Carg03643 (gene) Silver-seed gourd

Overview
NameCarg03643
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCOPII coat assembly protein SEC16, putative
LocationCucurbita_argyrosperma_scaffold_006 : 1160986 .. 1161495 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAGACCTCCGCTCTAAAACCACACCCACCGCTGCCCAATCTCCGTCGCAGAAACTCGATCACGGTGCCCGTTGTCGTGCCATCTAAGCTAAGCCTTCTCGCCGCCACCAACTCCTCCCGGGGTGTAGCGTCATCGCCGCAGCTACCGTTGGCTTTCGAGCTCGTCCCAATAAAATCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTTGCTTACACTTCCCTCAGAGACATTTTGCCCTCGGCTACCGCTATCTACTCCCCTACCGCCGCCTCTGCAGCAAATTCCGGCTACGAGATCTCGATCCGCAACCGCCTTGTGAAGCAGGCGGCGTGGGCCTATCTTCAGCCCATGGCCTCCTCCCCGAGCTCCTCTGGACCCCACCTCCTCCACCGTATCTGGCTTAGATTTTCAGCTTGGCTCAGCTTCGTCAACCTGCCCATAATTTCCAGTGTAACCAACGCTTTTAATCGAATATTTCGCATTGTTGGGGTCAGTTTTGTCTAA

mRNA sequence

ATGGACCAGACCTCCGCTCTAAAACCACACCCACCGCTGCCCAATCTCCGTCGCAGAAACTCGATCACGGTGCCCGTTGTCGTGCCATCTAAGCTAAGCCTTCTCGCCGCCACCAACTCCTCCCGGGGTGTAGCGTCATCGCCGCAGCTACCGTTGGCTTTCGAGCTCGTCCCAATAAAATCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTTGCTTACACTTCCCTCAGAGACATTTTGCCCTCGGCTACCGCTATCTACTCCCCTACCGCCGCCTCTGCAGCAAATTCCGGCTACGAGATCTCGATCCGCAACCGCCTTGTGAAGCAGGCGGCGTGGGCCTATCTTCAGCCCATGGCCTCCTCCCCGAGCTCCTCTGGACCCCACCTCCTCCACCGTATCTGGCTTAGATTTTCAGCTTGGCTCAGCTTCGTCAACCTGCCCATAATTTCCAGTGTAACCAACGCTTTTAATCGAATATTTCGCATTGTTGGGGTCAGTTTTGTCTAA

Coding sequence (CDS)

ATGGACCAGACCTCCGCTCTAAAACCACACCCACCGCTGCCCAATCTCCGTCGCAGAAACTCGATCACGGTGCCCGTTGTCGTGCCATCTAAGCTAAGCCTTCTCGCCGCCACCAACTCCTCCCGGGGTGTAGCGTCATCGCCGCAGCTACCGTTGGCTTTCGAGCTCGTCCCAATAAAATCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTTGCTTACACTTCCCTCAGAGACATTTTGCCCTCGGCTACCGCTATCTACTCCCCTACCGCCGCCTCTGCAGCAAATTCCGGCTACGAGATCTCGATCCGCAACCGCCTTGTGAAGCAGGCGGCGTGGGCCTATCTTCAGCCCATGGCCTCCTCCCCGAGCTCCTCTGGACCCCACCTCCTCCACCGTATCTGGCTTAGATTTTCAGCTTGGCTCAGCTTCGTCAACCTGCCCATAATTTCCAGTGTAACCAACGCTTTTAATCGAATATTTCGCATTGTTGGGGTCAGTTTTGTCTAA

Protein sequence

MDQTSALKPHPPLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIKSSSSSSSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMASSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRIVGVSFV
Homology
[Close]
BLAST of Carg03643 vs. NCBI nr
Match: XP_022935679.1 (uncharacterized protein LOC111442465 [Cucurbita moschata])

HSP 1 Score: 298.5 bits (763), Expect = 1.4e-77
Identity = 160/169 (94.67%), Postives = 161/169 (95.27%), Query Frame = 0 

Query: 1   MDQTSALKPHPPLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIK 60
           MDQTSALKP PPLPNLRRRNSITVPVVVPSKLSLLAAT SSRGVASSPQLPLAFELVPIK
Sbjct: 1   MDQTSALKPDPPLPNLRRRNSITVPVVVPSKLSLLAATKSSRGVASSPQLPLAFELVPIK 60

Query: 61  SSXXXXXXPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120
           SS      PSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA
Sbjct: 61  SS---SSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120

Query: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRIVGVSFV 170
           SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFR+VGVSFV
Sbjct: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRVVGVSFV 166

[Close]
BLAST of Carg03643 vs. NCBI nr
Match: XP_023526406.1 (uncharacterized protein LOC111789917 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 1.6e-76
Identity = 158/169 (93.49%), Postives = 160/169 (94.67%), Query Frame = 0 

Query: 1   MDQTSALKPHPPLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIK 60
           MDQTSALKP PPLPNLRRRNSITVPVVVPSKL+LLAAT SSRGVASSP LPLAFELVPIK
Sbjct: 1   MDQTSALKPDPPLPNLRRRNSITVPVVVPSKLNLLAATKSSRGVASSPPLPLAFELVPIK 60

Query: 61  SSXXXXXXPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120
           SS      PSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA
Sbjct: 61  SS--SPSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120

Query: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRIVGVSFV 170
           SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFR+VGVSFV
Sbjct: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRVVGVSFV 167

[Close]
BLAST of Carg03643 vs. NCBI nr
Match: XP_022983125.1 (uncharacterized protein LOC111481768 [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 1.7e-75
Identity = 156/169 (92.31%), Postives = 159/169 (94.08%), Query Frame = 0 

Query: 1   MDQTSALKPHPPLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIK 60
           MDQTSALKP PPLPNLRRRNSITVPVVV SKL+LLAAT SSRGVASSP LPLAFELVPIK
Sbjct: 1   MDQTSALKPDPPLPNLRRRNSITVPVVVSSKLNLLAATKSSRGVASSPPLPLAFELVPIK 60

Query: 61  SSXXXXXXPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120
           SS      PSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA
Sbjct: 61  SS---SSSPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120

Query: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRIVGVSFV 170
           SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISS+TNAFNRIFR+VGVSFV
Sbjct: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSITNAFNRIFRVVGVSFV 166

[Close]
BLAST of Carg03643 vs. NCBI nr
Match: XP_008442897.1 (PREDICTED: uncharacterized protein LOC103486660 [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 138/169 (81.66%), Postives = 148/169 (87.57%), Query Frame = 0 

Query: 1   MDQTSALKPHPPLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIK 60
           MD+TSALKP PP  NLRRRNSITVPV VPSKL+LLAAT  SRG  +SP LPLAFELVPIK
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLLAATKPSRGAEASPPLPLAFELVPIK 60

Query: 61  SSXXXXXXPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120
           SS      PSLAYTSLRDILPS TA  SPTAASAANSGYEISIRNRLVKQAAWAYLQPM+
Sbjct: 61  SS-SSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPMS 120

Query: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRIVGVSFV 170
           SSP SSGPHLL RIWLRFSA LSF+NLPIISS+TNAF+RIFR+VG++FV
Sbjct: 121 SSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

[Close]
BLAST of Carg03643 vs. NCBI nr
Match: XP_011652026.1 (PREDICTED: uncharacterized protein LOC105434978 [Cucumis sativus] >KGN59184.1 hypothetical protein Csa_3G778400 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 4.0e-64
Identity = 136/169 (80.47%), Postives = 147/169 (86.98%), Query Frame = 0 

Query: 1   MDQTSALKPHPPLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIK 60
           MD TSALKP  P  NLRRRNSITVPV VPSKL+LLAAT SSRG  +SP+LPLAFELVPIK
Sbjct: 1   MDDTSALKPDSPFSNLRRRNSITVPVAVPSKLNLLAATKSSRGAEASPRLPLAFELVPIK 60

Query: 61  SSXXXXXXPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120
           SS      PSLAYTSL+DILPS TA  SPTA SAANSGYEISIRNRLVKQAAWAYLQPM+
Sbjct: 61  SS-SSESSPSLAYTSLKDILPSPTASSSPTAVSAANSGYEISIRNRLVKQAAWAYLQPMS 120

Query: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRIVGVSFV 170
           SSP SSGPHLL RIWLRFSA LSF+NLPIISS+TNAF+RIFR+VG++FV
Sbjct: 121 SSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

[Close]
BLAST of Carg03643 vs. TAIR10
Match: AT5G06280.1 (unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 9.7e-12
Identity = 54/140 (38.57%), Postives = 69/140 (49.29%), Query Frame = 0 

Query: 12  PLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIKSSXXXXXXPSL 71
           P   LRR  SI       S ++ L        +AS+P     +EL+ +K S        +
Sbjct: 9   PATQLRRTKSI-------SNMTTLTPPEVPFDIASTPPSSFDYELISVKPSSF------V 68

Query: 72  AYTSLRDI----------LPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQP--M 131
           AYTSLRDI          LPS     SP  ++AA    +ISIRNRLVKQAA +YLQP  +
Sbjct: 69  AYTSLRDIISSPINSSLNLPSINGSCSPVISTAAG---DISIRNRLVKQAALSYLQPTVL 128

Query: 132 ASSPSSSGPHLLHRIWLRFS 140
            SS  S+G     R+WL  S
Sbjct: 129 TSSDDSAGSQFFRRVWLHLS 132

[Close]
BLAST of Carg03643 vs. TAIR10
Match: AT3G52520.1 (unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-10
Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 0 

Query: 52  LAFELVPIKSSXXXXXXPSLAYTSLRDILP-SATAIYSPT---AASAANSGYEISIRNRL 111
           L  ELV +  S      P   YTSL+DILP S+T + SP    A ++A SG  I+IRNRL
Sbjct: 23  LDLELVSVNKS---SEDPLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRNRL 82

Query: 112 VKQAAWAYLQPMASSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIF 162
           VKQAA +YLQP   +PSS+ P  L R+   F        + ++S+  +A  RIF
Sbjct: 83  VKQAACSYLQPSTPTPSSN-PSFLRRVSSSF--------IRLVSAFFDALLRIF 124

[Close]
BLAST of Carg03643 vs. TrEMBL
Match: tr|A0A1S3B6B1|A0A1S3B6B1_CUCME (uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.4e-65
Identity = 138/169 (81.66%), Postives = 148/169 (87.57%), Query Frame = 0 

Query: 1   MDQTSALKPHPPLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIK 60
           MD+TSALKP PP  NLRRRNSITVPV VPSKL+LLAAT  SRG  +SP LPLAFELVPIK
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLLAATKPSRGAEASPPLPLAFELVPIK 60

Query: 61  SSXXXXXXPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120
           SS      PSLAYTSLRDILPS TA  SPTAASAANSGYEISIRNRLVKQAAWAYLQPM+
Sbjct: 61  SS-SSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPMS 120

Query: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRIVGVSFV 170
           SSP SSGPHLL RIWLRFSA LSF+NLPIISS+TNAF+RIFR+VG++FV
Sbjct: 121 SSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

[Close]
BLAST of Carg03643 vs. TrEMBL
Match: tr|A0A0A0LE45|A0A0A0LE45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.7e-64
Identity = 136/169 (80.47%), Postives = 147/169 (86.98%), Query Frame = 0 

Query: 1   MDQTSALKPHPPLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIK 60
           MD TSALKP  P  NLRRRNSITVPV VPSKL+LLAAT SSRG  +SP+LPLAFELVPIK
Sbjct: 1   MDDTSALKPDSPFSNLRRRNSITVPVAVPSKLNLLAATKSSRGAEASPRLPLAFELVPIK 60

Query: 61  SSXXXXXXPSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMA 120
           SS      PSLAYTSL+DILPS TA  SPTA SAANSGYEISIRNRLVKQAAWAYLQPM+
Sbjct: 61  SS-SSESSPSLAYTSLKDILPSPTASSSPTAVSAANSGYEISIRNRLVKQAAWAYLQPMS 120

Query: 121 SSPSSSGPHLLHRIWLRFSAWLSFVNLPIISSVTNAFNRIFRIVGVSFV 170
           SSP SSGPHLL RIWLRFSA LSF+NLPIISS+TNAF+RIFR+VG++FV
Sbjct: 121 SSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

[Close]
BLAST of Carg03643 vs. TrEMBL
Match: tr|A0A1R3HDV1|A0A1R3HDV1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29613 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31
Identity = 93/168 (55.36%), Postives = 111/168 (66.07%), Query Frame = 0 

Query: 11  PPLPNLRRRNSITVPVVVPSKLSLLA-----ATNSSRGVASSPQLPLAFELVPIKSSXXX 70
           P L  LRRRNSI+ PV +P+KLSLL        NS    ++SP  PL  EL+ +K+S   
Sbjct: 8   PSLSTLRRRNSISSPVQLPTKLSLLTPDPLQTANSLPNGSASP--PLDLELISLKASFN- 67

Query: 71  XXXPSLAYTSLRDILP-SATAIYSPTAA-SAANSGYEISIRNRLVKQAAWAYLQPMASSP 130
                 +YTSL+DILP SA AI SPTAA SA+NSGYEISIRNRLVKQAAWAYLQPMA+SP
Sbjct: 68  ------SYTSLKDILPSSAVAINSPTAAGSASNSGYEISIRNRLVKQAAWAYLQPMAASP 127

Query: 131 SSSGPHLLHRIWLRF------SAWLSFVNLPIISSVTNAFNRIFRIVG 166
            SSGPH   RIWLRF      S+   F +L ++  +T  F+RI R  G
Sbjct: 128 DSSGPHFFRRIWLRFSSQNPISSCFRFFHLKLLPGLTRVFDRILRTFG 166

[Close]
BLAST of Carg03643 vs. TrEMBL
Match: tr|A0A1R3IIV5|A0A1R3IIV5_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_11929 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.9e-31
Identity = 93/168 (55.36%), Postives = 112/168 (66.67%), Query Frame = 0 

Query: 11  PPLPNLRRRNSITVPVVVPSKLSLLA-----ATNSSRGVASSPQLPLAFELVPIKSSXXX 70
           P L  LRRRNSI+ PV +P+KLSLL       +NS    ++SP  PL  EL+ +K+S   
Sbjct: 8   PSLSTLRRRNSISSPVQLPTKLSLLTPNPLETSNSLPNGSASP--PLDLELISLKASFN- 67

Query: 71  XXXPSLAYTSLRDILP-SATAIYSPTAA-SAANSGYEISIRNRLVKQAAWAYLQPMASSP 130
                 +YTSL+DILP SA AI SPTAA SA+NSGYEISIRNRLVKQAAWAYLQPMA+SP
Sbjct: 68  ------SYTSLKDILPSSAVAINSPTAAGSASNSGYEISIRNRLVKQAAWAYLQPMAASP 127

Query: 131 SSSGPHLLHRIWLRF------SAWLSFVNLPIISSVTNAFNRIFRIVG 166
            SSGPH   RIWLRF      S+   F +L ++  +T  F+RI R  G
Sbjct: 128 DSSGPHFFRRIWLRFSSQNPISSCFRFFHLKLLPGLTRFFDRILRTFG 166

[Close]
BLAST of Carg03643 vs. TrEMBL
Match: tr|B9IIN8|B9IIN8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G072500v3 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 81/166 (48.80%), Postives = 102/166 (61.45%), Query Frame = 0 

Query: 9   PHPPLPNLRRRNSITVPVVVPSKLSLLAATNSSRGVASSPQLPLAFELVPIKSSXXXXXX 68
           P P  P LRRRNSI    V+P+KLSL  ++     +  +    L   L+P+KS       
Sbjct: 6   PPPRTPTLRRRNSIATSFVIPTKLSLHTSSLPPSHLNGTLPSHLDISLLPLKS------- 65

Query: 69  PSLAYTSLRDILPSATAIYSPTAASAANSGYEISIRNRLVKQAAWAYLQPMASSPSSSGP 128
            SL+YTS++D+LPSAT     +A S   S YEI IRNRLVKQAAWAYLQPM+SSP SSG 
Sbjct: 66  -SLSYTSIKDLLPSATVNSPTSATSNTTSTYEIPIRNRLVKQAAWAYLQPMSSSPDSSGT 125

Query: 129 HLLHRIWLRFS------AWLSFVNLPIISSVTNAFNRIFRIVGVSF 169
           H L R+WLR S      A   F++  +I S+TNAF+RI R + V F
Sbjct: 126 HFLRRLWLRLSTKNPITACFGFISFRVIPSITNAFDRILRAIRVHF 163

The following BLAST results are available for this feature:
BLAST of Carg03643 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935679.11.4e-7794.67uncharacterized protein LOC111442465 [Cucurbita moschata][more]
XP_023526406.11.6e-7693.49uncharacterized protein LOC111789917 [Cucurbita pepo subsp. pepo][more]
XP_022983125.11.7e-7592.31uncharacterized protein LOC111481768 [Cucurbita maxima][more]
XP_008442897.13.6e-6581.66PREDICTED: uncharacterized protein LOC103486660 [Cucumis melo][more]
XP_011652026.14.0e-6480.47PREDICTED: uncharacterized protein LOC105434978 [Cucumis sativus] >KGN59184.1 hy... [more]
BLAST of Carg03643 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G06280.19.7e-1238.57unknown protein[more]
AT3G52520.15.3e-1042.98unknown protein[more]
BLAST of Carg03643 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg03643 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B6B1|A0A1S3B6B1_CUCME2.4e-6581.66uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=... [more]
tr|A0A0A0LE45|A0A0A0LE45_CUCSA2.7e-6480.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1[more]
tr|A0A1R3HDV1|A0A1R3HDV1_9ROSI3.0e-3155.36Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_29613 PE=4 SV=1[more]
tr|A0A1R3IIV5|A0A1R3IIV5_COCAP3.9e-3155.36Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_11929 PE=4 ... [more]
tr|B9IIN8|B9IIN8_POPTR1.4e-2848.80Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G072500v3 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03643-RACarg03643-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34569:SF2SUBFAMILY NOT NAMEDcoord: 1..166
NoneNo IPR availablePANTHERPTHR34569FAMILY NOT NAMEDcoord: 1..166

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg03643Cla017647Watermelon (97103) v1carwmB0237
Carg03643Csa3G778400Cucumber (Chinese Long) v2carcuB0276
Carg03643Csa6G454420Cucumber (Chinese Long) v2carcuB0278
Carg03643MELO3C024577Melon (DHL92) v3.5.1carmeB0253
Carg03643MELO3C009518Melon (DHL92) v3.5.1carmeB0251
Carg03643ClCG10G018510Watermelon (Charleston Gray)carwcgB0240
Carg03643CSPI06G25780Wild cucumber (PI 183967)carcpiB0282
Carg03643CSPI03G35400Wild cucumber (PI 183967)carcpiB0280
Carg03643Cucsa.083710Cucumber (Gy14) v1carcgyB0291
Carg03643CmaCh07G008290Cucurbita maxima (Rimu)carcmaB0351
Carg03643CmaCh03G011270Cucurbita maxima (Rimu)carcmaB0348
Carg03643CmaCh14G003450Cucurbita maxima (Rimu)carcmaB0343
Carg03643CmoCh03G011180Cucurbita moschata (Rifu)carcmoB0349
Carg03643CmoCh07G008590Cucurbita moschata (Rifu)carcmoB0352
Carg03643CmoCh14G003400Cucurbita moschata (Rifu)carcmoB0347
Carg03643CmoCh06G005090Cucurbita moschata (Rifu)carcmoB0351
Carg03643Cp4.1LG19g04720Cucurbita pepo (Zucchini)carcpeB0351
Carg03643Cp4.1LG03g00460Cucurbita pepo (Zucchini)carcpeB0353
Carg03643Cp4.1LG10g03670Cucurbita pepo (Zucchini)carcpeB0348
Carg03643MELO3C009518.2Melon (DHL92) v3.6.1carmedB0261
Carg03643MELO3C024577.2Melon (DHL92) v3.6.1carmedB0263
Carg03643CsaV3_6G040990Cucumber (Chinese Long) v3carcucB0280
Carg03643CsaV3_3G037750Cucumber (Chinese Long) v3carcucB0279
Carg03643Bhi11G002022Wax gourdcarwgoB0317
Carg03643Bhi03G001389Wax gourdcarwgoB0330
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03643Carg10507Silver-seed gourdcarcarB276
Carg03643Carg25901Silver-seed gourdcarcarB290
Carg03643Carg16200Silver-seed gourdcarcarB291
Carg03643Carg05340Silver-seed gourdcarcarB292
The following block(s) are covering this gene:
GeneOrganismBlock
Carg03643Silver-seed gourdcarcarB289
Carg03643Silver-seed gourdcarcarB294
Carg03643Cucumber (Gy14) v2carcgybB0263
Carg03643Cucumber (Gy14) v2carcgybB0266
Carg03643Cucumber (Gy14) v2carcgybB0267
Carg03643Cucumber (Gy14) v1carcgyB0293
Carg03643Cucumber (Gy14) v1carcgyB0294
Carg03643Cucurbita maxima (Rimu)carcmaB0345
Carg03643Cucurbita maxima (Rimu)carcmaB0347
Carg03643Cucurbita maxima (Rimu)carcmaB0350
Carg03643Cucurbita moschata (Rifu)carcmoB0348
Carg03643Cucurbita pepo (Zucchini)carcpeB0350
Carg03643Cucurbita pepo (Zucchini)carcpeB0354
Carg03643Wild cucumber (PI 183967)carcpiB0284
Carg03643Cucumber (Chinese Long) v2carcuB0280
Carg03643Cucumber (Chinese Long) v3carcucB0282
Carg03643Bottle gourd (USVL1VR-Ls)carlsiB222
Carg03643Bottle gourd (USVL1VR-Ls)carlsiB223
Carg03643Bottle gourd (USVL1VR-Ls)carlsiB225
Carg03643Melon (DHL92) v3.5.1carmeB0252
Carg03643Melon (DHL92) v3.6.1carmedB0262
Carg03643Watermelon (Charleston Gray)carwcgB0241
Carg03643Watermelon (97103) v1carwmB0239
Carg03643Watermelon (97103) v2carwmbB0254
Carg03643Watermelon (97103) v2carwmbB0255
Carg03643Wax gourdcarwgoB0328