Csa1G046000 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G046000
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR007834 (DSS1/SEM1)
Location	Chr1 : 5240986 .. 5243421 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTTTAAGTGAAGATTTCAAGATTCGAACTCCCAACCGCAGCCTCAGCGCTTTGATCTCATAATTAGGGCTAAAAATTTCATTTGCAAAATTCTTCAGCTGGCTCGTCTTCTTACTCATCTCCCCGACTCTTCCCTATTACCTAATTCGACCCAGGTAATCTTCTCCACTGTTCTTCTCTCAAATCTAAATCGATTTACATTCTTCAAATTTTACGATTTCTTTGGGTTTAGATCTGCATTATATTATGGAGTTCTTCAGTAATTTTATTCAATATGTTTTGCTAATTCAATCTCTTTATCCCACAATTCATCGCTTCCTGATTTTTTTTTATCTTTGGTTTTAATGCGAACTCGTTTTTGAGTTTCTGCGAAAAATATCTGTGGTTTGGTTTCTTGCTTGATTGGGATCTTAGATTGGAAAAGCTAGGGTTTCACTACATTTTAATTTCTATTACTAATTCGTCATTTAGAATGCAGTACAATATGACTTCTGGTTATTTTTCATTTTTTATTAACGTGATTGTTGCTGATTTTTATTGAATACGACATCTGTAGACTTAAAATTTTTCATGGCGACTGAATCCAAGACTGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAAATTAATGAAGGTACAATTTACTGTTATTCATTTGGGAAAAAAAACCATCCCCTTATTTGGACTTATTCACTACTGTTTACAGTGTATACTTGTTTTTCATTTATGGTTGGCCGATGTGGATTACTTGCTTGATGTTGCATACAAAATAATGGAAATAAAATAAGGGTCTTCATAGTCTTGTTACTTGCCTTGGCGACAAATATGATCTGCTATAACAGCAATATTATTCTCTAGTTTCGATCAGCATACTCTAAGTTTTTATTGTTCTCTCAGGATTATCATTTTATATTATTTCCATCTGATACAATTATAATCACCCATACCTTATAATGAGATGGACTTGCATTCTCTACTATTAAACCGATCAATTAAAGAAACTATTAGTTAGAGAAAAAAGATGTGAGAGTTACATGCCTTTTGGCTTCCGAGGAATGTCCTCACTATCTTTGGGGGTTGGCATTCCCCTGGGCCCTGTTAGGATTTGAGAAGTCTTTATCTTAGAACTCAAGGACAAAGTCATATTTTGTTCAAGTAAGCACATTGGAAAGTCTTATCTATTAAAGATTTTATGATATTTGGAACGAGACCCATAAATTGAGAAGTCTTTATAATATTAGTGTGTGCTAAAAAATACTAGGAGTTATTTTTTTGCTAACATGAGCAGTTGAGCTGACATGTACTTGTACTATCAATCTAGAGTTTTGAGGTTTGGCCCCCCACCCCACATATTATAAGAGAAAATAAAGTAAAAATAGTAGGGGTATGAGTTTTGGTTGAATATAAGGACATTGGAGGGATGATATTGGTGGAACAAAGTGTAGGAGAAAGAGACAATCTTTTTGCAGTTCAACCATTTTGAATTGCTGTAAATCAAATGGCCGATATGCATTGATCTTGATACATTTAGGGAAGAAGTAGAAGTTTCTGTTAAGTAGTTCCCCACTTTTACAGGTGAGGGTGAAAAAGCATGCTCTGCTACTTGATTTGAATCCTCCTATGAGCAATGCAACAGTGTTTTTAGGAAGGAAATTAGAGTCCTGTGGCAAAGGATAAGGATTTTCTTGTCTAATCTGCCACAATCTAAACCTTTCTTCTTCTTTCAGAATATATGTTGATGTCTTGAAGTGATGTACTATTAGCACAATAACACCGATGGATCCATTTTTTTGATATCTTTCCCACTGAAAGATCAACTCATAAATGGTAGAACAGCATGACACTCTGATATATGTGTAATCCTAGAAAATCGGTTATTGTCAGTATTTGTTTCTCGTGGCTTCTTCTTCTTTCCCCCCGTTATAGAAATTTTGAGAAATTTGGTTCCAGAGGGGTCATAATCTAATCTGAAACACTCCGTTATCATAGACACTTCTAATATTGTTATGAATGACCACATCAACTGTGCAGAGTGGGAAATGAAAGAAGAAGGCAAAGAAATTACACAGCAGTGGGAAGACGACTGGGATGATGACGATGTCAACGACGACTTCTCTCTGCAGCTTAGAAGAGAATTGGAGAGCAATACCGAGAAGAAATGAGAAGACTTTTTTTTAGTGTCTTGAATGTTTTTATCTTCTAAGATGTATGTTTAAGTTAGGTCTTTTGACCCCATTGTGATTTTACGCCGTCTTATATCCTTGTAAATGGTGGTATTATGAACATACTTAGTAGCCTCAAACATCGTTTTACCTTTTCAGATCAGATGATTGGAAATTTGTGAAACGTTTTGCTCTGAAGAAAACACTGATTATTGTTGTAGCATCTTCTTCTTTTTATTTATTTT

mRNA sequence

ATGGCGACTGAATCCAAGACTGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAAATTAATGAAGAGTGGGAAATGAAAGAAGAAGGCAAAGAAATTACACAGCAGTGGGAAGACGACTGGGATGATGACGATGTCAACGACGACTTCTCTCTGCAGCTTAGAAGAGAATTGGAGAGCAATACCGAGAAGAAATGA

Coding sequence (CDS)

ATGGCGACTGAATCCAAGACTGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAAATTAATGAAGAGTGGGAAATGAAAGAAGAAGGCAAAGAAATTACACAGCAGTGGGAAGACGACTGGGATGATGACGATGTCAACGACGACTTCTCTCTGCAGCTTAGAAGAGAATTGGAGAGCAATACCGAGAAGAAATGA

Protein sequence

MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK*

Homology

[Close]

BLAST of Csa1G046000 vs. Swiss-Prot
Match: SEM11_ARATH (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.8e-27
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 1  MATESKTATEEV-KIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFS 60
          MA E K AT EV K+DLFEDDDEFEEFEINE+W  KEE KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLRRELESNTEKK 74
           QLR+ELE+ T+KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of Csa1G046000 vs. Swiss-Prot
Match: SEM12_ARATH (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-25
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E K A E VK+DLFEDDDEFEEFEINE+W  KEE KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLRRELESNTEKK 74
          QL++ELE+ +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of Csa1G046000 vs. Swiss-Prot
Match: DSS1_BOVIN (26S proteasome complex subunit DSS1 OS=Bos taurus GN=SHFM1 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-09
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 10 EEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESN 69
          + V + L E+DDEFEEF   E+W   +E ++    WED+WDDD+V DDFS QLR ELE +
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDED-AHVWEDNWDDDNVEDDFSNQLRAELEKH 65

Query: 70 TEK 73
            K
Sbjct: 66 GYK 66

[Close]

BLAST of Csa1G046000 vs. Swiss-Prot
Match: DSS1_HUMAN (26S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-09
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 10 EEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESN 69
          + V + L E+DDEFEEF   E+W   +E ++    WED+WDDD+V DDFS QLR ELE +
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDED-AHVWEDNWDDDNVEDDFSNQLRAELEKH 65

Query: 70 TEK 73
            K
Sbjct: 66 GYK 66

[Close]

BLAST of Csa1G046000 vs. Swiss-Prot
Match: DSS1_MOUSE (26S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-09
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 10 EEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESN 69
          + V + L E+DDEFEEF   E+W   +E ++    WED+WDDD+V DDFS QLR ELE +
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDED-AHVWEDNWDDDNVEDDFSNQLRAELEKH 65

Query: 70 TEK 73
            K
Sbjct: 66 GYK 66

[Close]

BLAST of Csa1G046000 vs. TrEMBL
Match: A0A0A0LU33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.2e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESNTEKK 74
          QLRRELESNTEKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of Csa1G046000 vs. TrEMBL
Match: C6T0E4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.0e-31
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNTEK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of Csa1G046000 vs. TrEMBL
Match: A0A0B2P900_GLYSO (Putative 26S proteasome complex subunit sem1-1 OS=Glycine soja GN=glysoja_044941 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.0e-31
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNTEK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of Csa1G046000 vs. TrEMBL
Match: A0A151TZF9_CAJCA (Putative 26S proteasome complex subunit sem1-1 OS=Cajanus cajan GN=KK1_004962 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-30
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNT+K
Sbjct: 61 QLRRELESNTDK 72

[Close]

BLAST of Csa1G046000 vs. TrEMBL
Match: V7CVA2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G059000g PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-30
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNT+K
Sbjct: 61 QLRRELESNTDK 72

[Close]

BLAST of Csa1G046000 vs. TAIR10
Match: AT5G45010.1 (AT5G45010.1 DSS1 homolog on chromosome V)

HSP 1 Score: 116.3 bits (290), Expect = 7.9e-27
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E K A E VK+DLFEDDDEFEEFEINE+W  KEE KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLRRELESNTEKK 74
          QL++ELE+ +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of Csa1G046000 vs. TAIR10
Match: AT1G64750.3 (AT1G64750.3 deletion of SUV3 suppressor 1(I))

HSP 1 Score: 100.1 bits (248), Expect = 5.9e-22
Identity = 57/115 (49.57%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 1   MATESKTATEEV-KIDLFEDDDEFEEFEINE----------------------------- 60
           MA E K AT EV K+DLFEDDDEFEEFEINE                             
Sbjct: 1   MAAEPKAATAEVVKMDLFEDDDEFEEFEINEVDSSDLTSSCIERIDKDGLVYELSRSDMK 60

Query: 61  ------------EWEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 74
                       +W  KEE KE++QQWEDDWDDDDVNDDFS QLR+ELE+ T+KK
Sbjct: 61  TNLFDVNFRCEIDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 115

[Close]

BLAST of Csa1G046000 vs. NCBI nr
Match: gi|449469525|ref|XP_004152470.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 7.5e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESNTEKK 74
          QLRRELESNTEKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of Csa1G046000 vs. NCBI nr
Match: gi|356508661|ref|XP_003523073.1| (PREDICTED: probable 26S proteasome complex subunit sem1-2 [Glycine max])

HSP 1 Score: 141.0 bits (354), Expect = 8.5e-31
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNTEK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of Csa1G046000 vs. NCBI nr
Match: gi|703122731|ref|XP_010102642.1| (hypothetical protein L484_010934 [Morus notabilis])

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-30
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATEE KIDLFEDDDEFEEFEIN+EWE KEEGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEEAKIDLFEDDDEFEEFEINQEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESNTEKK 74
          QLRRELE+N +KK
Sbjct: 61 QLRRELENNQDKK 73

[Close]

BLAST of Csa1G046000 vs. NCBI nr
Match: gi|593796542|ref|XP_007161309.1| (hypothetical protein PHAVU_001G059000g [Phaseolus vulgaris])

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-30
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNT+K
Sbjct: 61 QLRRELESNTDK 72

[Close]

BLAST of Csa1G046000 vs. NCBI nr
Match: gi|802652384|ref|XP_012080089.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Jatropha curcas])

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-30
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VK+DLFEDDDEFEEFEINEEWE KEEGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEDVKMDLFEDDDEFEEFEINEEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELE +TEK
Sbjct: 61 QLRRELEKSTEK 72

The following BLAST results are available for this feature:

BLAST of Csa1G046000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEM11_ARATH	9.8e-27	77.03	Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1...	[more]
SEM12_ARATH	1.4e-25	72.60	Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=...	[more]
DSS1_BOVIN	1.1e-09	50.79	26S proteasome complex subunit DSS1 OS=Bos taurus GN=SHFM1 PE=3 SV=1	[more]
DSS1_HUMAN	1.1e-09	50.79	26S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1	[more]
DSS1_MOUSE	1.1e-09	50.79	26S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1	[more]

BLAST of Csa1G046000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU33_CUCSA	5.2e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1	[more]
C6T0E4_SOYBN	6.0e-31	90.28	Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1	[more]
A0A0B2P900_GLYSO	6.0e-31	90.28	Putative 26S proteasome complex subunit sem1-1 OS=Glycine soja GN=glysoja_044941...	[more]
A0A151TZF9_CAJCA	1.3e-30	88.89	Putative 26S proteasome complex subunit sem1-1 OS=Cajanus cajan GN=KK1_004962 PE...	[more]
V7CVA2_PHAVU	1.3e-30	88.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G059000g PE=4 SV=1	[more]

BLAST of Csa1G046000 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45010.1	7.9e-27	72.60	DSS1 homolog on chromosome V	[more]
AT1G64750.3	5.9e-22	49.57	deletion of SUV3 suppressor 1(I)	[more]

BLAST of Csa1G046000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469525\|ref\|XP_004152470.1\|	7.5e-35	100.00	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus]	[more]
gi\|356508661\|ref\|XP_003523073.1\|	8.5e-31	90.28	PREDICTED: probable 26S proteasome complex subunit sem1-2 [Glycine max]	[more]
gi\|703122731\|ref\|XP_010102642.1\|	1.9e-30	87.67	hypothetical protein L484_010934 [Morus notabilis]	[more]
gi\|593796542\|ref\|XP_007161309.1\|	1.9e-30	88.89	hypothetical protein PHAVU_001G059000g [Phaseolus vulgaris]	[more]
gi\|802652384\|ref\|XP_012080089.1\|	2.5e-30	88.89	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007834	DSS1_SEM1

Vocabulary: **Cellular Component**
Term	Definition
GO:0008541	proteasome regulatory particle, lid subcomplex

Vocabulary: **Biological Process**
Term	Definition
GO:0006406	mRNA export from nucleus
GO:0043248	proteasome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU107586	cucumber EST collection version 3.0	transcribed_cluster
CU143275	cucumber EST collection version 3.0	transcribed_cluster
CU159693	cucumber EST collection version 3.0	transcribed_cluster
CU162311	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G046000.1	Csa1G046000.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU107586	CU107586	transcribed_cluster
CU159693	CU159693	transcribed_cluster
CU143275	CU143275	transcribed_cluster
CU162311	CU162311	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 10..67 score: 4.3
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 9..68 score: 2.0
None	No IPR available	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..72 score: 2.1
None	No IPR available	PANTHER	PTHR16771:SF1	SUBFAMILY NOT NAMED	coord: 1..72 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G046000	Carg06717	Silver-seed gourd	carcuB0523

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G046000	Watermelon (97103) v2	cuwmbB001
Csa1G046000	Watermelon (97103) v2	cuwmbB017
Csa1G046000	Watermelon (97103) v2	cuwmbB072
Csa1G046000	Watermelon (97103) v2	cuwmbB088
Csa1G046000	Wax gourd	cuwgoB002
Csa1G046000	Wax gourd	cuwgoB030
Csa1G046000	Wax gourd	cuwgoB086
Csa1G046000	Cucumber (Chinese Long) v2	cucuB001
Csa1G046000	Cucumber (Chinese Long) v2	cucuB017
Csa1G046000	Cucumber (Gy14) v1	cgycuB106
Csa1G046000	Cucumber (Gy14) v1	cgycuB301
Csa1G046000	Cucurbita maxima (Rimu)	cmacuB066
Csa1G046000	Cucurbita maxima (Rimu)	cmacuB107
Csa1G046000	Cucurbita maxima (Rimu)	cmacuB217
Csa1G046000	Cucurbita maxima (Rimu)	cmacuB233
Csa1G046000	Cucurbita maxima (Rimu)	cmacuB390
Csa1G046000	Cucurbita moschata (Rifu)	cmocuB057
Csa1G046000	Cucurbita moschata (Rifu)	cmocuB093
Csa1G046000	Cucurbita moschata (Rifu)	cmocuB202
Csa1G046000	Cucurbita moschata (Rifu)	cmocuB219
Csa1G046000	Cucurbita moschata (Rifu)	cmocuB380
Csa1G046000	Melon (DHL92) v3.5.1	cumeB005
Csa1G046000	Melon (DHL92) v3.5.1	cumeB027
Csa1G046000	Melon (DHL92) v3.5.1	cumeB046
Csa1G046000	Melon (DHL92) v3.5.1	cumeB067
Csa1G046000	Watermelon (Charleston Gray)	cuwcgB001
Csa1G046000	Watermelon (Charleston Gray)	cuwcgB013
Csa1G046000	Watermelon (Charleston Gray)	cuwcgB073
Csa1G046000	Watermelon (97103) v1	cuwmB006
Csa1G046000	Watermelon (97103) v1	cuwmB000
Csa1G046000	Watermelon (97103) v1	cuwmB041
Csa1G046000	Watermelon (97103) v1	cuwmB086
Csa1G046000	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G046000	Cucurbita pepo (Zucchini)	cpecuB358
Csa1G046000	Cucurbita pepo (Zucchini)	cpecuB505
Csa1G046000	Cucurbita pepo (Zucchini)	cpecuB595
Csa1G046000	Cucurbita pepo (Zucchini)	cpecuB642
Csa1G046000	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G046000	Bottle gourd (USVL1VR-Ls)	culsiB028
Csa1G046000	Bottle gourd (USVL1VR-Ls)	culsiB064
Csa1G046000	Cucumber (Gy14) v2	cgybcuB001
Csa1G046000	Cucumber (Gy14) v2	cgybcuB010
Csa1G046000	Melon (DHL92) v3.6.1	cumedB022
Csa1G046000	Melon (DHL92) v3.6.1	cumedB000
Csa1G046000	Melon (DHL92) v3.6.1	cumedB039
Csa1G046000	Melon (DHL92) v3.6.1	cumedB062
Csa1G046000	Silver-seed gourd	carcuB0285
Csa1G046000	Silver-seed gourd	carcuB0392
Csa1G046000	Silver-seed gourd	carcuB0640
Csa1G046000	Silver-seed gourd	carcuB1019