Carg05752 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05752
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_033 : 803825 .. 804220 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACATTACCAGAACCAGTACAGCGCACAATCCGGCGCCGACCAGTACGGCAACCCAATTCGCCAGACCGATGAATACGGCAACGTCATTTCCGACACCGCCCAGCAGGGCGACCCTCTTCGCCGGACCGATGAATTCCGTGGGACCGACCAGTATGGCAACCCGATTCATCGGACCGATCAGCACGGTGTCGGTGACCCAACTGGACGCACTACTGGCACTGGAATGTACGAAGGGCAGCAGCAGCAGCAGAGGGGTGGAATGTTTCATCATGATAAGCCGGTATCGACGGGGGGATCGGTCGGGTACACGACGGCGGAGCAGGGGGAGCGTCATGAGAAGAAAGGGATGATGGAGAAGATTAAGGAGAAGCTGCCGGGAGGGAACCAATAG

mRNA sequence

ATGGCACATTACCAGAACCAGTACAGCGCACAATCCGGCGCCGACCAGTACGGCAACCCAATTCGCCAGACCGATGAATACGGCAACGTCATTTCCGACACCGCCCAGCAGGGCGACCCTCTTCGCCGGACCGATGAATTCCGTGGGACCGACCAGTATGGCAACCCGATTCATCGGACCGATCAGCACGGTGTCGGTGACCCAACTGGACGCACTACTGGCACTGGAATGTACGAAGGGCAGCAGCAGCAGCAGAGGGGTGGAATGTTTCATCATGATAAGCCGGTATCGACGGGGGGATCGGTCGGGTACACGACGGCGGAGCAGGGGGAGCGTCATGAGAAGAAAGGGATGATGGAGAAGATTAAGGAGAAGCTGCCGGGAGGGAACCAATAG

Coding sequence (CDS)

ATGGCACATTACCAGAACCAGTACAGCGCACAATCCGGCGCCGACCAGTACGGCAACCCAATTCGCCAGACCGATGAATACGGCAACGTCATTTCCGACACCGCCCAGCAGGGCGACCCTCTTCGCCGGACCGATGAATTCCGTGGGACCGACCAGTATGGCAACCCGATTCATCGGACCGATCAGCACGGTGTCGGTGACCCAACTGGACGCACTACTGGCACTGGAATGTACGAAGGGCAGCAGCAGCAGCAGAGGGGTGGAATGTTTCATCATGATAAGCCGGTATCGACGGGGGGATCGGTCGGGTACACGACGGCGGAGCAGGGGGAGCGTCATGAGAAGAAAGGGATGATGGAGAAGATTAAGGAGAAGCTGCCGGGAGGGAACCAATAG

Protein sequence

MAHYQNQYSAQSGADQYGNPIRQTDEYGNVISDTAQQGDPLRRTDEFRGTDQYGNPIHRTDQHGVGDPTGRTTGTGMYEGQQQQQRGGMFHHDKPVSTGGSVGYTTAEQGERHEKKGMMEKIKEKLPGGNQ

Homology

[Close]

BLAST of Carg05752 vs. NCBI nr
Match: XP_022929430.1 (dehydrin DHN1-like [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 4.5e-31
Identity = 118/133 (88.72%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MAHYQNQYSAQSGADQYGNPIRQTXXXXXXXXXXXXXXXXXXXXXEFRXXXXXXXXXXXX 60
           MAHYQNQYSAQSGADQYGNPIRQTXXXXXXXXXXXXXXXXXXXXX FRXXXXXXXXXXXX
Sbjct: 1   MAHYQNQYSAQSGADQYGNPIRQTXXXXXXXXXXXXXXXXXXXXXXFRXXXXXXXXXXXX 60

Query: 61  XXXXVGDPTGRTTGTGMYEGQ--QQQQRGGMFHHDKPVSTGGSVGYTTAEQGERHEKKGM 120
           XXXXVGDPTGRTTGTGMYEG+             DKPVSTGGSVGYTTAEQGERHEKKGM
Sbjct: 61  XXXXVGDPTGRTTGTGMYEGRXXXXXXXXXXXXXDKPVSTGGSVGYTTAEQGERHEKKGM 120

Query: 121 MEKIKEKLPGGNQ 132
           MEKIKEKLPGGNQ
Sbjct: 121 MEKIKEKLPGGNQ 133

[Close]

BLAST of Carg05752 vs. NCBI nr
Match: XP_023553197.1 (dehydrin DHN3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 103/138 (74.64%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 1   MAHYQNQYSAQSGADQYGNPIRQTXXXXXXXXXXXXXXXXXXXXXEFRXXXXXXXXXXXX 60
           MAHYQNQYSAQSGADQYGNPIRQTXXXXXXXXXXXX         EF XXXXXXXXXXXX
Sbjct: 1   MAHYQNQYSAQSGADQYGNPIRQTXXXXXXXXXXXXHVDPLRRTDEFXXXXXXXXXXXXX 60

Query: 61  XXXXVGDPTGRT---TGTGMYE----GQQQQQRGGMFHHDKPVSTGGSVGYTTAEQGERH 120
           XXXXVGDPTGRT       MYE                 DKPVSTGGSVGYTT EQGERH
Sbjct: 61  XXXXVGDPTGRTGXXXXXXMYEXXXXXXXXXXXXXXXXXDKPVSTGGSVGYTTGEQGERH 120

Query: 121 EKKGMMEKIKEKLPGGNQ 132
           EKKGMMEKIKEKLPGGNQ
Sbjct: 121 EKKGMMEKIKEKLPGGNQ 138

[Close]

BLAST of Carg05752 vs. NCBI nr
Match: XP_022136840.1 (dehydrin DHN1-like [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 8.3e-17
Identity = 84/135 (62.22%), Postives = 87/135 (64.44%), Query Frame = 0


Query: 1   MAHYQNQYSAQSGADQYGNPIRQTXXXXXXXXXXXXXXXXXXXXXEFRXXXXXXXXXXXX 60
           MAHYQN Y  QSG D+YGNPIRQ XXXXXXXXXXXXXXXXXXXXX  R            
Sbjct: 1   MAHYQNPYGVQSGTDEYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXR----------DT 60

Query: 61  XXXXVGDPTGRTTGTGMYEGQQQQQRG-----GMFHHDKPVSTGGSVGYTTAEQGERHEK 120
               VGDP GRT GTG   GQ QQ RG     GMFHHD       + GYT AEQG   EK
Sbjct: 61  DPYGVGDPAGRTAGTG---GQTQQHRGGDQGQGMFHHDS--QRAATTGYTAAEQGGGREK 120

Query: 121 KGMMEKIKEKLPGGN 131
           KGMMEKIKEKLPG +
Sbjct: 121 KGMMEKIKEKLPGAH 120

[Close]

BLAST of Carg05752 vs. NCBI nr
Match: XP_011654339.1 (PREDICTED: late embryogenesis abundant protein D-11-like [Cucumis sativus] >KGN53290.1 hypothetical protein Csa_4G045050 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-08
Identity = 66/131 (50.38%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 1   MAHYQNQYSAQSGADQYGNPIRQTXXXXXXXXXXXXXXXXXXXXXEFRXXXXXXXXXXXX 60
           MAHYQNQYSAQ+G+D+YG PIRQTXXXXXXXXXXXXXXXXXX   +              
Sbjct: 1   MAHYQNQYSAQAGSDEYGYPIRQTXXXXXXXXXXXXXXXXXXRTDDQYPKP--------- 60

Query: 61  XXXXVGDPTGRTTGTGMYEGQQQQQRGGMFHHDKPVSTGGSVGYTTAEQGE-RHEKKGMM 120
                              G +QQQ  G+FH++K V T       T E G   HEKKG++
Sbjct: 61  -----------------IHGSEQQQPSGIFHNEKVVMT------KTREDGSGHHEKKGVI 99

Query: 121 EKIKEKLPGGN 131
           EKIKEKLPGG+
Sbjct: 121 EKIKEKLPGGH 99

[Close]

BLAST of Carg05752 vs. TrEMBL
Match: tr|A0A0A0KUH6|A0A0A0KUH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045050 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 66/131 (50.38%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 1   MAHYQNQYSAQSGADQYGNPIRQTXXXXXXXXXXXXXXXXXXXXXEFRXXXXXXXXXXXX 60
           MAHYQNQYSAQ+G+D+YG PIRQTXXXXXXXXXXXXXXXXXX   +              
Sbjct: 1   MAHYQNQYSAQAGSDEYGYPIRQTXXXXXXXXXXXXXXXXXXRTDDQYPKP--------- 60

Query: 61  XXXXVGDPTGRTTGTGMYEGQQQQQRGGMFHHDKPVSTGGSVGYTTAEQGE-RHEKKGMM 120
                              G +QQQ  G+FH++K V T       T E G   HEKKG++
Sbjct: 61  -----------------IHGSEQQQPSGIFHNEKVVMT------KTREDGSGHHEKKGVI 99

Query: 121 EKIKEKLPGGN 131
           EKIKEKLPGG+
Sbjct: 121 EKIKEKLPGGH 99

The following BLAST results are available for this feature:

BLAST of Carg05752 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929430.1	4.5e-31	88.72	dehydrin DHN1-like [Cucurbita moschata]	[more]
XP_023553197.1	1.1e-24	74.64	dehydrin DHN3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022136840.1	8.3e-17	62.22	dehydrin DHN1-like [Momordica charantia]	[more]
XP_011654339.1	5.4e-08	50.38	PREDICTED: late embryogenesis abundant protein D-11-like [Cucumis sativus] >KGN5...	[more]

BLAST of Carg05752 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg05752 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05752 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUH6\|A0A0A0KUH6_CUCSA	3.6e-08	50.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045050 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009415	response to water
GO:0006950	response to stress

Vocabulary: **INTERPRO**
Term	Definition
IPR030513	Dehydrin_CS
IPR000167	Dehydrin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
biological_process	GO:0009415	response to water
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05752-RA	Carg05752-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 92..129 e-value: 2.8E-8 score: 34.4
IPR000167	Dehydrin	PANTHER	PTHR33346	FAMILY NOT NAMED	coord: 1..107
IPR000167	Dehydrin	PANTHER	PTHR33346	FAMILY NOT NAMED	coord: 97..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..88
None	No IPR available	PANTHER	PTHR33346:SF9	SUBFAMILY NOT NAMED	coord: 1..107
None	No IPR available	PANTHER	PTHR33346:SF9	SUBFAMILY NOT NAMED	coord: 97..130
IPR030513	Dehydrin, conserved site	PROSITE	PS00823	DEHYDRIN_2	coord: 121..128

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05752	Cla014571	Watermelon (97103) v1	carwmB1018
Carg05752	Csa4G045040	Cucumber (Chinese Long) v2	carcuB1033
Carg05752	MELO3C016401	Melon (DHL92) v3.5.1	carmeB0992
Carg05752	ClCG07G008700	Watermelon (Charleston Gray)	carwcgB0999
Carg05752	CSPI04G05310	Wild cucumber (PI 183967)	carcpiB1057
Carg05752	Cucsa.106380	Cucumber (Gy14) v1	carcgyB1133
Carg05752	CmaCh04G007640	Cucurbita maxima (Rimu)	carcmaB1414
Carg05752	CmoCh16G006890	Cucurbita moschata (Rifu)	carcmoB1366
Carg05752	Lsi07G002410	Bottle gourd (USVL1VR-Ls)	carlsiB935
Carg05752	Cp4.1LG01g06900	Cucurbita pepo (Zucchini)	carcpeB1417
Carg05752	CsGy4G005210	Cucumber (Gy14) v2	carcgybB1005
Carg05752	MELO3C016401.2	Melon (DHL92) v3.6.1	carmedB1004
Carg05752	CsaV3_4G005460	Cucumber (Chinese Long) v3	carcucB1063
Carg05752	Cla97C07G135740	Watermelon (97103) v2	carwmbB1084
Carg05752	Bhi01G001874	Wax gourd	carwgoB1193

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05752	Carg14162	Silver-seed gourd	carcarB646

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05752	Silver-seed gourd	carcarB432
Carg05752	Cucumber (Gy14) v2	carcgybB1006
Carg05752	Cucurbita maxima (Rimu)	carcmaB1409
Carg05752	Cucurbita maxima (Rimu)	carcmaB1413
Carg05752	Cucurbita maxima (Rimu)	carcmaB1415
Carg05752	Cucurbita moschata (Rifu)	carcmoB1370
Carg05752	Cucurbita moschata (Rifu)	carcmoB1371
Carg05752	Cucurbita pepo (Zucchini)	carcpeB1412
Carg05752	Cucurbita pepo (Zucchini)	carcpeB1413
Carg05752	Cucurbita pepo (Zucchini)	carcpeB1414
Carg05752	Cucurbita pepo (Zucchini)	carcpeB1418
Carg05752	Cucurbita pepo (Zucchini)	carcpeB1419
Carg05752	Wild cucumber (PI 183967)	carcpiB1058
Carg05752	Cucumber (Chinese Long) v2	carcuB1034
Carg05752	Cucumber (Chinese Long) v3	carcucB1068
Carg05752	Bottle gourd (USVL1VR-Ls)	carlsiB930
Carg05752	Melon (DHL92) v3.5.1	carmeB0994
Carg05752	Melon (DHL92) v3.6.1	carmedB1006
Carg05752	Watermelon (Charleston Gray)	carwcgB0993
Carg05752	Watermelon (97103) v1	carwmB1021
Carg05752	Watermelon (97103) v1	carwmB1022
Carg05752	Watermelon (97103) v2	carwmbB1072
Carg05752	Watermelon (97103) v2	carwmbB1073
Carg05752	Wax gourd	carwgoB1198