Csa6G454420 (gene) Cucumber (Chinese Long) v2

NameCsa6G454420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 21790405 .. 21790881 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAATCCTCCGCCCAATTAACCTATCCACCGCCGTCCCCATCACTCCGCCGCACAACCTTTCTTCCCTCCTCCCCCATGCCTCCGCCAAACCCAGCCGTTTCCCCTCCACCACCGCCATCTCCCATTAACTTAGCTCTCCTCTCCTTCAAATCCTCTTCTCAATCCTACACTTCTCTCAAGGACATCCTTCCCTCTGCCTCTGCCTCTGCTGCCGCCGTCAACTCTCCCACCGCAGCTTCCCCCGCTAACTCCCCCTACGAAATCTCCATCCGCAATCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAGCCTATGTCCGCTTCTTCCTATTCCGCCGGCCCCAATTTCTTCCATCGTTTCTGCCTCCGTTTCTCTACTGGAAATCCGATCTACAGTTGTTTTGGATTCATCAGAAGCAGTATTGTTCCGGCTATAATCCGTGCTTTTCGGTTCTGCATTTGCTTTTGA

mRNA sequence

ATGGCCAAATCCTCCGCCCAATTAACCTATCCACCGCCGTCCCCATCACTCCGCCGCACAACCTTTCTTCCCTCCTCCCCCATGCCTCCGCCAAACCCAGCCGTTTCCCCTCCACCACCGCCATCTCCCATTAACTTAGCTCTCCTCTCCTTCAAATCCTCTTCTCAATCCTACACTTCTCTCAAGGACATCCTTCCCTCTGCCTCTGCCTCTGCTGCCGCCGTCAACTCTCCCACCGCAGCTTCCCCCGCTAACTCCCCCTACGAAATCTCCATCCGCAATCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAGCCTATGTCCGCTTCTTCCTATTCCGCCGGCCCCAATTTCTTCCATCGTTTCTGCCTCCGTTTCTCTACTGGAAATCCGATCTACAGTTGTTTTGGATTCATCAGAAGCAGTATTGTTCCGGCTATAATCCGTGCTTTTCGGTTCTGCATTTGCTTTTGA

Coding sequence (CDS)

ATGGCCAAATCCTCCGCCCAATTAACCTATCCACCGCCGTCCCCATCACTCCGCCGCACAACCTTTCTTCCCTCCTCCCCCATGCCTCCGCCAAACCCAGCCGTTTCCCCTCCACCACCGCCATCTCCCATTAACTTAGCTCTCCTCTCCTTCAAATCCTCTTCTCAATCCTACACTTCTCTCAAGGACATCCTTCCCTCTGCCTCTGCCTCTGCTGCCGCCGTCAACTCTCCCACCGCAGCTTCCCCCGCTAACTCCCCCTACGAAATCTCCATCCGCAATCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAGCCTATGTCCGCTTCTTCCTATTCCGCCGGCCCCAATTTCTTCCATCGTTTCTGCCTCCGTTTCTCTACTGGAAATCCGATCTACAGTTGTTTTGGATTCATCAGAAGCAGTATTGTTCCGGCTATAATCCGTGCTTTTCGGTTCTGCATTTGCTTTTGA

Protein sequence

MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF*
BLAST of Csa6G454420 vs. TrEMBL
Match: A0A0A0KHJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454420 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.0e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1

Query: 1   MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTS 60
           MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTS
Sbjct: 1   MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTS 60

Query: 61  LKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF 120
           LKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF
Sbjct: 61  LKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF 120

Query: 121 HRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF 159
           HRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF
Sbjct: 121 HRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF 158

BLAST of Csa6G454420 vs. TrEMBL
Match: A0A061EUC6_THECC (COPII coat assembly protein SEC16, putative OS=Theobroma cacao GN=TCM_022851 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.3e-30
Identity = 78/137 (56.93%), Postives = 93/137 (67.88%), Query Frame = 1

Query: 18  RRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNS 77
           RR T L   P+   N   +     SP++L L+S K+S  SYTSLKDILPS   SA A+NS
Sbjct: 84  RRLTLLTPKPLQTANSLPNGSASSSPLDLELISLKTSLASYTSLKDILPS---SAVAINS 143

Query: 78  PTAASPA-NSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSC 137
           PTAA  A NS YEISIRNRLVKQAAWAYLQPMSAS  S+GP+FF R  LRFS+ NPI SC
Sbjct: 144 PTAAGSATNSGYEISIRNRLVKQAAWAYLQPMSASPDSSGPHFFRRIWLRFSSQNPISSC 203

Query: 138 FGFIRSSIVPAIIRAFR 154
             F   + + + +R F+
Sbjct: 204 LRFSSQNPISSCLRFFQ 217

BLAST of Csa6G454420 vs. TrEMBL
Match: W9RPH0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018844 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 73/128 (57.03%), Postives = 93/128 (72.66%), Query Frame = 1

Query: 25  SSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSA-SASAAAVNSPTAASP 84
           S+  P  N AV+ PPPP P+N  L++ K++S SYTSLKD+LPS+ SA    +NSPT+AS 
Sbjct: 39  SASFPIENGAVAVPPPP-PLNFELIALKTTSSSYTSLKDLLPSSPSAGGGGINSPTSAS- 98

Query: 85  ANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSS 144
           A++  EISIRNRLVKQAAWAYLQPMS+S  S GP F  R  LRFS+ N + SC  FI S 
Sbjct: 99  ASAASEISIRNRLVKQAAWAYLQPMSSSPSSTGPRFLRRLWLRFSSQNVVASCLAFINSH 158

Query: 145 IVPAIIRA 152
           ++P++ RA
Sbjct: 159 VIPSLSRA 164

BLAST of Csa6G454420 vs. TrEMBL
Match: A0A0D2RBJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G236200 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-27
Identity = 78/155 (50.32%), Postives = 94/155 (60.65%), Query Frame = 1

Query: 13  PSPSLRRTTFLPSSPMPPPNPAVSPPPP--------------PSPINLALLSFKSSSQSY 72
           P+ ++RR   + +    P    +  P P              P P++L L+S K+S  SY
Sbjct: 9   PTSTIRRRNSITTPVQIPTKLTLLTPKPLQTATSLSSGSATAPLPLDLELISLKASFASY 68

Query: 73  TSLKDILPSASASAAAVNSPTAASPA-NSPYEISIRNRLVKQAAWAYLQPMSASSYSAGP 132
           TSLKDILPS    A AVNSPTAA  A NS YEISIRNRLVKQAAWAYLQPMSAS  S+G 
Sbjct: 69  TSLKDILPSP---AVAVNSPTAAGSATNSGYEISIRNRLVKQAAWAYLQPMSASPDSSGT 128

Query: 133 NFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAF 153
           +FF RF LR S+ NP  SC  FI   ++P + R F
Sbjct: 129 HFFRRFWLRLSSQNPFSSCLRFIHLKLLPRLTRLF 160

BLAST of Csa6G454420 vs. TrEMBL
Match: B9IIN8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s07330g PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 78/152 (51.32%), Postives = 100/152 (65.79%), Query Frame = 1

Query: 11  PPPSPSLRRTTFLPSSPMPPPNPAV--SPPPP-------PSPINLALLSFKSSSQSYTSL 70
           PP +P+LRR   + +S + P   ++  S  PP       PS ++++LL  KSS  SYTS+
Sbjct: 7   PPRTPTLRRRNSIATSFVIPTKLSLHTSSLPPSHLNGTLPSHLDISLLPLKSSL-SYTSI 66

Query: 71  KDILPSASASAAAVNSPTAA-SPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF 130
           KD+LPSA+     VNSPT+A S   S YEI IRNRLVKQAAWAYLQPMS+S  S+G +F 
Sbjct: 67  KDLLPSAT-----VNSPTSATSNTTSTYEIPIRNRLVKQAAWAYLQPMSSSPDSSGTHFL 126

Query: 131 HRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAF 153
            R  LR ST NPI +CFGFI   ++P+I  AF
Sbjct: 127 RRLWLRLSTKNPITACFGFISFRVIPSITNAF 152

BLAST of Csa6G454420 vs. TAIR10
Match: AT5G06280.1 (AT5G06280.1 unknown protein)

HSP 1 Score: 73.9 bits (180), Expect = 9.7e-14
Identity = 57/149 (38.26%), Postives = 79/149 (53.02%), Query Frame = 1

Query: 13  PSPSLRRTTFLPSSPM--PPPNPAVSPPPPPSPINLALLSFKSSS-QSYTSLKDILPS-- 72
           P+  LRRT  + +     PP  P      PPS  +  L+S K SS  +YTSL+DI+ S  
Sbjct: 9   PATQLRRTKSISNMTTLTPPEVPFDIASTPPSSFDYELISVKPSSFVAYTSLRDIISSPI 68

Query: 73  -ASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQP--MSASSYSAGPNFFHRFC 132
            +S +  ++N   +   + +  +ISIRNRLVKQAA +YLQP  +++S  SAG  FF R  
Sbjct: 69  NSSLNLPSINGSCSPVISTAAGDISIRNRLVKQAALSYLQPTVLTSSDDSAGSQFFRRVW 128

Query: 133 LRFSTGNPIYSCFGFIRSSIVPAIIRAFR 154
           L  S G      F F+R  +   I ++FR
Sbjct: 129 LHLSAG------FQFLR-RVFDWIFQSFR 150

BLAST of Csa6G454420 vs. TAIR10
Match: AT3G52520.1 (AT3G52520.1 unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 8.5e-10
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 1

Query: 44  INLALLSFKSSSQS----YTSLKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQ 103
           ++L L+S   SS+     YTSLKDILPS+S +  +     A + A S   I+IRNRLVKQ
Sbjct: 23  LDLELVSVNKSSEDPLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRNRLVKQ 82

Query: 104 AAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAF 153
           AA +YLQP S  + S+ P+F  R          + S F  + S+   A++R F
Sbjct: 83  AACSYLQP-STPTPSSNPSFLRR----------VSSSFIRLVSAFFDALLRIF 124

BLAST of Csa6G454420 vs. NCBI nr
Match: gi|778717611|ref|XP_011657724.1| (PREDICTED: early nodulin-20-like [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 5.8e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1

Query: 1   MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTS 60
           MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTS
Sbjct: 1   MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTS 60

Query: 61  LKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF 120
           LKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF
Sbjct: 61  LKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF 120

Query: 121 HRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF 159
           HRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF
Sbjct: 121 HRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCICF 158

BLAST of Csa6G454420 vs. NCBI nr
Match: gi|659125286|ref|XP_008462609.1| (PREDICTED: F-box only protein 11 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 4.8e-79
Identity = 150/157 (95.54%), Postives = 152/157 (96.82%), Query Frame = 1

Query: 1   MAKSSAQLTYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTS 60
           MAKS+AQLTYPPPSPSLRRTTFLPSSPMPPPN  VSPPPPPSPINLALLSFKSSSQSYTS
Sbjct: 1   MAKSAAQLTYPPPSPSLRRTTFLPSSPMPPPNADVSPPPPPSPINLALLSFKSSSQSYTS 60

Query: 61  LKDILPSASASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF 120
           LKDILP  SASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF
Sbjct: 61  LKDILP--SASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFF 120

Query: 121 HRFCLRFSTGNPIYSCFGFIRSSIVPAIIRAFRFCIC 158
           HRFCLRFSTGNPIYSCFGFI SSI+PAIIRAFRFCIC
Sbjct: 121 HRFCLRFSTGNPIYSCFGFITSSIIPAIIRAFRFCIC 155

BLAST of Csa6G454420 vs. NCBI nr
Match: gi|1009161360|ref|XP_015898854.1| (PREDICTED: uncharacterized protein LOC107432265 [Ziziphus jujuba])

HSP 1 Score: 146.0 bits (367), Expect = 5.7e-32
Identity = 79/144 (54.86%), Postives = 99/144 (68.75%), Query Frame = 1

Query: 9   TYPPPSPSLRRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSA 68
           T PP +  L  T+F      P  N  VSP PPP P++  L+S K+S  +YTSL+D++PS+
Sbjct: 37  TTPPITKPLYSTSF------PNQNGTVSPTPPP-PLDFELVSLKTSL-AYTSLRDLIPSS 96

Query: 69  SASAAAVNSPTAASPANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFS 128
                 ++SPTAAS  NS YEISIRNRLVKQAAWAYLQPMS+S  S G +FFHRF LR S
Sbjct: 97  PGGL--IHSPTAASAVNSGYEISIRNRLVKQAAWAYLQPMSSSPVSVGTHFFHRFSLRLS 156

Query: 129 TGNPIYSCFGFIRSSIVPAIIRAF 153
             NP+ +C GFIRS ++P + RAF
Sbjct: 157 AQNPVSACLGFIRSHVIPTLTRAF 170

BLAST of Csa6G454420 vs. NCBI nr
Match: gi|590632737|ref|XP_007027924.1| (COPII coat assembly protein SEC16, putative [Theobroma cacao])

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 78/137 (56.93%), Postives = 93/137 (67.88%), Query Frame = 1

Query: 18  RRTTFLPSSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSASASAAAVNS 77
           RR T L   P+   N   +     SP++L L+S K+S  SYTSLKDILPS   SA A+NS
Sbjct: 84  RRLTLLTPKPLQTANSLPNGSASSSPLDLELISLKTSLASYTSLKDILPS---SAVAINS 143

Query: 78  PTAASPA-NSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSC 137
           PTAA  A NS YEISIRNRLVKQAAWAYLQPMSAS  S+GP+FF R  LRFS+ NPI SC
Sbjct: 144 PTAAGSATNSGYEISIRNRLVKQAAWAYLQPMSASPDSSGPHFFRRIWLRFSSQNPISSC 203

Query: 138 FGFIRSSIVPAIIRAFR 154
             F   + + + +R F+
Sbjct: 204 LRFSSQNPISSCLRFFQ 217

BLAST of Csa6G454420 vs. NCBI nr
Match: gi|703131055|ref|XP_010104789.1| (hypothetical protein L484_018844 [Morus notabilis])

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 73/128 (57.03%), Postives = 93/128 (72.66%), Query Frame = 1

Query: 25  SSPMPPPNPAVSPPPPPSPINLALLSFKSSSQSYTSLKDILPSA-SASAAAVNSPTAASP 84
           S+  P  N AV+ PPPP P+N  L++ K++S SYTSLKD+LPS+ SA    +NSPT+AS 
Sbjct: 39  SASFPIENGAVAVPPPP-PLNFELIALKTTSSSYTSLKDLLPSSPSAGGGGINSPTSAS- 98

Query: 85  ANSPYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRFCLRFSTGNPIYSCFGFIRSS 144
           A++  EISIRNRLVKQAAWAYLQPMS+S  S GP F  R  LRFS+ N + SC  FI S 
Sbjct: 99  ASAASEISIRNRLVKQAAWAYLQPMSSSPSSTGPRFLRRLWLRFSSQNVVASCLAFINSH 158

Query: 145 IVPAIIRA 152
           ++P++ RA
Sbjct: 159 VIPSLSRA 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KHJ9_CUCSA4.0e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454420 PE=4 SV=1[more]
A0A061EUC6_THECC8.3e-3056.93COPII coat assembly protein SEC16, putative OS=Theobroma cacao GN=TCM_022851 PE=... [more]
W9RPH0_9ROSA1.1e-2957.03Uncharacterized protein OS=Morus notabilis GN=L484_018844 PE=4 SV=1[more]
A0A0D2RBJ9_GOSRA1.3e-2750.32Uncharacterized protein OS=Gossypium raimondii GN=B456_002G236200 PE=4 SV=1[more]
B9IIN8_POPTR1.5e-2651.32Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s07330g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G06280.19.7e-1438.26 unknown protein[more]
AT3G52520.18.5e-1039.82 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778717611|ref|XP_011657724.1|5.8e-85100.00PREDICTED: early nodulin-20-like [Cucumis sativus][more]
gi|659125286|ref|XP_008462609.1|4.8e-7995.54PREDICTED: F-box only protein 11 [Cucumis melo][more]
gi|1009161360|ref|XP_015898854.1|5.7e-3254.86PREDICTED: uncharacterized protein LOC107432265 [Ziziphus jujuba][more]
gi|590632737|ref|XP_007027924.1|1.2e-2956.93COPII coat assembly protein SEC16, putative [Theobroma cacao][more]
gi|703131055|ref|XP_010104789.1|1.6e-2957.03hypothetical protein L484_018844 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G454420.1Csa6G454420.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34569FAMILY NOT NAMEDcoord: 16..153
score: 1.5
NoneNo IPR availablePANTHERPTHR34569:SF2SUBFAMILY NOT NAMEDcoord: 16..153
score: 1.5

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa6G454420Csa3G778400Cucumber (Chinese Long) v2cucuB110