CmoCh18G001230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G001230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr18 : 860443 .. 864213 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAAATAGAGAATTTTGGGACAAGTAATTGAAAAATAAATAAATAAAGCAAATGGAAATAGCTGGATTCGAACACAAGAACGCGACGCAGATTGGGTTACGAGTTACGACCTGATAGTTAGGGCTAAATATCCATCCGCTCAATCAGCAGATTTCTTCAGCTGGTTCAGTTTTTTTTTTACTCTCTCGAGTCTTCCACTAGCATTCTGTCTTGCGTCCACCTCCTAGTAGAACGAAGGTAATGATCTTTACTGTTCATCTTTAAAATCTACATTCTTTCAATTTTGCGATTTTTTTTTGTTTAGATCTAGAATTTTCTCTGGAGTTCTTGGGTAATTTTATTCGCAGTCGCATATTTCAGTTCGGATGTACTGGTTCGATGTGTTTTGCTATTTCCATCTCTTTATCCCACTTATGAACGAAGAAGAATTCGATTTTTCATGATTTTTGTTGATCTTTGATGATATCGATACATGCTCTTGTGAGATTCTGCAAAATACGTGACAAATAAGACATTCATTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACTATTGGTTCCTTGTGTGATTCGCATCTTACATTGGAAAAAATTAGGTTCTGTAGGTTTCACTTTGTTATTTTAATGCGAGTTCTTCATTTATAACCTGGCGTCTGATTTATAAATCTTGTTTTTTAATGATTAATGGGATTTATTACTGATTTTTGTTGAATTCTACATCCTTATACAGTTCAAACTTTGTGATGGCGACTGAATCCAAAACCGCTACTGAGGAAGTTAAGATTGATCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAGATTAATGAAGGTTCGGTTTATTATCTTTCTACCTTCTTTCTTAATTCCTTCAGGTTCTTCACTACTGGTTCCACACTTCCAGCGTATATTATTTTTCATACATGGTTTCCCGACGTGCAATTAATAATGGTCTGGGTGTGATTTTGATTGATAAATTGTGGTCTTGGTCCAATGGGTTCTTTATTTCCAAATCTAGTTTTTAAATTCAAATAAAGGGGGAGAGAGATAGAGAGAGGCAAAGTCCTTTTGCTGTTTAATAATTTCTAATCGTAGTAGACTCAAATGGTGGATATGCATTGATCTTGATCTACTCTCAAGAAAAGAAGTAGAAATTCATGTTGAGAGGCTCCCACTTTTATAGATGGAAATGCGGGTGAGGAAGCATTTTTTGTGGCTTGATTGGAAAATTTTGATGGGCAATACATCTGTGCTTTGAGGGAAAGAGATTAGAGGCATAAGGCCATGGATAAGACCAGGGTTGAACCATCATTTTTCATGGTTTGCAGTTGATCCGTTCCATTATGTTTTACAACGTGGTTAGAGTCGATGATTATCAATTGGAATGTAGTTAAAGGTACTTCCATATTCCGGGAGCAATAAGATATCTTAAAATTAAGCATCCAAATCATATGCCTGGTCACTTGATGATGACATCTCATCTAGTTCTTGGACTCTTGAATTCTACTTATCCTTAAACAGAAAAAGCTAGAGTCATGTGGAAATGTTGGAGTTGTTTATAGATACATAGCATTGTGAATAATTGTGCTCGAGATGGCTATGTTTGTCTCTTGATCCGTATATATTAAGTCCTTGTACGTTTCCATTTTGCTCGATATCTCCAGTTAATTTTTCTCCAAATTTTTAAACTCCACATAGATGTGTCATTGCTGGTGCCTTGGACTCTCGCTTGTGCCTTATAAGCTCATATGTTCTGCTCATTTCATTTTCACAATTAGAACATTACATGTCTTGAGCTCTTGAAGGATGTATGTGCTGAAGTTGCTGACTAACGTGTAGTGTCTTGATAATAAAATTGCTTTGTAAAGGTTGGAAGTGATCTATAGGCATGCTAACGTGAATAGATTGTTTCGAGTGCCTTCATCACTTAAGAACAAAGTGGTTAGATACAGAAAGAGACAGAGCTTCTCATCCGGCCCTTACTTTTTATCGGTTCTGGTTGTTAGTTACTGGGTTGATTATCATACAAGTGAAGCACTGTGATACTCTCTGATATGCGTCTAGTCCTAGTAAATCGATTCTAATCACAAGTAACTTGAGCTCATTCCTCAGAGACCTCTCTCTTAGATGCTGATGTCGAGCTTGTTACTCGCAGCTTCTTGTTCATCCTCTCTCTCCCTCACTGATAAAAAAAAAACGAATCTGCTTCTTGATCTTTATGGGTTTGATAGAAATTTGGTTCCAATAGATATACCAATCTAAGCATTCTGTTATCGTAGACATTTCTGATGTTATTAATGATCATGTCAATGACAGAGTGGGAAGTCAAAGAAGAAGGGAAGGAAATTACTCAGCAGTGGGAAGACGACTGGGATGACGATGATGTCAACGACGACTTCTCGTTGCAGCTTAGGAGAGAATTGGAGAGCTATACCGAGAAGAAATGAGAAGAAGTTTTGTCCTTAAATGTTTTCATCTTCAAGATCTCATGTTTTAACCAGGTCTTTTGATCCCATGTACATGATGGTATTATGAAACATTCTTAGGAGCCTAAAACATTGTTACCTTTCACATCAGAACATTGGAAAATCGAGACGTTTGGCACCGAAGAAAACTTCGTTTTCTTGTTGGCACGGAACATGATCTTCGTTCACGAATCTTGCTATGGTTTGCTTGAGATTTATAAGATGTTTCGTTCTGAATATTGGCAGGAATAGAAAACTAAGTTTGTTGTGGGTTTGTTCATTACGTGGTGGTGCATTTTTATTGTTTTCCTTCAAAGAACACATGATGTGTGGACCAATTCTTTGAGGAACAACAGATTTGAAATCCTTCCTTCCTTCTTTGGGTCTAGACCTGCATATGTCTGTGTATAACTGGTATCTACACCTTCGATGTGCGTGACCATCGACAACCACGG

mRNA sequence

AAAATAAATAGAGAATTTTGGGACAAGTAATTGAAAAATAAATAAATAAAGCAAATGGAAATAGCTGGATTCGAACACAAGAACGCGACGCAGATTGGGTTACGAGTTACGACCTGATAGTTAGGGCTAAATATCCATCCGCTCAATCAGCAGATTTCTTCAGCTGGTTCAGTTTTTTTTTTACTCTCTCGAGTCTTCCACTAGCATTCTGTCTTGCGTCCACCTCCTAGTAGAACGAAGTTCAAACTTTGTGATGGCGACTGAATCCAAAACCGCTACTGAGGAAGTTAAGATTGATCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAGATTAATGAAGAGTGGGAAGTCAAAGAAGAAGGGAAGGAAATTACTCAGCAGTGGGAAGACGACTGGGATGACGATGATGTCAACGACGACTTCTCGTTGCAGCTTAGGAGAGAATTGGAGAGCTATACCGAGAAGAAATGAGAAGAAGTTTTGTCCTTAAATGTTTTCATCTTCAAGATCTCATGTTTTAACCAGGTCTTTTGATCCCATGTACATGATGGTATTATGAAACATTCTTAGGAGCCTAAAACATTGTTACCTTTCACATCAGAACATTGGAAAATCGAGACGTTTGGCACCGAAGAAAACTTCGTTTTCTTGTTGGCACGGAACATGATCTTCGTTCACGAATCTTGCTATGGTTTGCTTGAGATTTATAAGATGTTTCGTTCTGAATATTGGCAGGAATAGAAAACTAAGTTTGTTGTGGGTTTGTTCATTACGTGGTGGTGCATTTTTATTGTTTTCCTTCAAAGAACACATGATGTGTGGACCAATTCTTTGAGGAACAACAGATTTGAAATCCTTCCTTCCTTCTTTGGGTCTAGACCTGCATATGTCTGTGTATAACTGGTATCTACACCTTCGATGTGCGTGACCATCGACAACCACGG

Coding sequence (CDS)

ATGGCGACTGAATCCAAAACCGCTACTGAGGAAGTTAAGATTGATCTCTTTGAAGATGATGATGAGTTTGAAGAGTTTGAGATTAATGAAGAGTGGGAAGTCAAAGAAGAAGGGAAGGAAATTACTCAGCAGTGGGAAGACGACTGGGATGACGATGATGTCAACGACGACTTCTCGTTGCAGCTTAGGAGAGAATTGGAGAGCTATACCGAGAAGAAATGA

Homology

[Close]

BLAST of CmoCh18G001230 vs. Swiss-Prot
Match: SEM11_ARATH (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.2e-22
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1  MATESKTATEEV-KIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFS 60
          MA E K AT EV K+DLFEDDDEFEEFEINE+W  KEE KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLRRELESYTEKK 74
           QLR+ELE+ T+KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of CmoCh18G001230 vs. Swiss-Prot
Match: SEM12_ARATH (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-21
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E K A E VK+DLFEDDDEFEEFEINE+W  KEE KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLRRELESYTEKK 74
          QL++ELE+ +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CmoCh18G001230 vs. TrEMBL
Match: A0A0A0LU33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-29
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATESKTATEEVKIDLFEDDDEFEEFEINEEWE+KEEGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESYTEKK 74
          QLRRELES TEKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of CmoCh18G001230 vs. TrEMBL
Match: A0A067K7X0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11494 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.4e-26
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VK+DLFEDDDEFEEFEINEEWE KEEGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEDVKMDLFEDDDEFEEFEINEEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESYTEK 73
          QLRRELE  TEK
Sbjct: 61 QLRRELEKSTEK 72

[Close]

BLAST of CmoCh18G001230 vs. TrEMBL
Match: C6T0E4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.7e-26
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESYTEK 73
          QLRRELES TEK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of CmoCh18G001230 vs. TrEMBL
Match: A0A0B2P900_GLYSO (Putative 26S proteasome complex subunit sem1-1 OS=Glycine soja GN=glysoja_044941 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.7e-26
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESYTEK 73
          QLRRELES TEK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of CmoCh18G001230 vs. TrEMBL
Match: A0A151TZF9_CAJCA (Putative 26S proteasome complex subunit sem1-1 OS=Cajanus cajan GN=KK1_004962 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-25
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESYTEK 73
          QLRRELES T+K
Sbjct: 61 QLRRELESNTDK 72

[Close]

BLAST of CmoCh18G001230 vs. TAIR10
Match: AT5G45010.1 (AT5G45010.1 DSS1 homolog on chromosome V)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-22
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E K A E VK+DLFEDDDEFEEFEINE+W  KEE KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLRRELESYTEKK 74
          QL++ELE+ +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CmoCh18G001230 vs. TAIR10
Match: AT1G64750.3 (AT1G64750.3 deletion of SUV3 suppressor 1(I))

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-17
Identity = 57/115 (49.57%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 1   MATESKTATEEV-KIDLFEDDDEFEEFEINE----------------------------- 60
           MA E K AT EV K+DLFEDDDEFEEFEINE                             
Sbjct: 1   MAAEPKAATAEVVKMDLFEDDDEFEEFEINEVDSSDLTSSCIERIDKDGLVYELSRSDMK 60

Query: 61  ------------EWEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESYTEKK 74
                       +W  KEE KE++QQWEDDWDDDDVNDDFS QLR+ELE+ T+KK
Sbjct: 61  TNLFDVNFRCEIDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 115

[Close]

BLAST of CmoCh18G001230 vs. NCBI nr
Match: gi|449469525|ref|XP_004152470.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-29
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATESKTATEEVKIDLFEDDDEFEEFEINEEWE+KEEGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESYTEKK 74
          QLRRELES TEKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]

BLAST of CmoCh18G001230 vs. NCBI nr
Match: gi|802652384|ref|XP_012080089.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Jatropha curcas])

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VK+DLFEDDDEFEEFEINEEWE KEEGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEDVKMDLFEDDDEFEEFEINEEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESYTEK 73
          QLRRELE  TEK
Sbjct: 61 QLRRELEKSTEK 72

[Close]

BLAST of CmoCh18G001230 vs. NCBI nr
Match: gi|356508661|ref|XP_003523073.1| (PREDICTED: probable 26S proteasome complex subunit sem1-2 [Glycine max])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESYTEK 73
          QLRRELES TEK
Sbjct: 61 QLRRELESNTEK 72

[Close]

BLAST of CmoCh18G001230 vs. NCBI nr
Match: gi|703122731|ref|XP_010102642.1| (hypothetical protein L484_010934 [Morus notabilis])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-25
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATEE KIDLFEDDDEFEEFEIN+EWE KEEGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEEAKIDLFEDDDEFEEFEINQEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLRRELESYTEKK 74
          QLRRELE+  +KK
Sbjct: 61 QLRRELENNQDKK 73

[Close]

BLAST of CmoCh18G001230 vs. NCBI nr
Match: gi|593796542|ref|XP_007161309.1| (hypothetical protein PHAVU_001G059000g [Phaseolus vulgaris])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-25
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEVKEEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K ATE+VKIDLFEDDDEFEEFEINEEW+ KEEGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLRRELESYTEK 73
          QLRRELES T+K
Sbjct: 61 QLRRELESNTDK 72

The following BLAST results are available for this feature:

BLAST of CmoCh18G001230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SEM11_ARATH	4.2e-22	77.03	Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1...	[more]
SEM12_ARATH	2.7e-21	72.60	Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=...	[more]

BLAST of CmoCh18G001230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU33_CUCSA	2.5e-29	97.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1	[more]
A0A067K7X0_JATCU	7.4e-26	88.89	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11494 PE=4 SV=1	[more]
C6T0E4_SOYBN	9.7e-26	88.89	Uncharacterized protein OS=Glycine max GN=GLYMA_04G181200 PE=2 SV=1	[more]
A0A0B2P900_GLYSO	9.7e-26	88.89	Putative 26S proteasome complex subunit sem1-1 OS=Glycine soja GN=glysoja_044941...	[more]
A0A151TZF9_CAJCA	2.2e-25	87.50	Putative 26S proteasome complex subunit sem1-1 OS=Cajanus cajan GN=KK1_004962 PE...	[more]

BLAST of CmoCh18G001230 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45010.1	1.5e-22	72.60	DSS1 homolog on chromosome V	[more]
AT1G64750.3	2.5e-17	49.57	deletion of SUV3 suppressor 1(I)	[more]

BLAST of CmoCh18G001230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469525\|ref\|XP_004152470.1\|	3.5e-29	97.26	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus]	[more]
gi\|802652384\|ref\|XP_012080089.1\|	1.1e-25	88.89	PREDICTED: probable 26S proteasome complex subunit sem1-1 [Jatropha curcas]	[more]
gi\|356508661\|ref\|XP_003523073.1\|	1.4e-25	88.89	PREDICTED: probable 26S proteasome complex subunit sem1-2 [Glycine max]	[more]
gi\|703122731\|ref\|XP_010102642.1\|	3.1e-25	86.30	hypothetical protein L484_010934 [Morus notabilis]	[more]
gi\|593796542\|ref\|XP_007161309.1\|	3.1e-25	87.50	hypothetical protein PHAVU_001G059000g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007834	DSS1_SEM1

Vocabulary: **Cellular Component**
Term	Definition
GO:0008541	proteasome regulatory particle, lid subcomplex

Vocabulary: **Biological Process**
Term	Definition
GO:0006406	mRNA export from nucleus
GO:0043248	proteasome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G001230.1	CmoCh18G001230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 10..67 score: 4.9
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 9..68 score: 8.1
None	No IPR available	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..72 score: 5.6
None	No IPR available	PANTHER	PTHR16771:SF1	SUBFAMILY NOT NAMED	coord: 1..72 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G001230	CsaV3_1G008390	Cucumber (Chinese Long) v3	cmocucB0457
CmoCh18G001230	Carg06717	Silver-seed gourd	carcmoB0673

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G001230	Wax gourd	cmowgoB0517
CmoCh18G001230	Wax gourd	cmowgoB0547
CmoCh18G001230	Cucurbita moschata (Rifu)	cmocmoB065
CmoCh18G001230	Cucurbita moschata (Rifu)	cmocmoB101
CmoCh18G001230	Cucurbita moschata (Rifu)	cmocmoB171
CmoCh18G001230	Cucumber (Gy14) v1	cgycmoB0206
CmoCh18G001230	Cucumber (Gy14) v1	cgycmoB0588
CmoCh18G001230	Cucurbita maxima (Rimu)	cmacmoB089
CmoCh18G001230	Cucurbita maxima (Rimu)	cmacmoB138
CmoCh18G001230	Cucurbita maxima (Rimu)	cmacmoB219
CmoCh18G001230	Cucurbita maxima (Rimu)	cmacmoB224
CmoCh18G001230	Cucurbita maxima (Rimu)	cmacmoB408
CmoCh18G001230	Wild cucumber (PI 183967)	cmocpiB383
CmoCh18G001230	Wild cucumber (PI 183967)	cmocpiB393
CmoCh18G001230	Cucumber (Chinese Long) v2	cmocuB380
CmoCh18G001230	Cucumber (Chinese Long) v2	cmocuB390
CmoCh18G001230	Melon (DHL92) v3.5.1	cmomeB356
CmoCh18G001230	Melon (DHL92) v3.5.1	cmomeB362
CmoCh18G001230	Watermelon (Charleston Gray)	cmowcgB365
CmoCh18G001230	Watermelon (97103) v1	cmowmB371
CmoCh18G001230	Watermelon (97103) v1	cmowmB397
CmoCh18G001230	Cucurbita pepo (Zucchini)	cmocpeB377
CmoCh18G001230	Cucurbita pepo (Zucchini)	cmocpeB388
CmoCh18G001230	Cucurbita pepo (Zucchini)	cmocpeB404
CmoCh18G001230	Cucurbita pepo (Zucchini)	cmocpeB410
CmoCh18G001230	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G001230	Bottle gourd (USVL1VR-Ls)	cmolsiB375
CmoCh18G001230	Cucumber (Gy14) v2	cgybcmoB082
CmoCh18G001230	Cucumber (Gy14) v2	cgybcmoB093
CmoCh18G001230	Melon (DHL92) v3.6.1	cmomedB408
CmoCh18G001230	Melon (DHL92) v3.6.1	cmomedB413
CmoCh18G001230	Silver-seed gourd	carcmoB0499
CmoCh18G001230	Silver-seed gourd	carcmoB0841
CmoCh18G001230	Silver-seed gourd	carcmoB1351
CmoCh18G001230	Cucumber (Chinese Long) v3	cmocucB0468
CmoCh18G001230	Watermelon (97103) v2	cmowmbB412