Carg25901 (gene) Silver-seed gourd

Overview
NameCarg25901
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCOPII coat assembly protein SEC16, putative
LocationCucurbita_argyrosperma_scaffold_350 : 124827 .. 126027 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTTCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTCGTGCCATCAAAAACTAAACCTTTTCGCCTTCGCCGCACACAATCCTCTGGCGCTCAGCTGCATCGCCGCCATTGGCTTTTGAGCTCTCTGCCCGATTAAATCCTCCTCCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCCGCCTCTGCAGCGAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGTGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGTTTTGTCTATTAATGGTGGTCAGGGGAAATACAAATCAGCTCCCCCCTTTGACTGAAATAAATCGTCATCTGTTTCTATTCTGTTCTATGTATTAATGAATATATGCACATACACCCCTATGAGTACAGTCTAAGAAGAAGAAGAAAAAGAAAAATTGGGATGTAAATGTTCGATGAAAAGTTCCAAAATGAATCTAATCTTTTATCTTCCTTTGGTCGGGGAGAGGGTTTGCAGTGTTGTCGTCTTCTTTTTTATGTACAGTTTTTTGTTTGGTAACTTCTAGTAGGTTTTTTTGGATCCTCGGAATCGAGCTTGGTTGTGGTTTTGATCTTCATAAAAATAGTTTGTTTGATCATGAAGGGGAAATTGCACATCAAAGTCCTCCGATGTGGCTGTGGAACGCCGATTACTGGAGCCGGGCAGAGGAGGGGCACTTGGAAACCACTTCATGGCATTGCTCTTGCTCGAGTCCTTGGTCTTCCTTGGAGGCTTATGGAAGAACGAGGGCAGATCATTTGGACGCGGCGGAGGTGGTGGTGGCGCTGGCGGCGCACTTGGACGTTGGTGACGTTCGTTCCTCTGCAAAATGTCAATTTTCATCTCTAATTAAATGGATTTCGATGCTCCGGCTGGGTTCTATTCCTAATAAGGTTTTTGTAAATGTCTTAAAAGCACAGGAAAATAAGTTCTTTCTTGCTCTCATTAACTGCTAA

mRNA sequence

ATGGATGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTTCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTCCTCTCTGCCCGATTAAATCCTCCTCCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCCGCCTCTGCAGCGAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGTGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGGGAAATTGCACATCAAAGTCCTCCGATGTGGCTGTGGAACGCCGATTACTGGAGCCGGGCAGAGGAGGGGCACTTGGAAACCACTTCATGGCATTGCTCTTGCTCGAGTCCTTGGTCTTCCTTGGAGGCTTATGGAAGAACGAGGGCAGATCATTTGGACGCGGCGGAGGTGGTGGTGGCGCTGGCGGCGCACTTGGACGTTGGTGACGTTCGTTCCTCTGCAAAATGTCAATTTTCATCTCTAATTAAATGGATTTCGATGCTCCGGCTGGGTTCTATTCCTAATAAGGTTTTTGTAAATGTCTTAAAAGCACAGGAAAATAAGTTCTTTCTTGCTCTCATTAACTGCTAA

Coding sequence (CDS)

ATGGATGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTTCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTCCTCTCTGCCCGATTAAATCCTCCTCCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCCGCCTCTGCAGCGAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGTGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGGGAAATTGCACATCAAAGTCCTCCGATGTGGCTGTGGAACGCCGATTACTGGAGCCGGGCAGAGGAGGGGCACTTGGAAACCACTTCATGGCATTGCTCTTGCTCGAGTCCTTGGTCTTCCTTGGAGGCTTATGGAAGAACGAGGGCAGATCATTTGGACGCGGCGGAGGTGGTGGTGGCGCTGGCGGCGCACTTGGACGTTGGTGACGTTCGTTCCTCTGCAAAATGTCAATTTTCATCTCTAATTAAATGGATTTCGATGCTCCGGCTGGGTTCTATTCCTAATAAGGTTTTTGTAAATGTCTTAAAAGCACAGGAAAATAAGTTCTTTCTTGCTCTCATTAACTGCTAA

Protein sequence

MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLNPPPHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFREIAHQSPPMWLWNADYWSRAEEGHLETTSWHCSCSSPWSSLEAYGRTRADHLDAAEVVVALAAHLDVGDVRSSAKCQFSSLIKWISMLRLGSIPNKVFVNVLKAQENKFFLALINC
Homology
[Close]
BLAST of Carg25901 vs. NCBI nr
Match: XP_022957964.1 (uncharacterized protein LOC111459312 [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 2.0e-59
Identity = 129/161 (80.12%), Postives = 132/161 (81.99%), Query Frame = 0 

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN----------------PP--------- 60
           MDDISAQKPYPPPPNLRRRNSIAVPVV+ ++LN                PP         
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60

Query: 61  --PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
              HSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 135
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 161

[Close]
BLAST of Carg25901 vs. NCBI nr
Match: XP_023005655.1 (uncharacterized protein LOC111498593 [Cucurbita maxima])

HSP 1 Score: 238.8 bits (608), Expect = 2.0e-59
Identity = 129/161 (80.12%), Postives = 132/161 (81.99%), Query Frame = 0 

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN----------------PP--------- 60
           MDDISAQKPYPPPPNLRRRNSIAVPVV+ ++LN                PP         
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFSATKSSGGSAASPPLAFELFPVK 60

Query: 61  --PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
              HSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 135
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 161

[Close]
BLAST of Carg25901 vs. NCBI nr
Match: XP_023539526.1 (uncharacterized protein LOC111800166 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.1 bits (588), Expect = 4.1e-57
Identity = 126/161 (78.26%), Postives = 130/161 (80.75%), Query Frame = 0 

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN----------------PP--------- 60
           MDDISA KP+PPPPNLRRRNSIAVPVV+ ++LN                PP         
Sbjct: 1   MDDISALKPHPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60

Query: 61  --PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
              HSLTYTSLRDILPS TSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSSTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 135
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 161

[Close]
BLAST of Carg25901 vs. NCBI nr
Match: XP_008442897.1 (PREDICTED: uncharacterized protein LOC103486660 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 6.2e-45
Identity = 109/164 (66.46%), Postives = 116/164 (70.73%), Query Frame = 0 

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN--------------PP----------- 60
           MD+ SA KP PP  NLRRRNSI VPV + ++LN              PP           
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLLAATKPSRGAEASPPLPLAFELVPIK 60

Query: 61  ------PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 120
                   SL YTSLRDILPS T+ SSPTAASAANSG+EISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPMSS 120

Query: 121 SPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVG 134
           SPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG
Sbjct: 121 SPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVG 164

[Close]
BLAST of Carg25901 vs. NCBI nr
Match: XP_011652026.1 (PREDICTED: uncharacterized protein LOC105434978 [Cucumis sativus] >KGN59184.1 hypothetical protein Csa_3G778400 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 4.0e-44
Identity = 106/164 (64.63%), Postives = 113/164 (68.90%), Query Frame = 0 

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN--------------------------- 60
           MDD SA KP  P  NLRRRNSI VPV + ++LN                           
Sbjct: 1   MDDTSALKPDSPFSNLRRRNSITVPVAVPSKLNLLAATKSSRGAEASPRLPLAFELVPIK 60

Query: 61  ----PPPHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 120
                   SL YTSL+DILPSPT+ SSPTA SAANSG+EISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSSESSPSLAYTSLKDILPSPTASSSPTAVSAANSGYEISIRNRLVKQAAWAYLQPMSS 120

Query: 121 SPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVG 134
           SPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG
Sbjct: 121 SPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVG 164

[Close]
BLAST of Carg25901 vs. TAIR10
Match: AT3G52520.1 (unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 0 

Query: 41  YTSLRDILP-SPTSMSSPT---AASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGP 100
           YTSL+DILP S T++ SP    A ++A SG  I+IRNRLVKQAA +YLQP + +P SS P
Sbjct: 41  YTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRNRLVKQAACSYLQPSTPTP-SSNP 100

Query: 101 HLLRRIWLRFSACLGFLNLHIISSVTKALDRIF 130
             LRR+   F        + ++S+   AL RIF
Sbjct: 101 SFLRRVSSSF--------IRLVSAFFDALLRIF 124

[Close]
BLAST of Carg25901 vs. TAIR10
Match: AT5G06280.1 (unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-10
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 0 

Query: 35  PPHSLTYTSLRDILPSPTSMS----------SPTAASAANSGFEISIRNRLVKQAAWAYL 94
           P   + YTSLRDI+ SP + S          SP  ++AA    +ISIRNRLVKQAA +YL
Sbjct: 51  PSSFVAYTSLRDIISSPINSSLNLPSINGSCSPVISTAAG---DISIRNRLVKQAALSYL 110

Query: 95  QP--MSSSPGSSGPHLLRRIWLRFS 108
           QP  ++SS  S+G    RR+WL  S
Sbjct: 111 QPTVLTSSDDSAGSQFFRRVWLHLS 132

[Close]
BLAST of Carg25901 vs. TrEMBL
Match: tr|A0A1S3B6B1|A0A1S3B6B1_CUCME (uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.1e-45
Identity = 109/164 (66.46%), Postives = 116/164 (70.73%), Query Frame = 0 

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN--------------PP----------- 60
           MD+ SA KP PP  NLRRRNSI VPV + ++LN              PP           
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLLAATKPSRGAEASPPLPLAFELVPIK 60

Query: 61  ------PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 120
                   SL YTSLRDILPS T+ SSPTAASAANSG+EISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPMSS 120

Query: 121 SPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVG 134
           SPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG
Sbjct: 121 SPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVG 164

[Close]
BLAST of Carg25901 vs. TrEMBL
Match: tr|A0A0A0LE45|A0A0A0LE45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.7e-44
Identity = 106/164 (64.63%), Postives = 113/164 (68.90%), Query Frame = 0 

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN--------------------------- 60
           MDD SA KP  P  NLRRRNSI VPV + ++LN                           
Sbjct: 1   MDDTSALKPDSPFSNLRRRNSITVPVAVPSKLNLLAATKSSRGAEASPRLPLAFELVPIK 60

Query: 61  ----PPPHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 120
                   SL YTSL+DILPSPT+ SSPTA SAANSG+EISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSSESSPSLAYTSLKDILPSPTASSSPTAVSAANSGYEISIRNRLVKQAAWAYLQPMSS 120

Query: 121 SPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVG 134
           SPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG
Sbjct: 121 SPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVG 164

[Close]
BLAST of Carg25901 vs. TrEMBL
Match: tr|A0A2P5D9V3|A0A2P5D9V3_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_082490 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.8e-28
Identity = 75/135 (55.56%), Postives = 93/135 (68.89%), Query Frame = 0 

Query: 11  PPPPNLRRRNSIAVPVVLSARLNPPPHSLTYTSLRDILPSPTS---MSSPTAASAANSGF 70
           PPPP L          VL +    PP SL+YTSL+D++PS  S   ++SPTAASAANSG+
Sbjct: 53  PPPPTL--------DFVLISFKTSPPSSLSYTSLKDLIPSSISGAGINSPTAASAANSGY 112

Query: 71  EISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSA-------CLGFLNLHIISS 130
           EISIRNRLVKQAAWAYLQPMSSSP S G H L R+W+R SA       CLGF++ H+I +
Sbjct: 113 EISIRNRLVKQAAWAYLQPMSSSPSSDGAHFLSRLWVRLSAAQNPVTSCLGFISRHVIPT 172

Query: 131 VTKALDRIFRVVGFR 136
           +T+A+ RI R +  R
Sbjct: 173 LTRAVARILRYLRVR 179

[Close]
BLAST of Carg25901 vs. TrEMBL
Match: tr|B9IIN8|B9IIN8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G072500v3 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 78/159 (49.06%), Postives = 94/159 (59.12%), Query Frame = 0 

Query: 4   ISAQKPYPPPPNLRRRNSIAVPVVLSARLN------PPPH------------------SL 63
           +S Q P P  P LRRRNSIA   V+  +L+      PP H                  SL
Sbjct: 1   MSKQGPPPRTPTLRRRNSIATSFVIPTKLSLHTSSLPPSHLNGTLPSHLDISLLPLKSSL 60

Query: 64  TYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLL 123
           +YTS++D+LPS T  S  +A S   S +EI IRNRLVKQAAWAYLQPMSSSP SSG H L
Sbjct: 61  SYTSIKDLLPSATVNSPTSATSNTTSTYEIPIRNRLVKQAAWAYLQPMSSSPDSSGTHFL 120

Query: 124 RRIWLRFS------ACLGFLNLHIISSVTKALDRIFRVV 133
           RR+WLR S      AC GF++  +I S+T A DRI R +
Sbjct: 121 RRLWLRLSTKNPITACFGFISFRVIPSITNAFDRILRAI 159

[Close]
BLAST of Carg25901 vs. TrEMBL
Match: tr|A0A067KJ30|A0A067KJ30_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08781 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.9e-27
Identity = 81/156 (51.92%), Postives = 97/156 (62.18%), Query Frame = 0 

Query: 9   PYPPPPNLRRRNSIAVPVVLSARLNPP-------------------------PHSLTYTS 68
           P  PPP LRRRNSIA  VV+  +L  P                           SL+YTS
Sbjct: 9   PLAPPPTLRRRNSIATSVVIPTQLTLPSKPLYTLSLPTGNGSDFELGQLASFKSSLSYTS 68

Query: 69  LRDILPSPTSMSSPTAA-SAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRI 128
           L+DILPS T+++SPTAA SAA S  EISIRNRLVKQAAWAYLQPMSSSP SS  H LRR+
Sbjct: 69  LKDILPS-TAVNSPTAAPSAAGSACEISIRNRLVKQAAWAYLQPMSSSPDSSSQHFLRRL 128

Query: 129 WLRFS------ACLGFLNLHIISSVTKALDRIFRVV 133
           WL+ S      AC+ F+++HII S+T A D I + +
Sbjct: 129 WLQLSTRNPITACIRFISIHIIPSITGAFDWIIQAI 163

The following BLAST results are available for this feature:
BLAST of Carg25901 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957964.12.0e-5980.12uncharacterized protein LOC111459312 [Cucurbita moschata][more]
XP_023005655.12.0e-5980.12uncharacterized protein LOC111498593 [Cucurbita maxima][more]
XP_023539526.14.1e-5778.26uncharacterized protein LOC111800166 [Cucurbita pepo subsp. pepo][more]
XP_008442897.16.2e-4566.46PREDICTED: uncharacterized protein LOC103486660 [Cucumis melo][more]
XP_011652026.14.0e-4464.63PREDICTED: uncharacterized protein LOC105434978 [Cucumis sativus] >KGN59184.1 hy... [more]
BLAST of Carg25901 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52520.12.7e-1048.39unknown protein[more]
AT5G06280.17.9e-1047.06unknown protein[more]
BLAST of Carg25901 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg25901 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B6B1|A0A1S3B6B1_CUCME4.1e-4566.46uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=... [more]
tr|A0A0A0LE45|A0A0A0LE45_CUCSA2.7e-4464.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1[more]
tr|A0A2P5D9V3|A0A2P5D9V3_PARAD7.8e-2855.56Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_082490 PE... [more]
tr|B9IIN8|B9IIN8_POPTR1.3e-2749.06Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G072500v3 PE=... [more]
tr|A0A067KJ30|A0A067KJ30_JATCU3.9e-2751.92Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08781 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25901-RACarg25901-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34569:SF2SUBFAMILY NOT NAMEDcoord: 31..132
NoneNo IPR availablePANTHERPTHR34569FAMILY NOT NAMEDcoord: 31..132

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25901Cla017647Watermelon (97103) v1carwmB0608
Carg25901Csa3G778400Cucumber (Chinese Long) v2carcuB0637
Carg25901MELO3C009518Melon (DHL92) v3.5.1carmeB0613
Carg25901ClCG10G018510Watermelon (Charleston Gray)carwcgB0593
Carg25901CSPI03G35400Wild cucumber (PI 183967)carcpiB0643
Carg25901CSPI06G25780Wild cucumber (PI 183967)carcpiB0644
Carg25901Cucsa.083710Cucumber (Gy14) v1carcgyB0685
Carg25901CmaCh03G011270Cucurbita maxima (Rimu)carcmaB0857
Carg25901CmaCh14G003450Cucurbita maxima (Rimu)carcmaB0856
Carg25901CmoCh03G011180Cucurbita moschata (Rifu)carcmoB0834
Carg25901CmoCh07G008590Cucurbita moschata (Rifu)carcmoB0836
Carg25901CmoCh06G005090Cucurbita moschata (Rifu)carcmoB0835
Carg25901CmoCh14G003400Cucurbita moschata (Rifu)carcmoB0833
Carg25901Lsi03G018470Bottle gourd (USVL1VR-Ls)carlsiB557
Carg25901Cp4.1LG19g04720Cucurbita pepo (Zucchini)carcpeB0867
Carg25901Cp4.1LG10g03670Cucurbita pepo (Zucchini)carcpeB0866
Carg25901Cp4.1LG03g00460Cucurbita pepo (Zucchini)carcpeB0868
Carg25901Cp4.1LG08g09700Cucurbita pepo (Zucchini)carcpeB0869
Carg25901MELO3C024577.2Melon (DHL92) v3.6.1carmedB0620
Carg25901MELO3C009518.2Melon (DHL92) v3.6.1carmedB0619
Carg25901CsaV3_6G040990Cucumber (Chinese Long) v3carcucB0645
Carg25901CsaV3_3G037750Cucumber (Chinese Long) v3carcucB0644
Carg25901Bhi11G002022Wax gourdcarwgoB0726
Carg25901Bhi03G001389Wax gourdcarwgoB0727
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg25901Carg10507Silver-seed gourdcarcarB277
Carg25901Carg03643Silver-seed gourdcarcarB290
The following block(s) are covering this gene:
GeneOrganismBlock
Carg25901Watermelon (97103) v2carwmbB0636
Carg25901Cucumber (Gy14) v2carcgybB0609
Carg25901Cucumber (Gy14) v2carcgybB0610
Carg25901Cucumber (Gy14) v1carcgyB0686
Carg25901Cucurbita maxima (Rimu)carcmaB0858
Carg25901Bottle gourd (USVL1VR-Ls)carlsiB556
Carg25901Watermelon (Charleston Gray)carwcgB0594
Carg25901Watermelon (97103) v1carwmB0609