Carg06717 (gene) Silver-seed gourd

Overview
NameCarg06717
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_012 : 563309 .. 565018 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTGAATCCAAAACCGCTACTGAGGAAGTTAAGATTGATCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAGATTAATGAAGGTTCGGTTTATGATCTTTCTACCTTCTTTCTTAATTCCTTCAGGTTCTTCACTACTGGCTCCACACTTCCAGCGTATATTATTTTTCATACATGGTTTCCCGATGTGCAAATAATAATGGTCTGGGTGTGATTTTGATTGATAAATTGTGGTCTTGGTCCAATGGGTTCTTTATTTCCAAATCTAGTTTTTAAATTCAAATAAAGGGGGAGAGAGATAGAGAGAGGCAAAATCCTTTTGCTGTTTAACAATTTCTAATCGTTGTAGACTCAAATGGTGGATATGCATTGATCTTGATCTACTCTCAAGAAAAGAACTAGAAATTCATGTTGAGAGGCTCCCACTTTTATAGATGGAAATGCGGGTGAGGAAGCATTTTTTGTGGCTTGATTGGAAAATTTTGATGGGCAATACATCTGTGCTTTGAGGGAAAGAGATTAGAGGCATAAGGCCATGGATAAGACCAGGGTTGAACCATCATTTTTCATGGTTTGCAGTTGATCCGTTCCATTATGTTTTACAACGTGGTTAGAGTCGATGATTATCAATTGGAATGAAAGGTACTTCCATATTCCGGGAGCAATAAGATATCTTAAAATTAAGCATCCAAATCATATGCCTGGTCACTTGATGATGACATCTCATCTAGTTCTTGGACTCTTGAATTCTACTTATCCTTAAACAGAAAAAGCTAGAGTCATGTGGAAATGTTGGAGTTGTTTATAGATACATAGCATTGTGAATAATTGTGCTCGAGATGGCTATGTTTGTCTCTTGATCCGTATATATTAAGTCCTTGTACATGTCCATTTTGCTCGATATCTCCAGTTAATTTTTCTCCAAATTTTTAAACTCCACATAGATGTGTCATTGCTGGTGCCTTGGACTCTCGCTTGTGGCTTAGTAAGCTCATATGTTCTGCTCATTTCATTTTCACAATTAGAACATTACATGTCTTGAGCTCTTGAAGGATGTATGTGCTGAAGTTGCTGACTAACGTGTAGTGTCTTGATAATAAAATTGCTTTGTAAAGGTTGGAAGTGATCTATAGGCATGCTAACGTGAATAGATTGTTTCGAGTACCTTCATCACTTAAGAACAAAGTGGTTAGATACAGAAAGAGACAGAGCTTCTCGTCCGGGCACTTACTTTTTATCGGTTCTGGTTGTTAGTTACTGGGTTGATTATCATACAAGTGAAGCACTGTGATACTCTCTGATATGTGTCTAGTCCTAGTAAATCGATTCTAATCACAAGTAACTTGAGCTCATTCCTCAGAGACCTCTCTCTTAGATGCTGATGTCGAGCTTGTTACTCGCAGCTTCTTGTTCATCCTCTCTCTCCCTCACTGATTAAAAAAAAAAAAAAAACGAATCTGCTTCTTGATCTTTATGGGTTTGATAGAAATTTGGTTCCAATAGATATGCCAATCTAAGCATTCTGTTATCGTAGACATTTCTGATGTTATTAATGATCATGTCAATGACAGAGTGGGAAGTCAAAGAAGAAGGGAAGGAAATTACTCAGCAGTGGGAAGACGACTGGGATGACGATGATGTCAACGACGACTTCTCGTTGCAGCTTAGGAGAGAATTGGAGAGCTATACCGAGAAGAAATGA

mRNA sequence

ATGGCGACTGAATCCAAAACCGCTACTGAGGAAGTTAAGATTGATCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAGATTAATGAAGAGTGGGAAGTCAAAGAAGAAGGGAAGGAAATTACTCAGCAGTGGGAAGACGACTGGGATGACGATGATGTCAACGACGACTTCTCGTTGCAGCTTAGGAGAGAATTGGAGAGCTATACCGAGAAGAAATGA

Coding sequence (CDS)

ATGGCGACTGAATCCAAAACCGCTACTGAGGAAGTTAAGATTGATCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAGATTAATGAAGAGTGGGAAGTCAAAGAAGAAGGGAAGGAAATTACTCAGCAGTGGGAAGACGACTGGGATGACGATGATGTCAACGACGACTTCTCGTTGCAGCTTAGGAGAGAATTGGAGAGCTATACCGAGAAGAAATGA

Protein sequence

MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESYTEKK
Homology
[Close]
BLAST of Carg06717 vs. NCBI nr
Match: XP_022954951.1 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata])

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MATESKTATEEVKIDLFEDDDEXXXXXXXXXXXXXXXXXXITXXXXXXXXXXXXXXXXXL 60
          MATESKTATEEVKIDLFEDDDEXXXXXXXXXXXXXXXXXXITXXXXXXXXXXXXXXXXXL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEXXXXXXXXXXXXXXXXXXITXXXXXXXXXXXXXXXXXL 60

Query: 61 QLRRELESYTEKK 74
          QLRRELESYTEKK
Sbjct: 61 QLRRELESYTEKK 73

The following BLAST results are available for this feature:
BLAST of Carg06717 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022954951.12.8e-06100.00protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata][more]
BLAST of Carg06717 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg06717 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg06717 vs. TrEMBL
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0008541proteasome regulatory particle, lid subcomplex
Vocabulary: Biological Process
TermDefinition
GO:0006406mRNA export from nucleus
GO:0043248proteasome assembly
Vocabulary: INTERPRO
TermDefinition
IPR007834DSS1_SEM1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0043248 proteasome assembly
cellular_component GO:0008541 proteasome regulatory particle, lid subcomplex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06717-RACarg06717-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..53
NoneNo IPR availablePANTHERPTHR16771:SF5PROTEIN DELETION OF SUV3 SUPPRESSOR 1 I -RELATEDcoord: 1..73
IPR007834DSS1/SEM1SMARTSM01385DSS1_SEM1_2coord: 9..68
e-value: 8.1E-23
score: 91.8
IPR007834DSS1/SEM1PFAMPF05160DSS1_SEM1coord: 10..67
e-value: 8.4E-18
score: 64.1
IPR007834DSS1/SEM1PANTHERPTHR1677126 PROTEASOME COMPLEX SUBUNIT DSS1coord: 1..73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06717Csa1G046000Cucumber (Chinese Long) v2carcuB0523
Carg06717MELO3C002254Melon (DHL92) v3.5.1carmeB0499
Carg06717ClCG01G013030Watermelon (Charleston Gray)carwcgB0477
Carg06717CSPI01G08400Wild cucumber (PI 183967)carcpiB0531
Carg06717Cucsa.098340Cucumber (Gy14) v1carcgyB0567
Carg06717CmaCh18G001580Cucurbita maxima (Rimu)carcmaB0692
Carg06717CmoCh18G001230Cucurbita moschata (Rifu)carcmoB0673
Carg06717CmoCh13G009240Cucurbita moschata (Rifu)carcmoB0671
Carg06717CsGy1G008290Cucumber (Gy14) v2carcgybB0500
Carg06717CsaV3_1G008390Cucumber (Chinese Long) v3carcucB0529
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06717Watermelon (Charleston Gray)carwcgB0482
Carg06717Watermelon (97103) v1carwmB0490
Carg06717Watermelon (97103) v1carwmB0494
Carg06717Watermelon (97103) v2carwmbB0519
Carg06717Watermelon (97103) v2carwmbB0520
Carg06717Watermelon (97103) v2carwmbB0522
Carg06717Wax gourdcarwgoB0597
Carg06717Wax gourdcarwgoB0601
Carg06717Wax gourdcarwgoB0605
Carg06717Silver-seed gourdcarcarB300
Carg06717Silver-seed gourdcarcarB389
Carg06717Silver-seed gourdcarcarB482
Carg06717Silver-seed gourdcarcarB478
Carg06717Cucumber (Gy14) v2carcgybB0501
Carg06717Cucumber (Gy14) v1carcgyB0570
Carg06717Cucurbita maxima (Rimu)carcmaB0686
Carg06717Cucurbita maxima (Rimu)carcmaB0688
Carg06717Cucurbita maxima (Rimu)carcmaB0690
Carg06717Cucurbita moschata (Rifu)carcmoB0667
Carg06717Cucurbita moschata (Rifu)carcmoB0669
Carg06717Cucurbita pepo (Zucchini)carcpeB0694
Carg06717Cucurbita pepo (Zucchini)carcpeB0695
Carg06717Cucurbita pepo (Zucchini)carcpeB0696
Carg06717Cucurbita pepo (Zucchini)carcpeB0699
Carg06717Wild cucumber (PI 183967)carcpiB0532
Carg06717Cucumber (Chinese Long) v2carcuB0524
Carg06717Cucumber (Chinese Long) v3carcucB0530
Carg06717Bottle gourd (USVL1VR-Ls)carlsiB447
Carg06717Bottle gourd (USVL1VR-Ls)carlsiB448
Carg06717Melon (DHL92) v3.5.1carmeB0500
Carg06717Melon (DHL92) v3.6.1carmedB0504
Carg06717Melon (DHL92) v3.6.1carmedB0505