CsaV3_4G005460 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G005460
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptiondehydrin DHN1
Locationchr4 : 3635430 .. 3636641 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTCACTTCCAAAACCATGCAATCAACATTCTCAAAACTAATCACTCTTTAAATTGTATTCAGTTCTTTTCGTTGTGTTTCGGTTTCCAAAGAAGTATGGCGCATTACCAATCTGGAAGAACCGATCAGTACGGCAACCCAATTCGCCAGACTGATGAATATGGCAACGTCATCTCCGAGACCGGTCAGTACGGTGACCCCCTTCGTCGGACCGGTGAGTTCCGTGAAACTGACCAGTATGGAAACCCTGGGCGTCGGACTGATGATGTGTTCGGTAACCCAGTTGGAACTGGGACGGGGATGGGGACCGGTGGGACGTATGAGACGACCGGGTACGGTGGGACAGGGTATGGCGGAGGGCACCATCAGCAGCATAAGGAGCATGGTGGCATACTTCATCGCTCTGGAAGCTCCAGTTCTAGCTCCGTAAGTGTATCCTAATCTCATCTTAATCCTTCACAATTCTTTTTAAAAATCTTATTTTAAGATAAAATAGAATTGAAGGAAATTATTTTTTATAACAAAAAGTGATATTTTGGTACATTTTTATTGGAAAAAAAGGATAATCGTCTCTAATAAAATCATCTCTCCCATTTCTTCATCCTATACACCAATAACTTTTTTTTGAAGTGAAACGTACTTGTGTCCTGAGTATTTTTAGTCTTTCTCCTGTGTAGGCTCTACAAGAAGGATTTTAGAATAACATAAAATTAAATTTCTACTTTCAGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAGGAGAAGGTAAAGGAGAAGCTGCCAGGACATCATCGTCATGAAGAGCAAGCAGTGTCAACCACGACACCGGGAGGTTATACGTCGGCGGAGTACGGTGGGCAGCATGAGAAGAAGGGAATAATGGAGAAGATCAAGGAGAAGCTTCCGGGACATCACTGAGAATGACCTACTCGCTGTCCATGTTTGTTTGTTGTTTATATTAATAAAACTACCGCTGTGATCTTAGAAGGGATATCATCGATAAAGTATATATAAAAAGAAGGCTGTTATGTCGTCACATATGATTAAATAATTTTAAGGACTAGCTTGGTTGATGTGTTATGTTTGTGTGTATTATGTATAACTTCTGGTTGTGGTTGAATCAACAATGTTTCTCAATATGTTACTAAGTTTCTGTAGCATCTTTTTTTTGTAGTTATGACTTCTATTTCTTCATT

mRNA sequence

ATGGCGCATTACCAATCTGGAAGAACCGATCAGTACGGCAACCCAATTCGCCAGACTGATGAATATGGCAACGTCATCTCCGAGACCGGTCAGTACGGTGACCCCCTTCGTCGGACCGGTGAGTTCCGTGAAACTGACCAGTATGGAAACCCTGGGCGTCGGACTGATGATGTGTTCGGTAACCCAGTTGGAACTGGGACGGGGATGGGGACCGGTGGGACGTATGAGACGACCGGGTACGGTGGGACAGGGTATGGCGGAGGGCACCATCAGCAGCATAAGGAGCATGGTGGCATACTTCATCGCTCTGGAAGCTCCAGTTCTAGCTCCTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAGGAGAAGGTAAAGGAGAAGCTGCCAGGACATCATCGTCATGAAGAGCAAGCAGTGTCAACCACGACACCGGGAGGTTATACGTCGGCGGAGTACGGTGGGCAGCATGAGAAGAAGGGAATAATGGAGAAGATCAAGGAGAAGCTTCCGGGACATCACTGA

Coding sequence (CDS)

ATGGCGCATTACCAATCTGGAAGAACCGATCAGTACGGCAACCCAATTCGCCAGACTGATGAATATGGCAACGTCATCTCCGAGACCGGTCAGTACGGTGACCCCCTTCGTCGGACCGGTGAGTTCCGTGAAACTGACCAGTATGGAAACCCTGGGCGTCGGACTGATGATGTGTTCGGTAACCCAGTTGGAACTGGGACGGGGATGGGGACCGGTGGGACGTATGAGACGACCGGGTACGGTGGGACAGGGTATGGCGGAGGGCACCATCAGCAGCATAAGGAGCATGGTGGCATACTTCATCGCTCTGGAAGCTCCAGTTCTAGCTCCTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAGGAGAAGGTAAAGGAGAAGCTGCCAGGACATCATCGTCATGAAGAGCAAGCAGTGTCAACCACGACACCGGGAGGTTATACGTCGGCGGAGTACGGTGGGCAGCATGAGAAGAAGGGAATAATGGAGAAGATCAAGGAGAAGCTTCCGGGACATCACTGA

Protein sequence

MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFGNPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSGSSSSSSSEDDGHGGRRKKGLKEKVKEKLPGHHRHEEQAVSTTTPGGYTSAEYGGQHEKKGIMEKIKEKLPGHH
Homology
[Close]
BLAST of CsaV3_4G005460 vs. NCBI nr
Match: XP_011653150.1 (PREDICTED: dehydrin DHN1-like [Cucumis sativus] >KGN53289.1 hypothetical protein Csa_4G045040 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 5.8e-13
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG 60
          MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG
Sbjct: 1  MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG 60

Query: 61 NPVGTGTGMGTGGTYETTGYGGTGY 86
          NPVGTGTGMGTGGTYETTGYGGTGY
Sbjct: 61 NPVGTGTGMGTGGTYETTGYGGTGY 85

[Close]
BLAST of CsaV3_4G005460 vs. NCBI nr
Match: XP_008452109.1 (PREDICTED: dehydrin DHN1 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 7.8e-10
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG 60
          MAHYQSG TDQYGNPIR XXXXXXXXXXXXXXXXXXXXXXXXR XXXXXXXXXXXXXVFG
Sbjct: 1  MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG 60

Query: 61 NPVGTGTGMGTGGTYETTGYGG 83
          NPVGTGTGMGTGGTYET+GYGG
Sbjct: 61 NPVGTGTGMGTGGTYETSGYGG 82

[Close]
BLAST of CsaV3_4G005460 vs. TrEMBL
Match: tr|A0A0A0KWM9|A0A0A0KWM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.8e-13
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG 60
          MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG
Sbjct: 1  MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG 60

Query: 61 NPVGTGTGMGTGGTYETTGYGGTGY 86
          NPVGTGTGMGTGGTYETTGYGGTGY
Sbjct: 61 NPVGTGTGMGTGGTYETTGYGGTGY 85

[Close]
BLAST of CsaV3_4G005460 vs. TrEMBL
Match: tr|A0A1S3BTX2|A0A1S3BTX2_CUCME (dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.2e-10
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG 60
          MAHYQSG TDQYGNPIR XXXXXXXXXXXXXXXXXXXXXXXXR XXXXXXXXXXXXXVFG
Sbjct: 1  MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG 60

Query: 61 NPVGTGTGMGTGGTYETTGYGG 83
          NPVGTGTGMGTGGTYET+GYGG
Sbjct: 61 NPVGTGTGMGTGGTYETSGYGG 82

The following BLAST results are available for this feature:
BLAST of CsaV3_4G005460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653150.15.8e-13100.00PREDICTED: dehydrin DHN1-like [Cucumis sativus] >KGN53289.1 hypothetical protein... [more]
XP_008452109.17.8e-1095.12PREDICTED: dehydrin DHN1 [Cucumis melo][more]
BLAST of CsaV3_4G005460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005460 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWM9|A0A0A0KWM9_CUCSA3.8e-13100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1[more]
tr|A0A1S3BTX2|A0A1S3BTX2_CUCME5.2e-1095.12dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0009415response to water
Vocabulary: INTERPRO
TermDefinition
IPR030513Dehydrin_CS
IPR000167Dehydrin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0009415 response to water
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G005460.1CsaV3_4G005460.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000167DehydrinPFAMPF00257Dehydrincoord: 8..177
e-value: 1.1E-43
score: 149.5
IPR000167DehydrinPANTHERPTHR33346FAMILY NOT NAMEDcoord: 66..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..164
NoneNo IPR availablePANTHERPTHR33346:SF9SUBFAMILY NOT NAMEDcoord: 66..177
IPR030513Dehydrin, conserved sitePROSITEPS00315DEHYDRIN_1coord: 107..122
IPR030513Dehydrin, conserved sitePROSITEPS00823DEHYDRIN_2coord: 168..175

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G005460CSPI04G05310Wild cucumber (PI 183967)cpicucB213
CsaV3_4G005460Cucsa.106380Cucumber (Gy14) v1cgycucB134
CsaV3_4G005460CmoCh16G006890Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G005460CsGy4G005210Cucumber (Gy14) v2cgybcucB171
CsaV3_4G005460Carg05752Silver-seed gourdcarcucB1063
CsaV3_4G005460Cla014571Watermelon (97103) v1cucwmB322
CsaV3_4G005460MELO3C023323Melon (DHL92) v3.5.1cucmeB273
CsaV3_4G005460MELO3C016401Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G005460ClCG07G008700Watermelon (Charleston Gray)cucwcgB344
CsaV3_4G005460Lsi07G002410Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G005460MELO3C016401.2Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G005460Cla97C07G135740Watermelon (97103) v2cucwmbB330
CsaV3_4G005460Bhi01G001874Wax gourdcucwgoB381
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_4G005460CsaV3_2G015030Cucumber (Chinese Long) v3cuccucB083
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G005460Cucumber (Chinese Long) v3cuccucB118
CsaV3_4G005460Cucumber (Chinese Long) v3cuccucB181
CsaV3_4G005460Silver-seed gourdcarcucB0440
CsaV3_4G005460Silver-seed gourdcarcucB0982
CsaV3_4G005460Cucumber (Gy14) v2cgybcucB287
CsaV3_4G005460Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G005460Cucurbita maxima (Rimu)cmacucB0796
CsaV3_4G005460Cucurbita maxima (Rimu)cmacucB0847
CsaV3_4G005460Cucurbita moschata (Rifu)cmocucB0779
CsaV3_4G005460Cucurbita moschata (Rifu)cmocucB0833
CsaV3_4G005460Cucurbita pepo (Zucchini)cpecucB0089
CsaV3_4G005460Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G005460Cucurbita pepo (Zucchini)cpecucB0497
CsaV3_4G005460Wild cucumber (PI 183967)cpicucB352
CsaV3_4G005460Bottle gourd (USVL1VR-Ls)cuclsiB276
CsaV3_4G005460Melon (DHL92) v3.5.1cucmeB342
CsaV3_4G005460Melon (DHL92) v3.6.1cucmedB336
CsaV3_4G005460Watermelon (Charleston Gray)cucwcgB300
CsaV3_4G005460Watermelon (97103) v1cucwmB344
CsaV3_4G005460Watermelon (97103) v2cucwmbB271
CsaV3_4G005460Watermelon (97103) v2cucwmbB316
CsaV3_4G005460Wax gourdcucwgoB433