Cp4.1LG05g10160 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g10160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionYcf54-like protein
LocationCp4.1LG05 : 6625677 .. 6627837 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTTCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGAGCACTTTCGCTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGACGTTCTTCGCCGGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGGTAATCGTTAGGTTTCCGAGCTTCTTCCACATTTCGTTTGTCTTCAATTTCTGAAATCCGGCTTGATGTACATTGCTGTTCTAATTTAGGTATGAATTGATCGATACATCAGGGGTTAGGTTTTTAAAAATTGTCGATGTCCATGGAAATCTAGTGAAATTGTATGTATGTATTTTTCGAAGTCGAGATGTTTATGTTTAATCACGAAATTGATCCTAATTTGTTGTGCTTCGTTGGTTTGCCCTATTTCGTTCTTGAAATTTTGGGATTGTGGAAGTGAAGCTCACTGGTTTTATGATCGTTTCAATGCAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGAGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCAAATATCACCAGGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTAAGCTACTTGCTTTCATTTTGCATTATTCACTCTGCTTTGCAAGATTACATTATAAATAAAGGGCGTGGATCCAAAACTACAACCTTAGTTAGGAATAGGGGCATAAACACTAAAGCTCAAGTTCCATTTGCGTCATTTGCATTGGTATATGTAGTTCTTGCTGCTCATTGGCTTGGATACTTTATCATGGAAAGTTCGATCATCTTGAGGCGTAGTAGATTACAAAAAAAGAAGATGCTACATGTGAGATCCCACATCGGTTAGGGAGGAGCAAGACTTCACTCCATAGCAAACAGTTTTAAAAACCTCGAGGGAAAGTTCAAAGAGGACAATATCTAGTAGCAGTAGGCTTGGGTTGTTACAAATCGTATCATAGTTAGACACTGGACAATATGCCAGCGAGGAGGTTGAGCCTTGAAGGGGGTGGACACGAGGCAGTATGGCAGCAAAAATGTTGGGCCCTGAAGGGGGGTGGATTGGAGGGTCCCACATTGATTGGATAAGGGAACAAGTGCCAGCGAGCCCCGAATGGGGTGGACACGAGGTGGTGTGCTAGCAAGGACGCTGGGTCCCAGAGGGGTGGATTGGGGTTTCACATCGATTGGATAAGGGAACGAGTGCCAACGAAGAAACTAGGTCCCCAATGGGGGATGGATTGTGAAATCTCACATCGGTGGTTGGGGAGGAGAACGAAGCATTATTTATAAGGATGTGGAAACCTCTCTCCAGCAAACGCGTTTTAAAAACAATTGGCTAGCGGTGGGCAAACAATTGGGTAGATAACAAATTTTGAAGGACTACTGGAGGCTTGAATATAATCAACAGTTGCAATGCATCTTAATTTTATAGTGCTTTGTTATTTGCATATGCTGACAGAACAACATTTACTCCCATCTTGTTTCTATAGATGCTTTTTGGATTCCTAGTTTCTATAGATGCTGTAATGCAAACTTACCTTGTTGAGAAGTTGTTTAGCAACAGCAACTGAAACTCATTTATGTTTAATAACCTCATTGTAAAAGGCCTCGTGTTCGATATGAAATCCTATATCGTGGGCGAAGTTAAATGTTTACAATTACTACAAAAGGAGCTCGAAACTCAAATACTCCTGCAACAATGTCTTTGTTCGACAACCCATTTTAGTCCTTTCTTTTGTTGATATGTGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGAGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAACTGTAA

mRNA sequence

ATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTTCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGAGCACTTTCGCTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGACGTTCTTCGCCGGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGAGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCAAATATCACCAGGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGAGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAACTGTAA

Coding sequence (CDS)

ATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTTCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGAGCACTTTCGCTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGACGTTCTTCGCCGGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGAGCGTAACAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCAAATATCACCAGGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGAGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAACTGTAA

Protein sequence

MLGTVNLVMGSSSAAMLTSTQCTSMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFASRRSSPAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTKTEAEAKL
Homology
[Close]
BLAST of Cp4.1LG05g10160 vs. Swiss-Prot
Match: YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 1 

Query: 87  YYFVVANAKFMLDEEEHFRELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQRP 146
           YY+ +A+ KF+L EEE F E+L ER R Y E+NKE DFW VI+P FL        + + P
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 90

Query: 147 A--VALVSTNSTWITFMKLRLDRVLAESYEA--DSLEQALAS 185
              VA+VSTN ++I ++KLRL+ VL   +EA  D++   LAS
Sbjct: 91  EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131

[Close]
BLAST of Cp4.1LG05g10160 vs. Swiss-Prot
Match: YCF54_PORPU (Uncharacterized protein ycf54 OS=Porphyra purpurea GN=ycf54 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.9e-11
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 87  YYFVVANAKFMLDEEEHFRELLFERLRYYAERNKEQDFWLVIEPKFLE-----RFPNITR 146
           YYF +A+  F+L EE    E+  ER+ YY   NKE DFWL+  PKFL      +F N+  
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNL-- 63

Query: 147 RLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLE 180
            +   A+A++STNS +I ++KLR+  V    +E DSL+
Sbjct: 64  -VPNEAIAIISTNSIFINWLKLRIGYVCIGQFE-DSLK 96

[Close]
BLAST of Cp4.1LG05g10160 vs. Swiss-Prot
Match: YCF54_PYRYE (Uncharacterized protein ycf54 OS=Pyropia yezoensis GN=ycf54 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.3e-09
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 1 

Query: 87  YYFVVANAKFMLDEEEHFRELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRR--LQ 146
           YYF +A+  F+L +E    E+  ER+ YY   NK  DFWL+  P FLE+   I+ +  + 
Sbjct: 4   YYFALASQNFLLVQEP-LEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 63

Query: 147 RPAVALVSTNSTWITFMKLRLDRVLAESYEADSLE 180
           + AVA++STN  +I ++KLR+  +    +E D+L+
Sbjct: 64  KDAVAIISTNPIFINWLKLRIGYICIGQFE-DNLQ 96

[Close]
BLAST of Cp4.1LG05g10160 vs. Swiss-Prot
Match: YCF54_CYACA (Uncharacterized protein ycf54 OS=Cyanidium caldarium GN=ycf54 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.0e-07
Identity = 30/94 (31.91%), Postives = 51/94 (54.26%), Query Frame = 1 

Query: 85  NKYYFVVANAKFMLDEEEHFRELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQ 144
           N YY+ +A +K  L +EE   E+L E+  ++   NK  DFW+    K     PN  + LQ
Sbjct: 6   NTYYY-IAASKHFLTQEEPLEEILREKTEHFIANNKSIDFWIFDSTKLNAHSPNEIKTLQ 65

Query: 145 R----PAVALVSTNSTWITFMKLRLDRVLAESYE 175
           +    P + ++S+N  +IT++KLRL  +  +  +
Sbjct: 66  KTFFFPTILIISSNKKFITWLKLRLRYIFTDKIQ 98

[Close]
BLAST of Cp4.1LG05g10160 vs. TrEMBL
Match: A0A0A0KB63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133820 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.6e-82
Identity = 164/225 (72.89%), Postives = 189/225 (84.00%), Query Frame = 1 

Query: 1   MLGTVNLVMGSSSAAMLTSTQCTSMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFA 60
           MLGTV+LVMGSSSAA+ TST   ++KSL + RIGHH+H   LS P  LPS S F+S F +
Sbjct: 1   MLGTVSLVMGSSSAAVATSTHFPALKSLPTSRIGHHNHFPTLSFPFVLPSTSIFTSSFLS 60

Query: 61  S---RRSSPAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAE 120
           S     SSP       V+SDSAD+QESNKYYF+VANAKFMLDEEEHF+ELLFERLR ++E
Sbjct: 61  SPLSSLSSPFNTAIAAVNSDSADKQESNKYYFLVANAKFMLDEEEHFKELLFERLRNFSE 120

Query: 121 RNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADS 180
           RNKEQ+FWLVIEPKFL++FPNIT+RL+RPAVALVST+STWITFMKLRLDRVLAESYEA+S
Sbjct: 121 RNKEQNFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAESYEANS 180

Query: 181 LEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTKTEAE 223
           +E+ALAS PTN+EFEKPE W APY KYEYGWWE FLPP TK EA+
Sbjct: 181 IEEALASTPTNLEFEKPENWVAPYSKYEYGWWEAFLPPATKAEAK 225

[Close]
BLAST of Cp4.1LG05g10160 vs. TrEMBL
Match: A0A151R811_CAJCA (Uncharacterized protein ycf54 OS=Cajanus cajan GN=KK1_039959 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 8.6e-65
Identity = 143/233 (61.37%), Postives = 167/233 (71.67%), Query Frame = 1 

Query: 1   MLGTVNLVMGSSSAAMLTSTQCTSMKSLASFRIGHHSHC---RALSLPSGLPSASGFSSC 60
           MLG   L +GSSS  +  +       +  +   G   H    R  SLP  L S +   +C
Sbjct: 1   MLGVATLTLGSSSTLVAQNHAQQHPTTTLASATGTRRHTVPNRTHSLPMSLVSPTN-QNC 60

Query: 61  FFASRRSSP-----------AAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFR 120
            F S  S P           A+V+ DQ+ SSD   + ESNKYYFVVANAKFMLDEEEHF+
Sbjct: 61  TFLSSFSGPTTHARPFTTAVASVDSDQLNSSDPPTKDESNKYYFVVANAKFMLDEEEHFQ 120

Query: 121 ELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRL 180
           E LFERLR + ERNKEQDFWLVIEPKFL++FPNIT+RL+RPAVALVSTN TWITFMKLRL
Sbjct: 121 EQLFERLRLFGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWITFMKLRL 180

Query: 181 DRVLAESYEADSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTK 219
           DRVL++S+EA+SLE+ALA NPTN+EFEKPEKW APYPKYE+GWWE FLPPV K
Sbjct: 181 DRVLSDSFEAESLEEALAFNPTNLEFEKPEKWVAPYPKYEFGWWEPFLPPVQK 232

[Close]
BLAST of Cp4.1LG05g10160 vs. TrEMBL
Match: M5WCL2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010920mg PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.0e-63
Identity = 125/164 (76.22%), Postives = 145/164 (88.41%), Query Frame = 1 

Query: 60  ASRRSSPAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAER 119
           +S R+S AAV+ DQ+ SSDSA++Q++++YYFVVANAKFMLDEEEHF+E L ERLRYY ER
Sbjct: 66  SSVRTSVAAVDSDQLSSSDSAEKQKASRYYFVVANAKFMLDEEEHFQEQLCERLRYYGER 125

Query: 120 NKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSL 179
           N+EQDFWLVIEPKFL++FPNIT+RL RPAVALVSTN  WITFMKLRLDRVLAES+EA+SL
Sbjct: 126 NREQDFWLVIEPKFLDKFPNITKRLGRPAVALVSTNGPWITFMKLRLDRVLAESFEAESL 185

Query: 180 EQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTKTEAE 223
           E+ALAS PTNIEFEKPEKW APY KYE GWW  FLPP +  EA+
Sbjct: 186 EEALASTPTNIEFEKPEKWVAPYSKYESGWWGPFLPPGSNEEAK 229

[Close]
BLAST of Cp4.1LG05g10160 vs. TrEMBL
Match: B9I789_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s15690g PE=4 SV=2)

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 127/172 (73.84%), Postives = 144/172 (83.72%), Query Frame = 1 

Query: 45  PSGLPSASGFSSCFFASRRSSPAAV--NDQIVSSDSADEQESNKYYFVVANAKFMLDEEE 104
           PS L + +  SS F    +++ AAV  ND   S    D+QE+NKYYFVVANAKFMLDEEE
Sbjct: 46  PSLLSATTNISSSF----KTAVAAVDSNDLTSSPTPPDKQEANKYYFVVANAKFMLDEEE 105

Query: 105 HFRELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMK 164
           HF+ELLFERLR Y ERNKEQDFWLVIEPKFL++FPNIT+RL+RPAVALVSTN TW+TFMK
Sbjct: 106 HFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWMTFMK 165

Query: 165 LRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLP 215
           LRLDRVL++SYEAD+LE+ALASNPT IEFEKPE W APY KYEYGWWE FLP
Sbjct: 166 LRLDRVLSDSYEADTLEEALASNPTTIEFEKPENWVAPYSKYEYGWWEAFLP 213

[Close]
BLAST of Cp4.1LG05g10160 vs. TrEMBL
Match: A5AMD2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031633 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-62
Identity = 128/170 (75.29%), Postives = 147/170 (86.47%), Query Frame = 1 

Query: 49  PSASGFSSCFFASRRSSPAAV-NDQIVSSDSADEQE--SNKYYFVVANAKFMLDEEEHFR 108
           PS S  +    AS +++ A++ +DQ+ SSD A+ QE  S KYYFVVANAKFMLDEEEHF+
Sbjct: 50  PSKSYTTPTRGASFKTAVASIESDQLSSSDPANMQEQGSGKYYFVVANAKFMLDEEEHFK 109

Query: 109 ELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRL 168
           ELLFERLRYY ER+KEQDFWLVIEPKFL++FPNIT+RL+RPAVALVSTN  WITFMKLRL
Sbjct: 110 ELLFERLRYYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRL 169

Query: 169 DRVLAESYEADSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPP 216
           DRVL+ESYEA SLE+ALASNPT+IEFEKPE W APYPKYE+GWWE FLPP
Sbjct: 170 DRVLSESYEAVSLEEALASNPTDIEFEKPENWVAPYPKYEFGWWEPFLPP 219

[Close]
BLAST of Cp4.1LG05g10160 vs. TAIR10
Match: AT5G58250.1 (AT5G58250.1 unknown protein)

HSP 1 Score: 221.5 bits (563), Expect = 5.3e-58
Identity = 120/204 (58.82%), Postives = 143/204 (70.10%), Query Frame = 1 

Query: 18  TSTQCTSMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFASRRSSPAAVNDQIVSSD 77
           T+  C +   L S      +    LS PS    +S FSS F  +  S        I    
Sbjct: 15  TAAACRTKPFLISSSFPKQTKKLHLSSPSLSLPSSHFSSSFKTAATS--------IEQQS 74

Query: 78  SADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAERNKEQDFWLVIEPKFLERFP 137
           S ++ ES KY+F+VANAKFMLDEEEHF+E LFERLRY+ ER   QDFWLVIEPKFL+ FP
Sbjct: 75  SVNKGESTKYHFLVANAKFMLDEEEHFQEQLFERLRYFGERELVQDFWLVIEPKFLDNFP 134

Query: 138 NITRRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKW 197
            IT+RL+RPAVALVSTN TWITFMKLRLDRVL +S+EA SL++ALASNPT +EF+KP+ W
Sbjct: 135 KITQRLRRPAVALVSTNGTWITFMKLRLDRVLYDSFEATSLDEALASNPTTLEFDKPKNW 194

Query: 198 EAPYPKYEYGWWEIFLPPVTKTEA 222
            APYPKYE GWW+ FLP VT+  A
Sbjct: 195 VAPYPKYEPGWWDTFLPKVTQESA 210

[Close]
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: gi|659112528|ref|XP_008456263.1| (PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo])

HSP 1 Score: 315.1 bits (806), Expect = 1.0e-82
Identity = 167/225 (74.22%), Postives = 187/225 (83.11%), Query Frame = 1 

Query: 1   MLGTVNLVMGSSSAAMLTSTQCTSMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFA 60
           MLGT NLVMGSSSAA+ TST   ++KSL +  IGHH+     SLP  LPS S FSSCF +
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 61  S---RRSSPAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAE 120
           S     SSP       V+SDSAD+QES KYYF+VANAKFMLDEEEHF+ELLFERLR Y E
Sbjct: 61  SPLSSLSSPFNTAIAAVNSDSADKQESIKYYFLVANAKFMLDEEEHFKELLFERLRNYGE 120

Query: 121 RNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADS 180
           RNKEQDFWLVIEPKFL++FPNIT+RL+RPAVALVST+STWITFMKLRLDRVLAESYEA+S
Sbjct: 121 RNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAESYEANS 180

Query: 181 LEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTKTEAE 223
           +E+ALAS PTN+EFEKPEKW APY KYEYGWWE FLPPVTK EA+
Sbjct: 181 IEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAK 225

[Close]
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: gi|449444326|ref|XP_004139926.1| (PREDICTED: uncharacterized protein LOC101220505 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 2.2e-82
Identity = 164/225 (72.89%), Postives = 189/225 (84.00%), Query Frame = 1 

Query: 1   MLGTVNLVMGSSSAAMLTSTQCTSMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFA 60
           MLGTV+LVMGSSSAA+ TST   ++KSL + RIGHH+H   LS P  LPS S F+S F +
Sbjct: 1   MLGTVSLVMGSSSAAVATSTHFPALKSLPTSRIGHHNHFPTLSFPFVLPSTSIFTSSFLS 60

Query: 61  S---RRSSPAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAE 120
           S     SSP       V+SDSAD+QESNKYYF+VANAKFMLDEEEHF+ELLFERLR ++E
Sbjct: 61  SPLSSLSSPFNTAIAAVNSDSADKQESNKYYFLVANAKFMLDEEEHFKELLFERLRNFSE 120

Query: 121 RNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADS 180
           RNKEQ+FWLVIEPKFL++FPNIT+RL+RPAVALVST+STWITFMKLRLDRVLAESYEA+S
Sbjct: 121 RNKEQNFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAESYEANS 180

Query: 181 LEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTKTEAE 223
           +E+ALAS PTN+EFEKPE W APY KYEYGWWE FLPP TK EA+
Sbjct: 181 IEEALASTPTNLEFEKPENWVAPYSKYEYGWWEAFLPPATKAEAK 225

[Close]
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: gi|1012327010|gb|KYP38760.1| (Uncharacterized protein ycf54 [Cajanus cajan])

HSP 1 Score: 255.0 bits (650), Expect = 1.2e-64
Identity = 143/233 (61.37%), Postives = 167/233 (71.67%), Query Frame = 1 

Query: 1   MLGTVNLVMGSSSAAMLTSTQCTSMKSLASFRIGHHSHC---RALSLPSGLPSASGFSSC 60
           MLG   L +GSSS  +  +       +  +   G   H    R  SLP  L S +   +C
Sbjct: 1   MLGVATLTLGSSSTLVAQNHAQQHPTTTLASATGTRRHTVPNRTHSLPMSLVSPTN-QNC 60

Query: 61  FFASRRSSP-----------AAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFR 120
            F S  S P           A+V+ DQ+ SSD   + ESNKYYFVVANAKFMLDEEEHF+
Sbjct: 61  TFLSSFSGPTTHARPFTTAVASVDSDQLNSSDPPTKDESNKYYFVVANAKFMLDEEEHFQ 120

Query: 121 ELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRL 180
           E LFERLR + ERNKEQDFWLVIEPKFL++FPNIT+RL+RPAVALVSTN TWITFMKLRL
Sbjct: 121 EQLFERLRLFGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWITFMKLRL 180

Query: 181 DRVLAESYEADSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTK 219
           DRVL++S+EA+SLE+ALA NPTN+EFEKPEKW APYPKYE+GWWE FLPPV K
Sbjct: 181 DRVLSDSFEAESLEEALAFNPTNLEFEKPEKWVAPYPKYEFGWWEPFLPPVQK 232

[Close]
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: gi|1009116442|ref|XP_015874773.1| (PREDICTED: uncharacterized protein LOC107411662 [Ziziphus jujuba])

HSP 1 Score: 253.4 bits (646), Expect = 3.6e-64
Identity = 139/233 (59.66%), Postives = 168/233 (72.10%), Query Frame = 1 

Query: 12  SSAAMLTSTQCTSMKSLASFRIGHHSHCRALSLPSG------------------LPSASG 71
           S+AA      C +  + A     +  + +A+SLP                     P    
Sbjct: 2   SAAASSLGPGCLTASAKAKTHFHNSHNAKAVSLPVSANRNSNHTFFPFNSKVLAFPPPLS 61

Query: 72  FSSCFFASRRSSPAAVN-DQIVSSDSAD---EQESNKYYFVVANAKFMLDEEEHFRELLF 131
            S+   +S +++ AAV+ DQI SSD +D   +QE+ ++YFVVANAKFMLDEEEHF+ELLF
Sbjct: 62  ISTKSSSSVKTAVAAVDSDQISSSDPSDNSKQQEAKRFYFVVANAKFMLDEEEHFKELLF 121

Query: 132 ERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRLDRVL 191
           ERLR Y ERNKEQDFWLVIEPKFL++FPNIT+RL+RPAVALVSTN  WITFMKLRLDRVL
Sbjct: 122 ERLRLYGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGPWITFMKLRLDRVL 181

Query: 192 AESYEADSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTKTEAE 223
           +ESY A+S+E+ALASNPTNIEFEKPEKW APYPKYEYGWWE FLPP +K EA+
Sbjct: 182 SESYAAESIEEALASNPTNIEFEKPEKWVAPYPKYEYGWWEAFLPPGSKEEAK 234

[Close]
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match: gi|743928573|ref|XP_011008496.1| (PREDICTED: uncharacterized protein LOC105113849 [Populus euphratica])

HSP 1 Score: 249.2 bits (635), Expect = 6.8e-63
Identity = 127/172 (73.84%), Postives = 144/172 (83.72%), Query Frame = 1 

Query: 45  PSGLPSASGFSSCFFASRRSSPAAV--NDQIVSSDSADEQESNKYYFVVANAKFMLDEEE 104
           P  L + +  SS F    +++ AAV  ND   S    D+QE+NKYYFVVANAKFMLDEEE
Sbjct: 46  PPLLSTTTNISSSF----KTAVAAVDSNDLTSSPTPPDKQEANKYYFVVANAKFMLDEEE 105

Query: 105 HFRELLFERLRYYAERNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMK 164
           HF+ELLFERLR Y ERNKEQDFWLVIEPKFL++FPNIT+RL+RPAVALVSTN TW+TFMK
Sbjct: 106 HFKELLFERLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWMTFMK 165

Query: 165 LRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLP 215
           LRLDRVL++SYEAD+LE+ALASNPT IEFEKPE W APYPKYEYGWWE FLP
Sbjct: 166 LRLDRVLSDSYEADTLEEALASNPTTIEFEKPENWVAPYPKYEYGWWEAFLP 213

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g10160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YC54L_SYNY31.3e-1347.06Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE... [more]
YCF54_PORPU7.9e-1141.84Uncharacterized protein ycf54 OS=Porphyra purpurea GN=ycf54 PE=3 SV=1[more]
YCF54_PYRYE7.3e-0937.89Uncharacterized protein ycf54 OS=Pyropia yezoensis GN=ycf54 PE=3 SV=1[more]
YCF54_CYACA9.0e-0731.91Uncharacterized protein ycf54 OS=Cyanidium caldarium GN=ycf54 PE=3 SV=1[more]
BLAST of Cp4.1LG05g10160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB63_CUCSA1.6e-8272.89Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133820 PE=4 SV=1[more]
A0A151R811_CAJCA8.6e-6561.37Uncharacterized protein ycf54 OS=Cajanus cajan GN=KK1_039959 PE=4 SV=1[more]
M5WCL2_PRUPE8.0e-6376.22Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010920mg PE=4 SV=1[more]
B9I789_POPTR1.1e-6273.84Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s15690g PE=4 SV=2[more]
A5AMD2_VITVI1.4e-6275.29Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031633 PE=4 SV=1[more]
BLAST of Cp4.1LG05g10160 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58250.15.3e-5858.82 unknown protein[more]
BLAST of Cp4.1LG05g10160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112528|ref|XP_008456263.1|1.0e-8274.22PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo][more]
gi|449444326|ref|XP_004139926.1|2.2e-8272.89PREDICTED: uncharacterized protein LOC101220505 [Cucumis sativus][more]
gi|1012327010|gb|KYP38760.1|1.2e-6461.37Uncharacterized protein ycf54 [Cajanus cajan][more]
gi|1009116442|ref|XP_015874773.1|3.6e-6459.66PREDICTED: uncharacterized protein LOC107411662 [Ziziphus jujuba][more]
gi|743928573|ref|XP_011008496.1|6.8e-6373.84PREDICTED: uncharacterized protein LOC105113849 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019616Uncharacterised_Ycf54
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0009579 thylakoid
cellular_component GO:0044424 intracellular part
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g10160.1Cp4.1LG05g10160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019616Uncharacterised protein family Ycf54PFAMPF10674Ycf54coord: 86..175
score: 9.8
NoneNo IPR availablePANTHERPTHR35319FAMILY NOT NAMEDcoord: 54..222
score: 6.0
NoneNo IPR availablePANTHERPTHR35319:SF2SUBFAMILY NOT NAMEDcoord: 54..222
score: 6.0