Carg03406 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03406
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ycf54 domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_005 : 1690517 .. 1693116 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTGCACTTACCTTCACAATCACAAGAGGAAGAAGAAGAAGAAGAAGGCCAAATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGAACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCTTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATTGTATCCTCCGATTCGACGGACAAGGTAATCGTTAGCTTCTGAGTTTTTTCCGCATTTCTCTTGCCTTTAATTTCTAAACTCCGACGATGCGCGTTATTGTTCATATCTAGGTATAAATTAATCGATTATCACGGGTTAGATTTTTAAAATTGTTGATTAAAATTGTTGATATCCATGGAAATCTAGGGAAATTGTATGTATTCTCGATGTCGAGACGTTTACATTAAACCGCGGATTTGATCCGAATTCGTCTTGCTTTATGTCCACCGTGTGTTTGCCCTAGATCGTTCTGGAAATTGGGGATTGTAGTAGCCAAATTCACTGGTTCTATGATCTTTCCAATGCAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTCGCTCTTGTTTCAACCAACAGTACCTGGATTACGTAAGCTACCTGTTCTTATTTTCATTCTTGGTTTTTCTTTATGACATTACATAGGTTGAATCATAAAAAAATCCCCTCACAGTGTCATTTGTTTCAAAATACTTGGAATATTGCTCTTACTTTTTCATACACTTTCAAAACTATAGTAGAAATTCTTTAGAACTTTCAAAAGATGCAACATTACCCTTAATCTTTTACAAGTGTTTTGAAACTATCTTTGGAGTAGAAATCGCTTGAATTTCGAATAAGGCTGAGATCTAGAATAGTGTGACGGTGACCTAGGGGTACTTTTCGAACCAAGGTAAACTTCAATAGTATCCTTTTTATATAATTTAGCCTATTAAATAAAGGGTGAGGACTCGACACTTACAACCTTACGAATGTGTGGGGGTGTGTGAGATCCCAAACTGGTTGGAGAGGAGAACAAAACATTCTTTAAGGGTGTTGAAATCTCTCCCTACCAACACGTTTTAAAAACCTTGAAGGGAAGCCGAAAGGGGAAAGCAAAAAATGGACAATATCTATTTGCAGTGGGCTTGAGCCGTTACAAGGTGACTTGTAACTTAGATGTACTTTTCAAATAAATGGCTATTAAATAAAGGGTGAGGACCCGACTCTTACAACCTCACGAATGCGGGCATATCAAATAAGTCCCGTTTACATCACTTGCATTGGTACATTCAGTTGTTGCAGCTCATTGATAATAGGATTCTTCATATGCGTTTCACTGCTGCTTATGTATACACTCGTAGTTTCTATTCAGTGGTGTGCTTAGAGTTACAGTAGGAAAAGGGACATGAAAATGGTTGCAGCCACTGTAAAAGGACCTCAAAACTCGAACATTCTTTCATGTATGCCAACAATGTGTTTGCTTGACTGCGCCATCTTGGTCCCCTTTTCTTGTTGATATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTCGCTCCCTATTCCAAGTATGAATACGGATGGTGGGAGGCTTTCTTGCCGCCGGTGGCAAAAACTGAAGCAAAAGTATAAGCTGTGTATGTTGCTTCGTTTCTTTAGTACGCCCTTTTTTTGTTTACCCTTTCTAATCAAGTATGAATTTTGATTGTGCGAGGATTTCACAGAACATTTGGAGTTGAAGGTAGTTTTGTTTTGGTAATCTAATTGTATTTGAGAGGCTCGATATCTTCCGTGTGGGTCAATATCTGCAATGTAGTTCGTCGAACGATGAACGTAGTTCGAATGTCTTTTTATGTCGATTTTCTTTAATGGTTTAGCAAGTTTGTGCGTTGAAATCTGCTCACGAAAAAAATGATCTGTTTTCTTAAGGACGACCGCTAACTTATTCTATCATGAACGAGAGGTTTAAGAACATTTCACTAATCTGTTTTTCATTACAGCTTACGTGCTAATCATCTAAACTAATACTCTAATACATAATTGAAGCATTCTATCAAAGCATAATTTAATTAATTACGAGAAATAGTAGTGTTGTTAATTTATATTGTTAATTTTTATGAAATAACAAGCTATGAATTAATGCGAAAAATTAAAAAATATATATATGTTTCATGCAAAAATTAAGAACTGTGATATAATATTTCAAAGCTTAGATTGTTCTAATGTTTATACAAATTAAGA

mRNA sequence

TTCTGCACTTACCTTCACAATCACAAGAGGAAGAAGAAGAAGAAGAAGGCCAAATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGAACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCTTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATTGTATCCTCCGATTCGACGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTCGCTCTTGTTTCAACCAACAGTACCTGGATTACGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTCGCTCCCTATTCCAAGTATGAATACGGATGGTGGGAGGCTTTCTTGCCGCCGGTGGCAAAAACTGAAGCAAAAGTATAAGCTGTGTATGTTGCTTCGTTTCTTTAGTACGCCCTTTTTTTGTTTACCCTTTCTAATCAAGTATGAATTTTGATTGTGCGAGGATTTCACAGAACATTTGGAGTTGAAGGTAGTTTTGTTTTGGTAATCTAATTGTATTTGAGAGGCTCGATATCTTCCGTGTGGGTCAATATCTGCAATGTAGTTCGTCGAACGATGAACGTAGTTCGAATGTCTTTTTATGTCGATTTTCTTTAATGGTTTAGCAAGTTTGTGCGTTGAAATCTGCTCACGAAAAAAATGATCTGTTTTCTTAAGGACGACCGCTAACTTATTCTATCATGAACGAGAGGTTTAAGAACATTTCACTAATCTGTTTTTCATTACAGCTTACGTGCTAATCATCTAAACTAATACTCTAATACATAATTGAAGCATTCTATCAAAGCATAATTTAATTAATTACGAGAAATAGTAGTGTTGTTAATTTATATTGTTAATTTTTATGAAATAACAAGCTATGAATTAATGCGAAAAATTAAAAAATATATATATGTTTCATGCAAAAATTAAGAACTGTGATATAATATTTCAAAGCTTAGATTGTTCTAATGTTTATACAAATTAAGA

Coding sequence (CDS)

ATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGAACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCTTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATTGTATCCTCCGATTCGACGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTCGCTCTTGTTTCAACCAACAGTACCTGGATTACGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTCGCTCCCTATTCCAAGTATGAATACGGATGGTGGGAGGCTTTCTTGCCGCCGGTGGCAAAAACTGAAGCAAAAGTATAA

Protein sequence

MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV

Homology

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BLAST of Carg03406 vs. NCBI nr
Match: XP_022944632.1 (uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo] >XP_023512537.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.0 bits (1146), Expect = 7.6e-122
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
           HRGSSLSLRFNTAIAAVNSDQIVSSDS DKEESNKYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK EAKV
Sbjct: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 232

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BLAST of Carg03406 vs. NCBI nr
Match: XP_022986936.1 (uncharacterized protein LOC111484525 [Cucurbita maxima])

HSP 1 Score: 435.3 bits (1118), Expect = 1.3e-118
Identity = 226/233 (97.00%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSS+FF S
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSSFFLS 60

Query: 61  HRGSSLS-LRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFE 120
           HRGSSLS LRF TA+AAVNSDQIVSSDS DKEESNKYYFLVANAKFMLDEEEHFKELLFE
Sbjct: 61  HRGSSLSFLRFKTAVAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFE 120

Query: 121 RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA 180
           RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA
Sbjct: 121 RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA 180

Query: 181 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK EAKV
Sbjct: 181 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 233

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BLAST of Carg03406 vs. NCBI nr
Match: XP_022149576.1 (uncharacterized protein LOC111017973 [Momordica charantia])

HSP 1 Score: 377.5 bits (968), Expect = 3.3e-101
Identity = 194/232 (83.62%), Postives = 207/232 (89.22%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTVNLVMGSSSAAM TP Q AAVKSLAS++   H HCRT SLPLG A+ASGS++ F  
Sbjct: 1   MLGTVNLVMGSSSAAMVTPAQFAAVKSLASARASHHTHCRTLSLPLGFANASGSTSCFLP 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
            RGSS S  F+TAIAAVNS+Q+VSSD  DK+E+NKYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SRGSSPSSPFSTAIAAVNSNQLVSSDPADKQEANKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LR YGERNKEQDFWLVIEPKFL+KFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE
Sbjct: 121 LRYYGERNKEQDFWLVIEPKFLEKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANS EEA+AS PTN+EFEKPEKWVAPY KYEYGWWE FLPPV K EAKV
Sbjct: 181 SYEANSFEEAMASNPTNIEFEKPEKWVAPYPKYEYGWWETFLPPVTKAEAKV 232

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BLAST of Carg03406 vs. NCBI nr
Match: XP_022947359.1 (uncharacterized protein LOC111451246 [Cucurbita moschata])

HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96
Identity = 190/231 (82.25%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTVNLVMGSSSAAM T TQC A+KSLAS +IG H+HCR  SLP GL SASG S+ F +
Sbjct: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
            RGSS    FNTAIAAVN DQIVSSDS D++ESNKYYF+VANAKFMLDEEEHF+ELLFER
Sbjct: 61  SRGSS---PFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LR Y ER+KEQDFWLVIEPKFL++FPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE
Sbjct: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAK 232
           SYEA+SLE+ALAS PTN+EFEKPEKWVAPY KYEYGWWE FLPPV KTEA+
Sbjct: 181 SYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 227

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BLAST of Carg03406 vs. NCBI nr
Match: XP_008456263.1 (PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo])

HSP 1 Score: 349.7 bits (896), Expect = 7.4e-93
Identity = 192/232 (82.76%), Postives = 199/232 (85.78%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGT NLVMGSSSAA+AT T  AAVKSL +S IG HN   T SLPL L S S  S+ F S
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
              SSLS  FNTAIAAVN      SDS DK+ES KYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SPLSSLSSPFNTAIAAVN------SDSADKQESIKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRNYGERNKEQDFWLVIEPKFLDKFPNITKRL+RPAVALVST+STWITFMKLRLDRVLAE
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANS+EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV K EAKV
Sbjct: 181 SYEANSIEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

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BLAST of Carg03406 vs. TAIR10
Match: AT5G58250.1 (unknown protein)

HSP 1 Score: 222.2 bits (565), Expect = 3.2e-58
Identity = 118/180 (65.56%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 51  ASGSSAFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEE 110
           +S S +  SSH  SS    F TA  ++         S +K ES KY+FLVANAKFMLDEE
Sbjct: 40  SSPSLSLPSSHFSSS----FKTAATSIE-----QQSSVNKGESTKYHFLVANAKFMLDEE 99

Query: 111 EHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFM 170
           EHF+E LFERLR +GER   QDFWLVIEPKFLD FP IT+RL+RPAVALVSTN TWITFM
Sbjct: 100 EHFQEQLFERLRYFGERELVQDFWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWITFM 159

Query: 171 KLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEA 230
           KLRLDRVL +S+EA SL+EALAS PT LEF+KP+ WVAPY KYE GWW+ FLP V +  A
Sbjct: 160 KLRLDRVLYDSFEATSLDEALASNPTTLEFDKPKNWVAPYPKYEPGWWDTFLPKVTQESA 210

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BLAST of Carg03406 vs. Swiss-Prot
Match: sp|P72777|YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.4e-15
Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 96  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRP 155
           YY+ +A+ KF+L EEE F+E+L ER R+YGE+NKE DFW VI+P FL+       + + P
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 90

Query: 156 A--VALVSTNSTWITFMKLRLDRVLAESYEA--NSLEEALAS 194
              VA+VSTN ++I ++KLRL+ VL   +EA  +++ + LAS
Sbjct: 91  EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131

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BLAST of Carg03406 vs. Swiss-Prot
Match: sp|P51204|YCF54_PORPU (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.3e-10
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 96  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLD-----KFPNITK 155
           YYF +A+  F+L EE   +E+  ER+  Y   NKE DFWL+  PKFL+     KF N+  
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNL-- 63

Query: 156 RLQRPAVALVSTNSTWITFMKLRLDRVLAESYE 184
            +   A+A++STNS +I ++KLR+  V    +E
Sbjct: 64  -VPNEAIAIISTNSIFINWLKLRIGYVCIGQFE 92

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BLAST of Carg03406 vs. Swiss-Prot
Match: sp|Q1XDT3|YCF54_PYRYE (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-08
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 96  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKR--LQ 155
           YYF +A+  F+L  +E  +E+  ER+  Y   NK  DFWL+  P FL+K   I+ +  + 
Sbjct: 4   YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 63

Query: 156 RPAVALVSTNSTWITFMKLRLDRVLAESYEAN 186
           + AVA++STN  +I ++KLR+  +    +E N
Sbjct: 64  KDAVAIISTNPIFINWLKLRIGYICIGQFEDN 94

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BLAST of Carg03406 vs. TrEMBL
Match: tr|A0A1S3C2E4|A0A1S3C2E4_CUCME (uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 4.9e-93
Identity = 192/232 (82.76%), Postives = 199/232 (85.78%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGT NLVMGSSSAA+AT T  AAVKSL +S IG HN   T SLPL L S S  S+ F S
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
              SSLS  FNTAIAAVN      SDS DK+ES KYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SPLSSLSSPFNTAIAAVN------SDSADKQESIKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRNYGERNKEQDFWLVIEPKFLDKFPNITKRL+RPAVALVST+STWITFMKLRLDRVLAE
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANS+EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV K EAKV
Sbjct: 181 SYEANSIEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

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BLAST of Carg03406 vs. TrEMBL
Match: tr|A0A0A0KB63|A0A0A0KB63_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133820 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 6.0e-91
Identity = 184/232 (79.31%), Postives = 197/232 (84.91%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTV+LVMGSSSAA+AT T   A+KSL +S+IG HNH  T S P  L S S  ++ F S
Sbjct: 1   MLGTVSLVMGSSSAAVATSTHFPALKSLPTSRIGHHNHFPTLSFPFVLPSTSIFTSSFLS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
              SSLS  FNTAIAAVN      SDS DK+ESNKYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SPLSSLSSPFNTAIAAVN------SDSADKQESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRN+ ERNKEQ+FWLVIEPKFLDKFPNITKRL+RPAVALVST+STWITFMKLRLDRVLAE
Sbjct: 121 LRNFSERNKEQNFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANS+EEALASTPTNLEFEKPE WVAPYSKYEYGWWEAFLPP  K EAKV
Sbjct: 181 SYEANSIEEALASTPTNLEFEKPENWVAPYSKYEYGWWEAFLPPATKAEAKV 226

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BLAST of Carg03406 vs. TrEMBL
Match: tr|A0A151R811|A0A151R811_CAJCA (Uncharacterized protein ycf54 OS=Cajanus cajan OX=3821 GN=KK1_039959 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.9e-73
Identity = 155/232 (66.81%), Postives = 176/232 (75.86%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS-A 60
           MLG   L +GSSS  +A         +  +S  G   H    RT SLP+ L S +  +  
Sbjct: 1   MLGVATLTLGSSSTLVAQNHAQQHPTTTLASATGTRRHTVPNRTHSLPMSLVSPTNQNCT 60

Query: 61  FFSSHRGSSLSLR-FNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKE 120
           F SS  G +   R F TA+A+V+SDQ+ SSD   K+ESNKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  FLSSFSGPTTHARPFTTAVASVDSDQLNSSDPPTKDESNKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLD 180
            LFERLR +GERNKEQDFWLVIEPKFLDKFPNITKRL+RPAVALVSTN TWITFMKLRLD
Sbjct: 121 QLFERLRLFGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWITFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK 228
           RVL++S+EA SLEEALA  PTNLEFEKPEKWVAPY KYE+GWWE FLPPV K
Sbjct: 181 RVLSDSFEAESLEEALAFNPTNLEFEKPEKWVAPYPKYEFGWWEPFLPPVQK 232

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BLAST of Carg03406 vs. TrEMBL
Match: tr|A0A0L9VCG0|A0A0L9VCG0_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g141000 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 5.8e-70
Identity = 151/230 (65.65%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMA-TPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS- 60
           MLG   L +GSS+A +A    Q     +LAS+  G   H    RT+S P+ L S +  S 
Sbjct: 1   MLGMATLTLGSSTAMVAQNHAQQHHATTLASAN-GHRRHSVSNRTYSSPMSLVSPTNKSF 60

Query: 61  AFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKE 120
            F SS + S  +  F TA+A+V+SDQ+ SSD   K E+NKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  TFLSSFKESPRARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLD 180
            LFER+R +GERN+EQDFWLVIEPKFLDKFPNITKRL+RPAVALVSTN TWI FMKLRLD
Sbjct: 121 QLFERIRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWIKFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV 226
           RVL++S+EA SLEEALA TPT+L+FEKPEKWVAPY KYE GWWE FLPPV
Sbjct: 181 RVLSDSFEAESLEEALAFTPTDLKFEKPEKWVAPYPKYESGWWEPFLPPV 229

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BLAST of Carg03406 vs. TrEMBL
Match: tr|A0A0S3S5Q8|A0A0S3S5Q8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G163900 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 5.8e-70
Identity = 151/230 (65.65%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMA-TPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS- 60
           MLG   L +GSS+A +A    Q     +LAS+  G   H    RT+S P+ L S +  S 
Sbjct: 1   MLGMATLTLGSSTAMVAQNHAQQHHATTLASAN-GHRRHSVSNRTYSSPMSLVSPTNKSF 60

Query: 61  AFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKE 120
            F SS + S  +  F TA+A+V+SDQ+ SSD   K E+NKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  TFLSSFKESPRARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLD 180
            LFER+R +GERN+EQDFWLVIEPKFLDKFPNITKRL+RPAVALVSTN TWI FMKLRLD
Sbjct: 121 QLFERIRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWIKFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV 226
           RVL++S+EA SLEEALA TPT+L+FEKPEKWVAPY KYE GWWE FLPPV
Sbjct: 181 RVLSDSFEAESLEEALAFTPTDLKFEKPEKWVAPYPKYESGWWEPFLPPV 229

The following BLAST results are available for this feature:

BLAST of Carg03406 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944632.1	7.6e-122	99.14	uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 unchar...	[more]
XP_022986936.1	1.3e-118	97.00	uncharacterized protein LOC111484525 [Cucurbita maxima]	[more]
XP_022149576.1	3.3e-101	83.62	uncharacterized protein LOC111017973 [Momordica charantia]	[more]
XP_022947359.1	1.1e-96	82.25	uncharacterized protein LOC111451246 [Cucurbita moschata]	[more]
XP_008456263.1	7.4e-93	82.76	PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo]	[more]

BLAST of Carg03406 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58250.1	3.2e-58	65.56	unknown protein	[more]

BLAST of Carg03406 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P72777\|YC54L_SYNY3	9.4e-15	47.06	Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
sp\|P51204\|YCF54_PORPU	5.3e-10	40.86	Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1	[more]
sp\|Q1XDT3\|YCF54_PYRYE	2.2e-08	36.96	Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1	[more]

BLAST of Carg03406 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2E4\|A0A1S3C2E4_CUCME	4.9e-93	82.76	uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=...	[more]
tr\|A0A0A0KB63\|A0A0A0KB63_CUCSA	6.0e-91	79.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133820 PE=4 SV=1	[more]
tr\|A0A151R811\|A0A151R811_CAJCA	1.9e-73	66.81	Uncharacterized protein ycf54 OS=Cajanus cajan OX=3821 GN=KK1_039959 PE=4 SV=1	[more]
tr\|A0A0L9VCG0\|A0A0L9VCG0_PHAAN	5.8e-70	65.65	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g141000 PE...	[more]
tr\|A0A0S3S5Q8\|A0A0S3S5Q8_PHAAN	5.8e-70	65.65	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019616	Uncharacterised_Ycf54
IPR038409	Ycf54-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03406-RA	Carg03406-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038409	Ycf54-like superfamily	GENE3D	G3DSA:3.30.70.1860		coord: 93..205 e-value: 1.1E-40 score: 140.0
IPR019616	Uncharacterised protein family Ycf54	PFAM	PF10674	Ycf54	coord: 95..184 e-value: 2.2E-35 score: 120.7
IPR019616	Uncharacterised protein family Ycf54	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 30..228
None	No IPR available	PANTHER	PTHR35319:SF2	SUBFAMILY NOT NAMED	coord: 30..228

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03406	Cla013429	Watermelon (97103) v1	carwmB0330
Carg03406	Csa6G133820	Cucumber (Chinese Long) v2	carcuB0367
Carg03406	MELO3C019598	Melon (DHL92) v3.5.1	carmeB0339
Carg03406	ClCG02G018930	Watermelon (Charleston Gray)	carwcgB0327
Carg03406	CSPI06G10810	Wild cucumber (PI 183967)	carcpiB0370
Carg03406	Cucsa.118800	Cucumber (Gy14) v1	carcgyB0391
Carg03406	CmaCh02G006860	Cucurbita maxima (Rimu)	carcmaB0477
Carg03406	CmaCh20G002970	Cucurbita maxima (Rimu)	carcmaB0473
Carg03406	CmoCh02G006840	Cucurbita moschata (Rifu)	carcmoB0467
Carg03406	CmoCh20G003230	Cucurbita moschata (Rifu)	carcmoB0464
Carg03406	Lsi10G014930	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03406	Cp4.1LG16g07010	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03406	Cp4.1LG05g10160	Cucurbita pepo (Zucchini)	carcpeB0475
Carg03406	CsGy6G010900	Cucumber (Gy14) v2	carcgybB0347
Carg03406	MELO3C019598.2	Melon (DHL92) v3.6.1	carmedB0347
Carg03406	CsaV3_6G013260	Cucumber (Chinese Long) v3	carcucB0370
Carg03406	Cla97C02G044860	Watermelon (97103) v2	carwmbB0346
Carg03406	Bhi10G000706	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03406	Carg11748	Silver-seed gourd	carcarB369

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03406	Silver-seed gourd	carcarB368
Carg03406	Cucurbita maxima (Rimu)	carcmaB0476