ClCG02G022950 (gene) Watermelon (Charleston Gray)

NameClCG02G022950
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionWGS project CAID00000000 data, contig chromosome 04
LocationCG_Chr02 : 37381060 .. 37383504 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGATTGTTGTTGATATTCAATTCGAAGCTTAATTGCTCGAGGAATAAATTTTCTGTGTTTTCTTCGAGGAGAATCGCTGAGTATGGCGAGAGATAGCTGTTTGGCTCGAGTTACTGCCGGAGTTGCCGTTGGTGGCGCTGTAGGCGGAGCCGTCGGTAAGGAAAACCCTAAATTTTCTTCAAAGTTCAATTCTGTTACCTGTCGTCTTCTTATATATCCTTGTTATTCCCTTTTTCCTTTTGTTTCTCGAGTTCCGAGTTCTGGTTATGGTTTGATTGTTGTTCCGCTTCTTCGGTTATTGAGTAGTTATATGTATGGGATGTGTTGGATTAAAGAGTTTGACATAAGCAGGAAGCTGGATAATTGGTCAAGTTGCGTTCTTGCATCTGTGATTGAACCATGTTTGTTTTTCCGTGAAAATGTACTACTAGAAAATTTAGCGCCATGTAACCTTGGGTACCCTATAGAATTCTTCCATTTGATCTCTCATGTTAAAGCTATGTTTCCTTCAGTTTTTATAAATCAAGGCTTTATTTGTTGGATCATATCACTTGCTTGTGGAGATTATCTTCATTGTGTAGAAAGAGTTCTTAGCTTTTCATTGCCCATGTCATTATTGTGTAGAGCATGTTTGGGTTTGGGAGTGATTTTACAATAATCACTTTTGTCATTTTCAAAATCACTATAAAACATGTTTTTTTATTGTTTTGGAGTGATTGAAAGCATGTTTTAGAGTAATTTTAAAAATGACAAAAGTAATTTTGACGGTTTTAAAATCATTCCCAAACATAGACTTAACTTGTTAAGTATGAAGTCAATTGATCTGATGTTTGGCGTCTGGTTGTACTCCATAGGCTTATTTTGTGTATACCTCTTAAAGTTGGCCGGAACTTGTGTTAAAGAATGTAGCTTAGTGATTATCATTTATGATCCATCTTCCATCCCAGAATGTACTGACTACTTGATGCTCAAAGTTTTAACCTTATTTAAATTGTAACATTATACTTTTTAAGGAAGCTCCTTATTTGCTTTCTCCATTTTTAATCTATTAGAGTGTCGAGCATTACGAACTAGCCAGTGCCACAACTTTGAAGATATACGTCAGTAATTAAGCCATTGTAATCAACAATTTTGGCTATCTCTCTTTCTTTTTGAATTTTAATATTGGACGGCCTTTTATGTTTTAGAGTTTCTTACAATTAATTTTATTCAATTTTTTTCCTGTGTACGGAGTATAACTCCGCGCACCCCCACAATAGTTTCTTTCCATGCTTTTCTTCAGTTGTGTGCTACAGTTTTAACTGATACAATATGTGCCATCCGAATTTTGAAGTATGATATGTTTTGGCTAAGGATTCTAGAACTAACACATTTTTTTCTCTAGGTGCTGTTTATGGGACCTATGAGGCAATTAGATTTAAGGTATACTATCTTCTCTGATCCAAATCTTTTAAAAAAACAAGACTTGGAATTCAACCACGGCTAATCTGTGTTTTGATGATTTGAAGTTTCTCATCAAATTATTATGAATATTTAATCTTTTTCCAATTAATTAATGTTTTATCTAAACATTTTGAAACTAATATAGCAATATGAGATTCCAGCTCTGCCTCATTAGGAATTCTATGATCATAGGAGACTACAATAGTTATATTTTATTAGCATGGGATCAAAATTCGCGTCAACCTACTTTGAAGTGAAAATGAAATACTACACATTTGGCCTTCTAAAATCAAATTTCATTATCTTCTTCCACGTATTTTATATTCTTCTTCGTGTTATTCTAAATTGTTAATTAGATGAGAGGAATCCATAGATTATAGGGAATTGTTAATTATTCCTGAAATTGCTACATTCGTTTCTACAGACAAACGTCTATTCCCTGTCTTAAGCCCTTTTGCATTATTCATTCTCACTATGTTAAGTTTTTGCCCTAAAAACCCAAAGATTTATGACAAACTTCATACAGTTCCTGGTGATGATGGATGGCAATGAATTATTTACCTAAACTTGCATTTGTTCTTGCAGGTGCCAGGACTTTTGAAAATTAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGCCTTTTCTTAGGTGCAGGGAGTTTGATACATTGTGGAAAGTCATATTAAAGCATAAGCTCCTGTATTTGGGTCAGATAATATTGTTTGTTTTTTAGATTTCTTGCTTTTGAACATGAAGTTAGTGCAGCAGGTCATTTGTTTATTTAAAAAGCTTCCATTTGTGGTTGTTGGTTAAAAGGAACAAAGTGGTCAATTGATGGTGATATGGCTTCACCCTACTCGGATATGGATTTTCAAGTTTTCATGACATAAAATATTTATGTTGATTTCGACATTTTCGATCAAATATTTCTATCGGCGGATATTTTGTAAATAAAAAATTCTAGAAGTTATTAAATTAATAATCAAG

mRNA sequence

GGTGATTGTTGTTGATATTCAATTCGAAGCTTAATTGCTCGAGGAATAAATTTTCTGTGTTTTCTTCGAGGAGAATCGCTGAGTATGGCGAGAGATAGCTGTTTGGCTCGAGTTACTGCCGGAGTTGCCGTTGGTGGCGCTGTAGGCGGAGCCGTCGTTCCGAGTTCTGGTTATGGTTTGATTGTTGTTCCGCTTCTTCGGTTATTGAGTAGTTATATGTATGGGATGTGTTGGATTAAAGAGTTTGACATAAGCAGGAAGCTGGATAATTGGTCAAGTTGCGTTCTTGCATCTGTGATTGAACCATGTGCTGTTTATGGGACCTATGAGGCAATTAGATTTAAGGTGCCAGGACTTTTGAAAATTAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGCCTTTTCTTAGGTGCAGGGAGTTTGATACATTGTGGAAAGTCATATTAAAGCATAAGCTCCTGTATTTGGGTCAGATAATATTGTTTGTTTTTTAGATTTCTTGCTTTTGAACATGAAGTTAGTGCAGCAGGTCATTTGTTTATTTAAAAAGCTTCCATTTGTGGTTGTTGGTTAAAAGGAACAAAGTGGTCAATTGATGGTGATATGGCTTCACCCTACTCGGATATGGATTTTCAAGTTTTCATGACATAAAATATTTATGTTGATTTCGACATTTTCGATCAAATATTTCTATCGGCGGATATTTTGTAAATAAAAAATTCTAGAAGTTATTAAATTAATAATCAAG

Coding sequence (CDS)

ATGGCGAGAGATAGCTGTTTGGCTCGAGTTACTGCCGGAGTTGCCGTTGGTGGCGCTGTAGGCGGAGCCGTCGTTCCGAGTTCTGGTTATGGTTTGATTGTTGTTCCGCTTCTTCGGTTATTGAGTAGTTATATGTATGGGATGTGTTGGATTAAAGAGTTTGACATAAGCAGGAAGCTGGATAATTGGTCAAGTTGCGTTCTTGCATCTGTGATTGAACCATGTGCTGTTTATGGGACCTATGAGGCAATTAGATTTAAGGTGCCAGGACTTTTGAAAATTAGGTATATTGGACAAACAACACTTGGAAGTGCTGCCATATTTGGCCTTTTCTTAGGTGCAGGGAGTTTGATACATTGTGGAAAGTCATATTAA

Protein sequence

MARDSCLARVTAGVAVGGAVGGAVVPSSGYGLIVVPLLRLLSSYMYGMCWIKEFDISRKLDNWSSCVLASVIEPCAVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
BLAST of ClCG02G022950 vs. TrEMBL
Match: A0A0A0KIA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G432800 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.7e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 26  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

BLAST of ClCG02G022950 vs. TrEMBL
Match: A0A0A0KIA0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G432800 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-03
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1

Query: 1  MARDSCLARVTAGVAVGGAVGGAV 25
          MARDSCLARVTAGVAVGGAVGGAV
Sbjct: 1  MARDSCLARVTAGVAVGGAVGGAV 24


HSP 2 Score: 101.3 bits (251), Expect = 8.8e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEA+RFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 26  AVYGTYEAVRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

BLAST of ClCG02G022950 vs. TrEMBL
Match: A0A0V0GIY8_SOLCH (Putative reactive oxygen species modulator 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.9e-03
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1

Query: 1  MARDSCLARVTAGVAVGGAVGGAV 25
          MARDSCLARVTAGVA+GGAVGGAV
Sbjct: 1  MARDSCLARVTAGVAIGGAVGGAV 24


HSP 2 Score: 101.3 bits (251), Expect = 8.8e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEA+RFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 26  AVYGTYEAVRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

BLAST of ClCG02G022950 vs. TrEMBL
Match: M1D379_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031241 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.9e-03
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1

Query: 1  MARDSCLARVTAGVAVGGAVGGAV 25
          MARDSCLARVTAGVA+GGAVGGAV
Sbjct: 1  MARDSCLARVTAGVAIGGAVGGAV 24


HSP 2 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 27  AVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 75

BLAST of ClCG02G022950 vs. TrEMBL
Match: A0A067DQ24_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035048mg PE=4 SV=1)

HSP 1 Score: 42.0 bits (97), Expect = 6.3e-01
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 1

Query: 1  MARD-SCLARVTAGVAVGGAVGGAV 25
          MAR+ SCLARVT GVAVGGAVGGAV
Sbjct: 1  MARETSCLARVTTGVAVGGAVGGAV 25


HSP 2 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 27  AVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 75

BLAST of ClCG02G022950 vs. TAIR10
Match: AT3G07910.1 (AT3G07910.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 90.5 bits (223), Expect = 7.8e-19
Identity = 43/49 (87.76%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEAIR KVPGL K+R+IGQTTL SAAIFGLFLGAGSLIHCGK Y
Sbjct: 26  AVYGTYEAIRVKVPGLHKVRFIGQTTLSSAAIFGLFLGAGSLIHCGKGY 74


HSP 2 Score: 43.9 bits (102), Expect = 8.4e-05
Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 1

Query: 1  MARDSCLARVTAGVAVGGAVGGAV 25
          MA++SCLA++TAGVAVGGA+GGAV
Sbjct: 1  MAKNSCLAKITAGVAVGGALGGAV 24

BLAST of ClCG02G022950 vs. NCBI nr
Match: gi|659097517|ref|XP_008449669.1| (PREDICTED: uncharacterized protein LOC103491480 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 9.6e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 26  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

BLAST of ClCG02G022950 vs. NCBI nr
Match: gi|659097517|ref|XP_008449669.1| (PREDICTED: uncharacterized protein LOC103491480 [Cucumis melo])

HSP 1 Score: 49.7 bits (117), Expect = 4.3e-03
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1

Query: 1  MARDSCLARVTAGVAVGGAVGGAV 25
          MARDSCLARVTAGVAVGGAVGGAV
Sbjct: 1  MARDSCLARVTAGVAVGGAVGGAV 24


HSP 2 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEA+RFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 26  AVYGTYEAVRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

BLAST of ClCG02G022950 vs. NCBI nr
Match: gi|565393293|ref|XP_006362315.1| (PREDICTED: reactive oxygen species modulator 1-like [Solanum tuberosum])

HSP 1 Score: 49.3 bits (116), Expect = 5.7e-03
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1

Query: 1  MARDSCLARVTAGVAVGGAVGGAV 25
          MARDSCLARVTAGVA+GGAVGGAV
Sbjct: 1  MARDSCLARVTAGVAIGGAVGGAV 24


HSP 2 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 26  AVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

BLAST of ClCG02G022950 vs. NCBI nr
Match: gi|703068831|ref|XP_010088342.1| (hypothetical protein L484_000906 [Morus notabilis])

HSP 1 Score: 41.2 bits (95), Expect = 1.5e+00
Identity = 19/24 (79.17%), Postives = 20/24 (83.33%), Query Frame = 1

Query: 1  MARDSCLARVTAGVAVGGAVGGAV 25
          M  DSC+ RV AGVAVGGAVGGAV
Sbjct: 1  MGGDSCMTRVAAGVAVGGAVGGAV 24


HSP 2 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 26  AVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

BLAST of ClCG02G022950 vs. NCBI nr
Match: gi|823244924|ref|XP_012455136.1| (PREDICTED: reactive oxygen species modulator 1-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 49.7 bits (117), Expect = 4.3e-03
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1

Query: 1  MARDSCLARVTAGVAVGGAVGGAV 25
          MARDSCLARVTAGVAVGGAVGGAV
Sbjct: 1  MARDSCLARVTAGVAVGGAVGGAV 24


HSP 2 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1

Query: 76  AVYGTYEAIRFKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 125
           AVYGTYEAIR+KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 26  AVYGTYEAIRYKVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KIA0_CUCSA6.7e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G432800 PE=4 SV=1[more]
A0A0A0KIA0_CUCSA3.0e-03100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G432800 PE=4 SV=1[more]
A0A0V0GIY8_SOLCH3.9e-0395.83Putative reactive oxygen species modulator 1-like OS=Solanum chacoense PE=4 SV=1[more]
M1D379_SOLTU3.9e-0395.83Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031241 PE=4 SV=1[more]
A0A067DQ24_CITSI6.3e-0188.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035048mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G07910.17.8e-1987.76 FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
gi|659097517|ref|XP_008449669.1|9.6e-19100.00PREDICTED: uncharacterized protein LOC103491480 [Cucumis melo][more]
gi|659097517|ref|XP_008449669.1|4.3e-03100.00PREDICTED: uncharacterized protein LOC103491480 [Cucumis melo][more]
gi|565393293|ref|XP_006362315.1|5.7e-0395.83PREDICTED: reactive oxygen species modulator 1-like [Solanum tuberosum][more]
gi|703068831|ref|XP_010088342.1|1.5e+0079.17hypothetical protein L484_000906 [Morus notabilis][more]
gi|823244924|ref|XP_012455136.1|4.3e-03100.00PREDICTED: reactive oxygen species modulator 1-like isoform X2 [Gossypium raimon... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018450Romo1/Mgr2
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G022950.1ClCG02G022950.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018450Romo1/Mgr2PFAMPF10247Romo1coord: 75..120
score: 6.4
IPR018450Romo1/Mgr2SMARTSM01378Romo1_2coord: 4..120
score: 4.5
NoneNo IPR availablePANTHERPTHR28525FAMILY NOT NAMEDcoord: 75..124
score: 3.5

The following gene(s) are paralogous to this gene:

None