAGAGTATAGATTTTCAAGATGCTTGTTATTTGATTTCTCCGTTATCAATCTATTAGTGTTGAGCAATGCGCATTATGAACTAGCTAGTGCAACGATCTTGATGCTATACATCAATATTTGGATCAAAGTTCTATATGTATATATTTTTCCTGTCTATGGAGTATAACTCCACTCCGAGAGTTTCTTTCCATGTTTTCATCCGAATTTTGGAGTATGTGGTATGTGTTGGCTGAGGATTCTAGAACTAACAGGTTTCTTTTTCTTTTTCTAGGTGCTGTTTATGGGACTTATGAGGCCATTAGATTTAAGGTATACTATCTCTGATAAATTCAACCACGGCTCTCTTCTTAACTCTATTATGATGACCTAAAGTTTCTCATCAAATTATCATGAATAGTTAATCTTTTTCCAGTTAACTAGTGTCTTATCTAAACATCTTGAAACTAATATGAGATTCCGGCACTGCCTCATTAGGAATTCTATTGTCAGGGGAGATTACCAAAGTTATGTTCTATTAGCATGGTGATCAAAATTATTCGCACTCACCCAACTTTGAACTGAAAAATAAAATATTACAGATTTTGGCCTTGTGGAAACAAATTTTATAATCTTTTCTATTTTTATATTCTTCTTCCTGTTATTCTCAATTGATTTGTGGAGAGGAAAACTCATAGATTATAGGGGAATTGTTCGTATTCCTGAATATTGCTACATTTGTTTCAATTATTCATTCTTATTATGTTAAGTTTTAGTCTTATAGGCCCAAAGATTATCAAAAAGAAAAACTTAAAACAGCTTCTGATGATGATAGATGGGAATGAATTACTGTCTAAACTTGCATTTGTTCTTTGCAGGTCCCAGGACTATTGAAAATTAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGCCTTTTCTTAGGGGCAGGGAGTTTGATACATTGTGGAAAGTCATATTAAATCACAAGGTTTTGTAATTGGATCAGATAATATTGTTTCTTTTTTTTTTTAATCTTCTTTTAGATTCCTTGCTTTTCAACATGAAGTTTGAGTTAGTGCAGTTGGTCATTTGTTTATTTAAAGGCTTCCATTTGTGGTTGTTGGTTAAAAGAACAAAGTGGTCAATTGATGGTGATATGGTTTCACCCTATTTAGATGTCATGAAATATTGATTCTCGTTTCGAGATTTTAATTTTAGGGATATATCGAGTTATCTTTTAAATTAAAAGATTCATCAAAGTTGTTTTGATTCTTGAT

mRNA sequence

AGTCCTGAAAGGATTCGGTGATAGTTGATATTCAATTCGAAGCTTAATTGCTCGAAGAACAAATTTTTTCTTTGTGTGTTTTCTTCGAGGAGAATAATATCAAGGTCGCTGAGTATGGCGAGAGACAGCTGTTTGGCTCGAGTTACTGCCGGAGTTGCCGTTGGTGGCGCCGTAGGAGGAGCCGTCGGTGCTGTTTATGGGACTTATGAGGCCATTAGATTTAAGGTCCCAGGACTATTGAAAATTAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGCCTTTTCTTAGGGGCAGGGAGTTTGATACATTGTGGAAAGTCATATTAAATCACAAGGTTTTGTAATTGGATCAGATAATATTGTTTCTTTTTTTTTTTAATCTTCTTTTAGATTCCTTGCTTTTCAACATGAAGTTTGAGTTAGTGCAGTTGGTCATTTGTTTATTTAAAGGCTTCCATTTGTGGTTGTTGGTTAAAAGAACAAAGTGGTCAATTGATGGTGATATGGTTTCACCCTATTTAGATGTCATGAAATATTGATTCTCGTTTCGAGATTTTAATTTTAGGGATATATCGAGTTATCTTTTAAATTAAAAGATTCATCAAAGTTGTTTTGATTCTTGAT

Coding sequence (CDS)

ATGGCGAGAGACAGCTGTTTGGCTCGAGTTACTGCCGGAGTTGCCGTTGGTGGCGCCGTAGGAGGAGCCGTCGGTGCTGTTTATGGGACTTATGAGGCCATTAGATTTAAGGTCCCAGGACTATTGAAAATTAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGCCTTTTCTTAGGGGCAGGGAGTTTGATACATTGTGGAAAGTCATATTAA

Protein sequence

MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY*

Homology

[Close]

BLAST of MELO3C014567 vs. TrEMBL
Match: A0A0A0KIA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G432800 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

[Close]

BLAST of MELO3C014567 vs. TrEMBL
Match: A0A0V0GIY8_SOLCH (Putative reactive oxygen species modulator 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-33
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVA+GGAVGGAVGAVYGTYEA+RFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTAGVAIGGAVGGAVGAVYGTYEAVRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

[Close]

BLAST of MELO3C014567 vs. TrEMBL
Match: M1D379_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031241 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-33
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVA+GGAVGGAVGAVYGTYEA+RFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTAGVAIGGAVGGAVGAVYGTYEAVRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

[Close]

BLAST of MELO3C014567 vs. TrEMBL
Match: A0A0D2UW89_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G214000 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-33
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

[Close]

BLAST of MELO3C014567 vs. TrEMBL
Match: A0A0B0NRS1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22847 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-33
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

[Close]

BLAST of MELO3C014567 vs. TAIR10
Match: AT3G07910.1 (AT3G07910.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-31
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MA++SCLA++TAGVAVGGA+GGAVGAVYGTYEAIR KVPGL K+R+IGQTTL SAAIFGL
Sbjct: 1  MAKNSCLAKITAGVAVGGALGGAVGAVYGTYEAIRVKVPGLHKVRFIGQTTLSSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGK Y
Sbjct: 61 FLGAGSLIHCGKGY 74

[Close]

BLAST of MELO3C014567 vs. NCBI nr
Match: gi|659097517|ref|XP_008449669.1| (PREDICTED: uncharacterized protein LOC103491480 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 3.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

[Close]

BLAST of MELO3C014567 vs. NCBI nr
Match: gi|565393293|ref|XP_006362315.1| (PREDICTED: reactive oxygen species modulator 1-like [Solanum tuberosum])

HSP 1 Score: 148.3 bits (373), Expect = 5.4e-33
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVA+GGAVGGAVGAVYGTYEA+RFKVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTAGVAIGGAVGGAVGAVYGTYEAVRFKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

[Close]

BLAST of MELO3C014567 vs. NCBI nr
Match: gi|823244924|ref|XP_012455136.1| (PREDICTED: reactive oxygen species modulator 1-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 147.9 bits (372), Expect = 7.1e-33
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

[Close]

BLAST of MELO3C014567 vs. NCBI nr
Match: gi|225436610|ref|XP_002279769.1| (PREDICTED: reactive oxygen species modulator 1 [Vitis vinifera])

HSP 1 Score: 147.5 bits (371), Expect = 9.2e-33
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIR+KVPGLLKIRYIGQTTLGSAA+FGL
Sbjct: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAVFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

[Close]

BLAST of MELO3C014567 vs. NCBI nr
Match: gi|224105955|ref|XP_002313992.1| (hypothetical protein POPTR_0009s07620g [Populus trichocarpa])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MARDSCLARVTAGVAVGGAVGGAVGAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGL 60
          MARDSCLARVTAGVAVGGA+GGAVGAVYGTYEA+R+KVPGLLKIRYIGQTTLGSAAIFGL
Sbjct: 1  MARDSCLARVTAGVAVGGAIGGAVGAVYGTYEAVRYKVPGLLKIRYIGQTTLGSAAIFGL 60

Query: 61 FLGAGSLIHCGKSY 75
          FLGAGSLIHCGKSY
Sbjct: 61 FLGAGSLIHCGKSY 74

The following BLAST results are available for this feature:

BLAST of MELO3C014567 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIA0_CUCSA	2.2e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G432800 PE=4 SV=1	[more]
A0A0V0GIY8_SOLCH	3.8e-33	97.30	Putative reactive oxygen species modulator 1-like OS=Solanum chacoense PE=4 SV=1	[more]
M1D379_SOLTU	3.8e-33	97.30	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031241 PE=4 SV=1	[more]
A0A0D2UW89_GOSRA	4.9e-33	98.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G214000 PE=4 SV=1	[more]
A0A0B0NRS1_GOSAR	4.9e-33	98.65	Uncharacterized protein OS=Gossypium arboreum GN=F383_22847 PE=4 SV=1	[more]

BLAST of MELO3C014567 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07910.1	1.4e-31	85.14	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of MELO3C014567 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097517\|ref\|XP_008449669.1\|	3.2e-33	100.00	PREDICTED: uncharacterized protein LOC103491480 [Cucumis melo]	[more]
gi\|565393293\|ref\|XP_006362315.1\|	5.4e-33	97.30	PREDICTED: reactive oxygen species modulator 1-like [Solanum tuberosum]	[more]
gi\|823244924\|ref\|XP_012455136.1\|	7.1e-33	98.65	PREDICTED: reactive oxygen species modulator 1-like isoform X2 [Gossypium raimon...	[more]
gi\|225436610\|ref\|XP_002279769.1\|	9.2e-33	97.30	PREDICTED: reactive oxygen species modulator 1 [Vitis vinifera]	[more]
gi\|224105955\|ref\|XP_002313992.1\|	1.2e-32	95.95	hypothetical protein POPTR_0009s07620g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018450	Romo1/Mgr2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU51399	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014567T1	MELO3C014567T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU51399	MU51399	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018450	Romo1/Mgr2	PFAM	PF10247	Romo1	coord: 5..70 score: 9.2
IPR018450	Romo1/Mgr2	SMART	SM01378	Romo1_2	coord: 4..70 score: 1.1
None	No IPR available	PANTHER	PTHR28525	FAMILY NOT NAMED	coord: 1..74 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014567	Csa6G432800	Cucumber (Chinese Long) v2	cumeB491
MELO3C014567	ClCG02G022950	Watermelon (Charleston Gray)	mewcgB376
MELO3C014567	Cla97C02G049030	Watermelon (97103) v2	mewmbB377
MELO3C014567	Bhi10G000206	Wax gourd	mewgoB484
MELO3C014567	CSPI06G23930	Wild cucumber (PI 183967)	cpimeB493
MELO3C014567	Cucsa.123950	Cucumber (Gy14) v1	cgymeB193
MELO3C014567	CmaCh20G001040	Cucurbita maxima (Rimu)	cmameB521
MELO3C014567	CmoCh20G001080	Cucurbita moschata (Rifu)	cmomeB509
MELO3C014567	Cp4.1LG16g08500	Cucurbita pepo (Zucchini)	cpemeB278
MELO3C014567	CsGy6G023290	Cucumber (Gy14) v2	cgybmeB432
MELO3C014567	Carg06884	Silver-seed gourd	carmeB0528
MELO3C014567	CsaV3_6G039080	Cucumber (Chinese Long) v3	cucmeB503

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014567	Cucurbita moschata (Rifu)	cmomeB070
MELO3C014567	Cucurbita moschata (Rifu)	cmomeB123
MELO3C014567	Cucurbita moschata (Rifu)	cmomeB561
MELO3C014567	Wild cucumber (PI 183967)	cpimeB071
MELO3C014567	Cucumber (Chinese Long) v2	cumeB072
MELO3C014567	Watermelon (Charleston Gray)	mewcgB380
MELO3C014567	Watermelon (97103) v1	mewmB419
MELO3C014567	Cucurbita pepo (Zucchini)	cpemeB341
MELO3C014567	Cucurbita pepo (Zucchini)	cpemeB637
MELO3C014567	Cucurbita pepo (Zucchini)	cpemeB696
MELO3C014567	Bottle gourd (USVL1VR-Ls)	lsimeB072
MELO3C014567	Bottle gourd (USVL1VR-Ls)	lsimeB415
MELO3C014567	Cucumber (Gy14) v2	cgybmeB064
MELO3C014567	Silver-seed gourd	carmeB0910
MELO3C014567	Cucumber (Chinese Long) v3	cucmeB075
MELO3C014567	Watermelon (97103) v2	mewmbB381
MELO3C014567	Wax gourd	mewgoB496
MELO3C014567	Melon (DHL92) v3.5.1	memeB109
MELO3C014567	Cucurbita maxima (Rimu)	cmameB077
MELO3C014567	Cucurbita maxima (Rimu)	cmameB131
MELO3C014567	Cucurbita maxima (Rimu)	cmameB572