Carg03406-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03406-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ycf54 domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_005 : 1690517 .. 1693116 (-)
Sequence length	1361

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTGCACTTACCTTCACAATCACAAGAGGAAGAAGAAGAAGAAGAAGGCCAAATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGAACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCTTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATTGTATCCTCCGATTCGACGGACAAGGTAATCGTTAGCTTCTGAGTTTTTTCCGCATTTCTCTTGCCTTTAATTTCTAAACTCCGACGATGCGCGTTATTGTTCATATCTAGGTATAAATTAATCGATTATCACGGGTTAGATTTTTAAAATTGTTGATTAAAATTGTTGATATCCATGGAAATCTAGGGAAATTGTATGTATTCTCGATGTCGAGACGTTTACATTAAACCGCGGATTTGATCCGAATTCGTCTTGCTTTATGTCCACCGTGTGTTTGCCCTAGATCGTTCTGGAAATTGGGGATTGTAGTAGCCAAATTCACTGGTTCTATGATCTTTCCAATGCAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTCGCTCTTGTTTCAACCAACAGTACCTGGATTACGTAAGCTACCTGTTCTTATTTTCATTCTTGGTTTTTCTTTATGACATTACATAGGTTGAATCATAAAAAAATCCCCTCACAGTGTCATTTGTTTCAAAATACTTGGAATATTGCTCTTACTTTTTCATACACTTTCAAAACTATAGTAGAAATTCTTTAGAACTTTCAAAAGATGCAACATTACCCTTAATCTTTTACAAGTGTTTTGAAACTATCTTTGGAGTAGAAATCGCTTGAATTTCGAATAAGGCTGAGATCTAGAATAGTGTGACGGTGACCTAGGGGTACTTTTCGAACCAAGGTAAACTTCAATAGTATCCTTTTTATATAATTTAGCCTATTAAATAAAGGGTGAGGACTCGACACTTACAACCTTACGAATGTGTGGGGGTGTGTGAGATCCCAAACTGGTTGGAGAGGAGAACAAAACATTCTTTAAGGGTGTTGAAATCTCTCCCTACCAACACGTTTTAAAAACCTTGAAGGGAAGCCGAAAGGGGAAAGCAAAAAATGGACAATATCTATTTGCAGTGGGCTTGAGCCGTTACAAGGTGACTTGTAACTTAGATGTACTTTTCAAATAAATGGCTATTAAATAAAGGGTGAGGACCCGACTCTTACAACCTCACGAATGCGGGCATATCAAATAAGTCCCGTTTACATCACTTGCATTGGTACATTCAGTTGTTGCAGCTCATTGATAATAGGATTCTTCATATGCGTTTCACTGCTGCTTATGTATACACTCGTAGTTTCTATTCAGTGGTGTGCTTAGAGTTACAGTAGGAAAAGGGACATGAAAATGGTTGCAGCCACTGTAAAAGGACCTCAAAACTCGAACATTCTTTCATGTATGCCAACAATGTGTTTGCTTGACTGCGCCATCTTGGTCCCCTTTTCTTGTTGATATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTCGCTCCCTATTCCAAGTATGAATACGGATGGTGGGAGGCTTTCTTGCCGCCGGTGGCAAAAACTGAAGCAAAAGTATAAGCTGTGTATGTTGCTTCGTTTCTTTAGTACGCCCTTTTTTTGTTTACCCTTTCTAATCAAGTATGAATTTTGATTGTGCGAGGATTTCACAGAACATTTGGAGTTGAAGGTAGTTTTGTTTTGGTAATCTAATTGTATTTGAGAGGCTCGATATCTTCCGTGTGGGTCAATATCTGCAATGTAGTTCGTCGAACGATGAACGTAGTTCGAATGTCTTTTTATGTCGATTTTCTTTAATGGTTTAGCAAGTTTGTGCGTTGAAATCTGCTCACGAAAAAAATGATCTGTTTTCTTAAGGACGACCGCTAACTTATTCTATCATGAACGAGAGGTTTAAGAACATTTCACTAATCTGTTTTTCATTACAGCTTACGTGCTAATCATCTAAACTAATACTCTAATACATAATTGAAGCATTCTATCAAAGCATAATTTAATTAATTACGAGAAATAGTAGTGTTGTTAATTTATATTGTTAATTTTTATGAAATAACAAGCTATGAATTAATGCGAAAAATTAAAAAATATATATATGTTTCATGCAAAAATTAAGAACTGTGATATAATATTTCAAAGCTTAGATTGTTCTAATGTTTATACAAATTAAGA

mRNA sequence

TTCTGCACTTACCTTCACAATCACAAGAGGAAGAAGAAGAAGAAGAAGGCCAAATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGAACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCTTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATTGTATCCTCCGATTCGACGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTCGCTCTTGTTTCAACCAACAGTACCTGGATTACGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTCGCTCCCTATTCCAAGTATGAATACGGATGGTGGGAGGCTTTCTTGCCGCCGGTGGCAAAAACTGAAGCAAAAGTATAAGCTGTGTATGTTGCTTCGTTTCTTTAGTACGCCCTTTTTTTGTTTACCCTTTCTAATCAAGTATGAATTTTGATTGTGCGAGGATTTCACAGAACATTTGGAGTTGAAGGTAGTTTTGTTTTGGTAATCTAATTGTATTTGAGAGGCTCGATATCTTCCGTGTGGGTCAATATCTGCAATGTAGTTCGTCGAACGATGAACGTAGTTCGAATGTCTTTTTATGTCGATTTTCTTTAATGGTTTAGCAAGTTTGTGCGTTGAAATCTGCTCACGAAAAAAATGATCTGTTTTCTTAAGGACGACCGCTAACTTATTCTATCATGAACGAGAGGTTTAAGAACATTTCACTAATCTGTTTTTCATTACAGCTTACGTGCTAATCATCTAAACTAATACTCTAATACATAATTGAAGCATTCTATCAAAGCATAATTTAATTAATTACGAGAAATAGTAGTGTTGTTAATTTATATTGTTAATTTTTATGAAATAACAAGCTATGAATTAATGCGAAAAATTAAAAAATATATATATGTTTCATGCAAAAATTAAGAACTGTGATATAATATTTCAAAGCTTAGATTGTTCTAATGTTTATACAAATTAAGA

Coding sequence (CDS)

ATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGAACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCTTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATTGTATCCTCCGATTCGACGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTCGCTCTTGTTTCAACCAACAGTACCTGGATTACGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTCGCTCCCTATTCCAAGTATGAATACGGATGGTGGGAGGCTTTCTTGCCGCCGGTGGCAAAAACTGAAGCAAAAGTATAA

Protein sequence

MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV

Homology

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BLAST of Carg03406-RA vs. NCBI nr
Match: XP_022944632.1 (uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo] >XP_023512537.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.0 bits (1146), Expect = 7.6e-122
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
           HRGSSLSLRFNTAIAAVNSDQIVSSDS DKEESNKYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK EAKV
Sbjct: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 232

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BLAST of Carg03406-RA vs. NCBI nr
Match: XP_022986936.1 (uncharacterized protein LOC111484525 [Cucurbita maxima])

HSP 1 Score: 435.3 bits (1118), Expect = 1.3e-118
Identity = 226/233 (97.00%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSS+FF S
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSSFFLS 60

Query: 61  HRGSSLS-LRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFE 120
           HRGSSLS LRF TA+AAVNSDQIVSSDS DKEESNKYYFLVANAKFMLDEEEHFKELLFE
Sbjct: 61  HRGSSLSFLRFKTAVAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFE 120

Query: 121 RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA 180
           RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA
Sbjct: 121 RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA 180

Query: 181 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK EAKV
Sbjct: 181 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 233

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BLAST of Carg03406-RA vs. NCBI nr
Match: XP_022149576.1 (uncharacterized protein LOC111017973 [Momordica charantia])

HSP 1 Score: 377.5 bits (968), Expect = 3.3e-101
Identity = 194/232 (83.62%), Postives = 207/232 (89.22%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTVNLVMGSSSAAM TP Q AAVKSLAS++   H HCRT SLPLG A+ASGS++ F  
Sbjct: 1   MLGTVNLVMGSSSAAMVTPAQFAAVKSLASARASHHTHCRTLSLPLGFANASGSTSCFLP 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
            RGSS S  F+TAIAAVNS+Q+VSSD  DK+E+NKYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SRGSSPSSPFSTAIAAVNSNQLVSSDPADKQEANKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LR YGERNKEQDFWLVIEPKFL+KFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE
Sbjct: 121 LRYYGERNKEQDFWLVIEPKFLEKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANS EEA+AS PTN+EFEKPEKWVAPY KYEYGWWE FLPPV K EAKV
Sbjct: 181 SYEANSFEEAMASNPTNIEFEKPEKWVAPYPKYEYGWWETFLPPVTKAEAKV 232

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BLAST of Carg03406-RA vs. NCBI nr
Match: XP_022947359.1 (uncharacterized protein LOC111451246 [Cucurbita moschata])

HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96
Identity = 190/231 (82.25%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTVNLVMGSSSAAM T TQC A+KSLAS +IG H+HCR  SLP GL SASG S+ F +
Sbjct: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
            RGSS    FNTAIAAVN DQIVSSDS D++ESNKYYF+VANAKFMLDEEEHF+ELLFER
Sbjct: 61  SRGSS---PFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LR Y ER+KEQDFWLVIEPKFL++FPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE
Sbjct: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAK 232
           SYEA+SLE+ALAS PTN+EFEKPEKWVAPY KYEYGWWE FLPPV KTEA+
Sbjct: 181 SYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 227

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BLAST of Carg03406-RA vs. NCBI nr
Match: XP_008456263.1 (PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo])

HSP 1 Score: 349.7 bits (896), Expect = 7.4e-93
Identity = 192/232 (82.76%), Postives = 199/232 (85.78%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGT NLVMGSSSAA+AT T  AAVKSL +S IG HN   T SLPL L S S  S+ F S
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
              SSLS  FNTAIAAVN      SDS DK+ES KYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SPLSSLSSPFNTAIAAVN------SDSADKQESIKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRNYGERNKEQDFWLVIEPKFLDKFPNITKRL+RPAVALVST+STWITFMKLRLDRVLAE
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANS+EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV K EAKV
Sbjct: 181 SYEANSIEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

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BLAST of Carg03406-RA vs. TAIR10
Match: AT5G58250.1 (unknown protein)

HSP 1 Score: 222.2 bits (565), Expect = 3.2e-58
Identity = 118/180 (65.56%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 51  ASGSSAFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEE 110
           +S S +  SSH  SS    F TA  ++         S +K ES KY+FLVANAKFMLDEE
Sbjct: 40  SSPSLSLPSSHFSSS----FKTAATSIE-----QQSSVNKGESTKYHFLVANAKFMLDEE 99

Query: 111 EHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFM 170
           EHF+E LFERLR +GER   QDFWLVIEPKFLD FP IT+RL+RPAVALVSTN TWITFM
Sbjct: 100 EHFQEQLFERLRYFGERELVQDFWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWITFM 159

Query: 171 KLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEA 230
           KLRLDRVL +S+EA SL+EALAS PT LEF+KP+ WVAPY KYE GWW+ FLP V +  A
Sbjct: 160 KLRLDRVLYDSFEATSLDEALASNPTTLEFDKPKNWVAPYPKYEPGWWDTFLPKVTQESA 210

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BLAST of Carg03406-RA vs. Swiss-Prot
Match: sp|P72777|YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.4e-15
Identity = 48/102 (47.06%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 96  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRP 155
           YY+ +A+ KF+L EEE F+E+L ER R+YGE+NKE DFW VI+P FL+       + + P
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 90

Query: 156 A--VALVSTNSTWITFMKLRLDRVLAESYEA--NSLEEALAS 194
              VA+VSTN ++I ++KLRL+ VL   +EA  +++ + LAS
Sbjct: 91  EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131

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BLAST of Carg03406-RA vs. Swiss-Prot
Match: sp|P51204|YCF54_PORPU (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.3e-10
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 96  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLD-----KFPNITK 155
           YYF +A+  F+L EE   +E+  ER+  Y   NKE DFWL+  PKFL+     KF N+  
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNL-- 63

Query: 156 RLQRPAVALVSTNSTWITFMKLRLDRVLAESYE 184
            +   A+A++STNS +I ++KLR+  V    +E
Sbjct: 64  -VPNEAIAIISTNSIFINWLKLRIGYVCIGQFE 92

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BLAST of Carg03406-RA vs. Swiss-Prot
Match: sp|Q1XDT3|YCF54_PYRYE (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-08
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 96  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKR--LQ 155
           YYF +A+  F+L  +E  +E+  ER+  Y   NK  DFWL+  P FL+K   I+ +  + 
Sbjct: 4   YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 63

Query: 156 RPAVALVSTNSTWITFMKLRLDRVLAESYEAN 186
           + AVA++STN  +I ++KLR+  +    +E N
Sbjct: 64  KDAVAIISTNPIFINWLKLRIGYICIGQFEDN 94

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BLAST of Carg03406-RA vs. TrEMBL
Match: tr|A0A1S3C2E4|A0A1S3C2E4_CUCME (uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 4.9e-93
Identity = 192/232 (82.76%), Postives = 199/232 (85.78%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGT NLVMGSSSAA+AT T  AAVKSL +S IG HN   T SLPL L S S  S+ F S
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
              SSLS  FNTAIAAVN      SDS DK+ES KYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SPLSSLSSPFNTAIAAVN------SDSADKQESIKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRNYGERNKEQDFWLVIEPKFLDKFPNITKRL+RPAVALVST+STWITFMKLRLDRVLAE
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANS+EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV K EAKV
Sbjct: 181 SYEANSIEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

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BLAST of Carg03406-RA vs. TrEMBL
Match: tr|A0A0A0KB63|A0A0A0KB63_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133820 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 6.0e-91
Identity = 184/232 (79.31%), Postives = 197/232 (84.91%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTV+LVMGSSSAA+AT T   A+KSL +S+IG HNH  T S P  L S S  ++ F S
Sbjct: 1   MLGTVSLVMGSSSAAVATSTHFPALKSLPTSRIGHHNHFPTLSFPFVLPSTSIFTSSFLS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
              SSLS  FNTAIAAVN      SDS DK+ESNKYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SPLSSLSSPFNTAIAAVN------SDSADKQESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRN+ ERNKEQ+FWLVIEPKFLDKFPNITKRL+RPAVALVST+STWITFMKLRLDRVLAE
Sbjct: 121 LRNFSERNKEQNFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 233
           SYEANS+EEALASTPTNLEFEKPE WVAPYSKYEYGWWEAFLPP  K EAKV
Sbjct: 181 SYEANSIEEALASTPTNLEFEKPENWVAPYSKYEYGWWEAFLPPATKAEAKV 226

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BLAST of Carg03406-RA vs. TrEMBL
Match: tr|A0A151R811|A0A151R811_CAJCA (Uncharacterized protein ycf54 OS=Cajanus cajan OX=3821 GN=KK1_039959 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.9e-73
Identity = 155/232 (66.81%), Postives = 176/232 (75.86%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS-A 60
           MLG   L +GSSS  +A         +  +S  G   H    RT SLP+ L S +  +  
Sbjct: 1   MLGVATLTLGSSSTLVAQNHAQQHPTTTLASATGTRRHTVPNRTHSLPMSLVSPTNQNCT 60

Query: 61  FFSSHRGSSLSLR-FNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKE 120
           F SS  G +   R F TA+A+V+SDQ+ SSD   K+ESNKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  FLSSFSGPTTHARPFTTAVASVDSDQLNSSDPPTKDESNKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLD 180
            LFERLR +GERNKEQDFWLVIEPKFLDKFPNITKRL+RPAVALVSTN TWITFMKLRLD
Sbjct: 121 QLFERLRLFGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWITFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK 228
           RVL++S+EA SLEEALA  PTNLEFEKPEKWVAPY KYE+GWWE FLPPV K
Sbjct: 181 RVLSDSFEAESLEEALAFNPTNLEFEKPEKWVAPYPKYEFGWWEPFLPPVQK 232

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BLAST of Carg03406-RA vs. TrEMBL
Match: tr|A0A0L9VCG0|A0A0L9VCG0_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g141000 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 5.8e-70
Identity = 151/230 (65.65%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMA-TPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS- 60
           MLG   L +GSS+A +A    Q     +LAS+  G   H    RT+S P+ L S +  S 
Sbjct: 1   MLGMATLTLGSSTAMVAQNHAQQHHATTLASAN-GHRRHSVSNRTYSSPMSLVSPTNKSF 60

Query: 61  AFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKE 120
            F SS + S  +  F TA+A+V+SDQ+ SSD   K E+NKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  TFLSSFKESPRARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLD 180
            LFER+R +GERN+EQDFWLVIEPKFLDKFPNITKRL+RPAVALVSTN TWI FMKLRLD
Sbjct: 121 QLFERIRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWIKFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV 226
           RVL++S+EA SLEEALA TPT+L+FEKPEKWVAPY KYE GWWE FLPPV
Sbjct: 181 RVLSDSFEAESLEEALAFTPTDLKFEKPEKWVAPYPKYESGWWEPFLPPV 229

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BLAST of Carg03406-RA vs. TrEMBL
Match: tr|A0A0S3S5Q8|A0A0S3S5Q8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G163900 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 5.8e-70
Identity = 151/230 (65.65%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMA-TPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS- 60
           MLG   L +GSS+A +A    Q     +LAS+  G   H    RT+S P+ L S +  S 
Sbjct: 1   MLGMATLTLGSSTAMVAQNHAQQHHATTLASAN-GHRRHSVSNRTYSSPMSLVSPTNKSF 60

Query: 61  AFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKE 120
            F SS + S  +  F TA+A+V+SDQ+ SSD   K E+NKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  TFLSSFKESPRARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLD 180
            LFER+R +GERN+EQDFWLVIEPKFLDKFPNITKRL+RPAVALVSTN TWI FMKLRLD
Sbjct: 121 QLFERIRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWIKFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV 226
           RVL++S+EA SLEEALA TPT+L+FEKPEKWVAPY KYE GWWE FLPPV
Sbjct: 181 RVLSDSFEAESLEEALAFTPTDLKFEKPEKWVAPYPKYESGWWEPFLPPV 229

The following BLAST results are available for this feature:

BLAST of Carg03406-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944632.1	7.6e-122	99.14	uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 unchar...	[more]
XP_022986936.1	1.3e-118	97.00	uncharacterized protein LOC111484525 [Cucurbita maxima]	[more]
XP_022149576.1	3.3e-101	83.62	uncharacterized protein LOC111017973 [Momordica charantia]	[more]
XP_022947359.1	1.1e-96	82.25	uncharacterized protein LOC111451246 [Cucurbita moschata]	[more]
XP_008456263.1	7.4e-93	82.76	PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo]	[more]

BLAST of Carg03406-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58250.1	3.2e-58	65.56	unknown protein	[more]

BLAST of Carg03406-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P72777\|YC54L_SYNY3	9.4e-15	47.06	Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
sp\|P51204\|YCF54_PORPU	5.3e-10	40.86	Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1	[more]
sp\|Q1XDT3\|YCF54_PYRYE	2.2e-08	36.96	Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1	[more]

BLAST of Carg03406-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2E4\|A0A1S3C2E4_CUCME	4.9e-93	82.76	uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=...	[more]
tr\|A0A0A0KB63\|A0A0A0KB63_CUCSA	6.0e-91	79.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133820 PE=4 SV=1	[more]
tr\|A0A151R811\|A0A151R811_CAJCA	1.9e-73	66.81	Uncharacterized protein ycf54 OS=Cajanus cajan OX=3821 GN=KK1_039959 PE=4 SV=1	[more]
tr\|A0A0L9VCG0\|A0A0L9VCG0_PHAAN	5.8e-70	65.65	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g141000 PE...	[more]
tr\|A0A0S3S5Q8\|A0A0S3S5Q8_PHAAN	5.8e-70	65.65	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019616	Uncharacterised_Ycf54
IPR038409	Ycf54-like_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03406	Carg03406	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03406-RA	Carg03406-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03406-RA.three_prime_UTR.1	Carg03406-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03406-RA.CDS.3	Carg03406-RA.CDS.3	CDS
Carg03406-RA.CDS.2	Carg03406-RA.CDS.2	CDS
Carg03406-RA.CDS.1	Carg03406-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03406-RA.five_prime_UTR.1	Carg03406-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03406-RA.exon.3	Carg03406-RA.exon.3	exon
Carg03406-RA.exon.2	Carg03406-RA.exon.2	exon
Carg03406-RA.exon.1	Carg03406-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038409	Ycf54-like superfamily	GENE3D	G3DSA:3.30.70.1860		coord: 93..205 e-value: 1.1E-40 score: 140.0
IPR019616	Uncharacterised protein family Ycf54	PFAM	PF10674	Ycf54	coord: 95..184 e-value: 2.2E-35 score: 120.7
IPR019616	Uncharacterised protein family Ycf54	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 30..228
None	No IPR available	PANTHER	PTHR35319:SF2	SUBFAMILY NOT NAMED	coord: 30..228