CSPI01G08400 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G08400
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	26 proteasome complex subunit DSS1, putative
Location	Chr1 : 5274069 .. 5276540 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAAAGTAAATGGAAAATATTTTAAGTGAAGATTTCACGATTCGAACTCCCAACCGCAGCCTCGGCGCTTTGATCTCATAATTAGGGCTAAAAATTTCATTTGCAAAATTCTTCAGCTGGCTCGTCTTCTTACTCATCTCCCCGACTCTTCCCTATTACCTAATTCGACCCAGGTAATCTTCTCCACTGTTCTTCTCTCAAATCTAAATCGATTTACATTCTTCAAATTTTACGATTTCTTTGGGTTTAGATCTGCATTATATTATGGAGTTCTTCAGTAATTTTATTCAATATGTTTTGCTAATTCAATCTCTTTATCCCACAATTCATCACTTCCTGATCTTTTTTTCATCTTTGGTTTTAATGCGAACTCGTTTTTGAGTTTCTGCGAAAAATATCTGTGGTTTGGTTTCTTGCTTGATTGGGATCTTAGATTGGAAAAGCTAGGGTTTCACTACATTTTAATTTCTATTATTAATTCGTCATTTAGAATGCAGTACAATATGACTTCTGGTTATTTTTCATTTTTTATTAACGTGATTGTTGCTGATTTTTATTGAATACGACATCTGTAGACTTAAAATTTTTCATGGCGACTGAATCCAAGACTGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAAATTAATGAAGGTACAATTTACTGTTAATCATTTGGGAAAAAAAACCATCCCCTTATTTGGACTTATTCACTACTGTTTACAGTGTATACTTGTTTTTCATTTATGGTTGGCCGATGTGGATTACTTGCTTGATGTTGCATACAAAATAATGGAAATAAAATAAGGGTCTTCATAGTCTTGTTACTTGCCTTGGCGACAAATATGATCTGCTATAACAGCAATATTATTCTCTAGTTTCGATCAGCATACTCTAAGTTTTTATTGTTCTCTCATGATTATCATTTTATATTATTTCCATCTGATACAATTATAATCACCCATACCTTATAATGAGATGGACTTGCATTCTCTACTATTACACCGATCAATTAAAGAAACTATTAGTTAGAGAAAAAAGATGTGAGAGTTACATGCCTTTTGGCTTCCGAGGAATGTCCTCACTATCTTTGGGGGTTGGCATTCCCCTGGGCCCTGTTAGGATTTGAGAAGTCTTTATCTTAGAACTCAAGGACAAAGTCATATTTTGTTCAAGTAAGCACATTGGAAAGTCTTATCTATTAAAGATTTTATGATATTTGGAACGAGACCCATAAATTGAGAAGTCTTTATAATATTAGTGTGCGCTAAAAAATACTAGGAGTTATTTTTTTGCTAACATGAGCAGTTGAGCTGACATGTACTTGTACTATCAATCTAGAGTTTTGAGGTTTGGCCCCCCACCCCACATATTATAAGAGAAAATAAAGTAAAAATAGTAGGGGTATGAGTTTTGGTTGAATATAAGGAAATTGGAGGGATGATATTGGTGGAACAAAGTGTAGGAGAAAGAGACAATCTTTTTGCAGTTCAACCATTTTGAATTGCTGTAAATCAAATGGCCGATATGCATTGATCTTGATACATTTAGGGAAGAAGTAGAAGTTTCTGTTAAGTAGTTCCCCACTTTTACAGGTGAGGGTGAAAAAGCATGCTCTGCTACTTGATTTGAATCCTCCTATGAACAATGCAACAGTGTTTTTTGGAAGGAAATTAGAGTCCTGTGGCAAAGGATAAGGATTTTCTTGTCTAATCTGCCACAATCTAAACCTTTCTTCTTCTTTCAGAATATATGTTGATGTCTTGAAGTGATGTACTATTAGCACAATAACACCGATGGATCCATTTTTTTGATATCTTTCCCACTGAAAGATCAACTCATAAATGGTAGAACAGCATGACACTCTGATATATGTGTAATCCTAGAAATTCGGTTATTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACTTCTTTTTCTTCATGGTTTTAGAAATTTTGAGAAATTTGGTTCCAGAGGGGTCCTAATTTAATCTAAAACACTCCGTTATCATAGACACTTCTAATATTGTTATGAATGACCACATCAACTGTGCAGAGTGGGAAATGAAAGAAGAAGGCAAAGAAATTACACAGCAGTGGGAAGACGACTGGGATGATGACGATGTCAACGACGACTTCTCTCTGCAGCTTAGAAGAGAATTGGAGAGCAATACCGAGAAGAAATGAGAAGACTTTTTTTTAGTGTCTTGAATGTTTTTATCTTCTAAGATGTATGTTTAAGTTATGTCTTTTGACCCCATTGTGATTTTACGCCGTCTTATATCCTTGTAAATGGTGGTATTATGAACATACTTAGTAGCCTCAAACATGTTTTACCTTTTCAGATCAGATGATTGGAAATTTGTGAAACGTTTTGCTCTGAAGAAAACACTGATTATTGTTGTAGCATCTTCT

mRNA sequence

ATGGCGACTGAATCCAAGACTGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAAATTAATGAAGAGTGGGAAATGAAAGAAGAAGGCAAAGAAATTACACAGCAGTGGGAAGACGACTGGGATGATGACGATGTCAACGACGACTTCTCTCTGCAGCTTAGAAGAGAATTGGAGAGCAATACCGAGAAGAAATGA

Coding sequence (CDS)

ATGGCGACTGAATCCAAGACTGCGACTGAGGAAGTTAAGATTGACCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAAATTAATGAAGAGTGGGAAATGAAAGAAGAAGGCAAAGAAATTACACAGCAGTGGGAAGACGACTGGGATGATGACGATGTCAACGACGACTTCTCTCTGCAGCTTAGAAGAGAATTGGAGAGCAATACCGAGAAGAAATGA

Homology

[Close]

BLAST of CSPI01G08400 vs. Swiss-Prot
Match: SEM11_ARATH (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-22
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1  MATESKTATEEV-KIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFS 60
          MA E K AT EV K+DLFEDDDEFEEFEINE+W  KEE KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLRRELESNTEKK 74
           QLR+ELE+ T+KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of CSPI01G08400 vs. Swiss-Prot
Match: SEM12_ARATH (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.8e-21
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E K A E VK+DLFEDDDEFEEFEINE+W  KEE KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLRRELESNTEKK 74
          QL++ELE+ +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CSPI01G08400 vs. Swiss-Prot
Match: SEM1_DICDI (Probable 26S proteasome complex subunit sem1 OS=Dictyostelium discoideum GN=DDB_G0287633 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.5e-06
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 4  ESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSLQLR 63
          +++   +E  +++ EDD EFEEFE N    M E      +QWEDDWD D ++DDFS QLR
Sbjct: 11 KAEVKPKEDNVEVIEDD-EFEEFEDN----MAEGEDNSKEQWEDDWDTDKIDDDFSKQLR 70

Query: 64 RELESNTEKK 74
           E+ES++  K
Sbjct: 71 AEIESHSTMK 75

[Close]

BLAST of CSPI01G08400 vs. TrEMBL
Match: A0A0A0LU33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-30
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESNTEKK 74
          QLRRELESNTEKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of CSPI01G08400 vs. TrEMBL
Match: A0A0B2P900_GLYSO (Putative 26S proteasome complex subunit sem1-1 OS=Glycine soja GN=glysoja_044941 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-26
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNTEK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of CSPI01G08400 vs. TrEMBL
Match: C6T0E4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-26
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNTEK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of CSPI01G08400 vs. TrEMBL
Match: V7CVA2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G059000g PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-26
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNT+K
Sbjct: 61 QLRRELESNTDK 72

[Close]

BLAST of CSPI01G08400 vs. TrEMBL
Match: A0A151TZF9_CAJCA (Putative 26S proteasome complex subunit sem1-1 OS=Cajanus cajan GN=KK1_004962 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-26
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNT+K
Sbjct: 61 QLRRELESNTDK 72

[Close]

BLAST of CSPI01G08400 vs. TAIR10
Match: AT5G45010.1 (AT5G45010.1 DSS1 homolog on chromosome V)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-22
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E K A E VK+DLFEDDDEFEEFEINE+W  KEE KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLRRELESNTEKK 74
          QL++ELE+ +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CSPI01G08400 vs. TAIR10
Match: AT1G64750.3 (AT1G64750.3 deletion of SUV3 suppressor 1(I))

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-17
Identity = 57/115 (49.57%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 1   MATESKTATEEV-KIDLFEDDDEFEEFEINE----------------------------- 60
           MA E K AT EV K+DLFEDDDEFEEFEINE                             
Sbjct: 1   MAAEPKAATAEVVKMDLFEDDDEFEEFEINEVDSSDLTSSCIERIDKDGLVYELSRSDMK 60

Query: 61  ------------EWEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 74
                       +W  KEE KE++QQWEDDWDDDDVNDDFS QLR+ELE+ T+KK
Sbjct: 61  TNLFDVNFRCEIDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 115

[Close]

BLAST of CSPI01G08400 vs. NCBI nr
Match: gi|449469525|ref|XP_004152470.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-30
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESNTEKK 74
          QLRRELESNTEKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of CSPI01G08400 vs. NCBI nr
Match: gi|356508661|ref|XP_003523073.1| (PREDICTED: probable 26S proteasome complex subunit sem1-2 [Glycine max])

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-26
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNTEK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of CSPI01G08400 vs. NCBI nr
Match: gi|703122731|ref|XP_010102642.1| (hypothetical protein L484_010934 [Morus notabilis])

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-26
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATEE KIDLFEDDDEFEEFEIN+EWE KEEGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEEAKIDLFEDDDEFEEFEINQEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESNTEKK 74
          QLRRELE+N +KK
Sbjct: 61 QLRRELENNQDKK 73

[Close]

BLAST of CSPI01G08400 vs. NCBI nr
Match: gi|593796542|ref|XP_007161309.1| (hypothetical protein PHAVU_001G059000g [Phaseolus vulgaris])

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-26
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELESNT+K
Sbjct: 61 QLRRELESNTDK 72

[Close]

BLAST of CSPI01G08400 vs. NCBI nr
Match: gi|802652384|ref|XP_012080089.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Jatropha curcas])

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-26
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VK+DLFEDDDEFEEFEINEEWE KEEGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEDVKMDLFEDDDEFEEFEINEEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESNTEK 73
          QLRRELE +TEK
Sbjct: 61 QLRRELEKSTEK 72

The following BLAST results are available for this feature:

BLAST of CSPI01G08400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEM11_ARATH	1.9e-22	77.03	Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1...	[more]
SEM12_ARATH	2.8e-21	72.60	Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=...	[more]
SEM1_DICDI	9.5e-06	45.71	Probable 26S proteasome complex subunit sem1 OS=Dictyostelium discoideum GN=DDB_...	[more]

BLAST of CSPI01G08400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU33_CUCSA	1.0e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1	[more]
A0A0B2P900_GLYSO	1.2e-26	90.28	Putative 26S proteasome complex subunit sem1-1 OS=Glycine soja GN=glysoja_044941...	[more]
C6T0E4_SOYBN	1.2e-26	90.28	Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1	[more]
V7CVA2_PHAVU	2.6e-26	88.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G059000g PE=4 SV=1	[more]
A0A151TZF9_CAJCA	2.6e-26	88.89	Putative 26S proteasome complex subunit sem1-1 OS=Cajanus cajan GN=KK1_004962 PE...	[more]

BLAST of CSPI01G08400 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45010.1	1.6e-22	72.60	DSS1 homolog on chromosome V	[more]
AT1G64750.3	1.2e-17	49.57	deletion of SUV3 suppressor 1(I)	[more]

BLAST of CSPI01G08400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469525\|ref\|XP_004152470.1\|	1.5e-30	100.00	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus]	[more]
gi\|356508661\|ref\|XP_003523073.1\|	1.7e-26	90.28	PREDICTED: probable 26S proteasome complex subunit sem1-2 [Glycine max]	[more]
gi\|703122731\|ref\|XP_010102642.1\|	3.7e-26	87.67	hypothetical protein L484_010934 [Morus notabilis]	[more]
gi\|593796542\|ref\|XP_007161309.1\|	3.7e-26	88.89	hypothetical protein PHAVU_001G059000g [Phaseolus vulgaris]	[more]
gi\|802652384\|ref\|XP_012080089.1\|	4.9e-26	88.89	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007834	DSS1_SEM1

Vocabulary: **Cellular Component**
Term	Definition
GO:0008541	proteasome regulatory particle, lid subcomplex

Vocabulary: **Biological Process**
Term	Definition
GO:0006406	mRNA export from nucleus
GO:0043248	proteasome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G08400.1	CSPI01G08400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 10..67 score: 4.3
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 9..68 score: 2.0
None	No IPR available	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..72 score: 2.1
None	No IPR available	PANTHER	PTHR16771:SF1	SUBFAMILY NOT NAMED	coord: 1..72 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G08400	CsaV3_1G008390	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G08400	Carg06717	Silver-seed gourd	carcpiB0531

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G08400	Silver-seed gourd	carcpiB0288
CSPI01G08400	Silver-seed gourd	carcpiB0397
CSPI01G08400	Silver-seed gourd	carcpiB0647
CSPI01G08400	Silver-seed gourd	carcpiB0654
CSPI01G08400	Silver-seed gourd	carcpiB1043
CSPI01G08400	Cucumber (Chinese Long) v3	cpicucB012
CSPI01G08400	Cucumber (Chinese Long) v3	cpicucB029
CSPI01G08400	Cucumber (Chinese Long) v3	cpicucB048
CSPI01G08400	Cucumber (Chinese Long) v3	cpicucB050
CSPI01G08400	Watermelon (97103) v2	cpiwmbB000
CSPI01G08400	Watermelon (97103) v2	cpiwmbB017
CSPI01G08400	Watermelon (97103) v2	cpiwmbB059
CSPI01G08400	Watermelon (97103) v2	cpiwmbB072
CSPI01G08400	Watermelon (97103) v2	cpiwmbB089
CSPI01G08400	Wax gourd	cpiwgoB003
CSPI01G08400	Wax gourd	cpiwgoB030
CSPI01G08400	Wax gourd	cpiwgoB069
CSPI01G08400	Wax gourd	cpiwgoB088
CSPI01G08400	Cucurbita maxima (Rimu)	cmacpiB394
CSPI01G08400	Wild cucumber (PI 183967)	cpicpiB002
CSPI01G08400	Wild cucumber (PI 183967)	cpicpiB035
CSPI01G08400	Wild cucumber (PI 183967)	cpicpiB037
CSPI01G08400	Cucurbita pepo (Zucchini)	cpecpiB025
CSPI01G08400	Cucumber (Gy14) v1	cgycpiB107
CSPI01G08400	Cucumber (Gy14) v1	cgycpiB294
CSPI01G08400	Cucumber (Gy14) v1	cgycpiB312
CSPI01G08400	Cucumber (Gy14) v1	cgycpiB425
CSPI01G08400	Cucurbita maxima (Rimu)	cmacpiB063
CSPI01G08400	Cucurbita maxima (Rimu)	cmacpiB103
CSPI01G08400	Cucurbita maxima (Rimu)	cmacpiB218
CSPI01G08400	Cucurbita maxima (Rimu)	cmacpiB235
CSPI01G08400	Cucurbita maxima (Rimu)	cmacpiB410
CSPI01G08400	Cucurbita moschata (Rifu)	cmocpiB056
CSPI01G08400	Cucurbita moschata (Rifu)	cmocpiB095
CSPI01G08400	Cucurbita moschata (Rifu)	cmocpiB204
CSPI01G08400	Cucurbita moschata (Rifu)	cmocpiB222
CSPI01G08400	Cucurbita moschata (Rifu)	cmocpiB383
CSPI01G08400	Cucurbita moschata (Rifu)	cmocpiB398
CSPI01G08400	Cucurbita moschata (Rifu)	cmocpiB690
CSPI01G08400	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G08400	Cucumber (Chinese Long) v2	cpicuB007
CSPI01G08400	Cucumber (Chinese Long) v2	cpicuB042
CSPI01G08400	Melon (DHL92) v3.5.1	cpimeB000
CSPI01G08400	Melon (DHL92) v3.5.1	cpimeB002
CSPI01G08400	Melon (DHL92) v3.5.1	cpimeB024
CSPI01G08400	Melon (DHL92) v3.5.1	cpimeB047
CSPI01G08400	Melon (DHL92) v3.5.1	cpimeB068
CSPI01G08400	Watermelon (Charleston Gray)	cpiwcgB006
CSPI01G08400	Watermelon (Charleston Gray)	cpiwcgB015
CSPI01G08400	Watermelon (Charleston Gray)	cpiwcgB063
CSPI01G08400	Watermelon (Charleston Gray)	cpiwcgB075
CSPI01G08400	Watermelon (97103) v1	cpiwmB000
CSPI01G08400	Watermelon (97103) v1	cpiwmB006
CSPI01G08400	Watermelon (97103) v1	cpiwmB036
CSPI01G08400	Watermelon (97103) v1	cpiwmB042
CSPI01G08400	Watermelon (97103) v1	cpiwmB091
CSPI01G08400	Cucurbita pepo (Zucchini)	cpecpiB357
CSPI01G08400	Cucurbita pepo (Zucchini)	cpecpiB505
CSPI01G08400	Cucurbita pepo (Zucchini)	cpecpiB596
CSPI01G08400	Cucurbita pepo (Zucchini)	cpecpiB645
CSPI01G08400	Bottle gourd (USVL1VR-Ls)	cpilsiB021
CSPI01G08400	Bottle gourd (USVL1VR-Ls)	cpilsiB028
CSPI01G08400	Bottle gourd (USVL1VR-Ls)	cpilsiB050
CSPI01G08400	Bottle gourd (USVL1VR-Ls)	cpilsiB066
CSPI01G08400	Melon (DHL92) v3.6.1	cpimedB000
CSPI01G08400	Melon (DHL92) v3.6.1	cpimedB003
CSPI01G08400	Melon (DHL92) v3.6.1	cpimedB023
CSPI01G08400	Melon (DHL92) v3.6.1	cpimedB041
CSPI01G08400	Melon (DHL92) v3.6.1	cpimedB060
CSPI01G08400	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G08400	Cucumber (Gy14) v2	cgybcpiB009
CSPI01G08400	Cucumber (Gy14) v2	cgybcpiB205