CmoCh02G006840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G006840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ycf54-like protein
Location	Cmo_Chr02 : 4337475 .. 4340056 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGCATATTTGGCTGATTAATTTAGTTGGCCATTTCCACCATTTTTGATCTGCTCTTCAATCACAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGCAATTCGCCAAATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGACCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTTTCAACACAGCAATCGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGGTAATCGTTAGGTTTCCGAGATTCTTCCGCATTTCGTTTGTCTTCAATTTCTGAAATCCGGCTTGATGTACATTGTTGTTCTAATTCAGGTATGAATTGATCGATACATCAGGGGTTAGGTTTTTAAAAATTGTCGATGTCCATGGAAATCTAGTGAAATTGTATGTATGTGTTTTTCGAAGTCGAGATGTTTATGTTTAATCACGAAATTGATCCTAATTTGTTTTGCTTCGTTGGTTTGCCCTATTTCGTTCTTGAAATTTTGGGATTGTGGAAGTGAAGCTCACTGGTTTTATGATCGTTTCAATGCAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGTTACTATGCCGAGCGTAGCAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCGGTTGCTCTTGTTTCAACCAATAGTACTTGGATCACGTAAGCTACCTGTTTTCATTTTGCATTATTCACCCTGCTTTGCAATATTGCATTATATATAAAGGGCGTGGATCCAAAACTACAACCTTAGTTAGGAATAGGGGCATAAACACTAATGTCTAACAACTTGAATTATGCACTGCTCATTGGCTCGGATACTTTATCATGGAAACTTGGATCATCTTGAGGCCTAATAGATTACAAAAAAAAGGAAGATGCTACATGTGAGATCCCACATCGGTTAAGGAGGAGAACAAAGCTTCACTCCCTAGCAGACGGTTTTAAAAACCTTGAGAGAAACTCGAAAGGGAAAGTTCAAAGATAACAATATATACTAGCAGTGGACTTGAGTTATTATTACAAATGGTATCAGAGTTAGACACTGGACAATATGCCAGTGAGGAGGTTGAGCCTTGAAGGAGGTGGACACAAGGTGGTGTGCCAGCTAGAATGCTGGGCCCTGAAAGGGGGTGGATCGAGGGGTCCCATATTGATTGGAGAAGGGAATGAGTGCCAGTGAGCCCTGAAGGGGGTGGACACGAGGCGGTGTGCCATCAAGGACCCTGGGTCCCAAAGAGGGTGGATTGGGGGTTCCACATCGATTGGAGAAGGGAACGAGTGTTAGCGAGGACACTGGGTCCCCAATGGGGGTGGATTGTGAAATCTCACATCGGTTGGGGAGGAGAGCGAAACATTGTTTATAAGGATGTGAAACCCTCTCTCTAGGAAACGCGTTTTAAAAACAATTAGCTAGCGGTGGGCAAACAATTGGGTAGATAACAAATTTTGAAGGACTACTGGAGGCTTGAATATAATCAACAGTTGCAATGCATCTTAATTTTATAGTGCTTTGTTATTTGCATATGCTGACAGAACAACATTTACTCCCATCTTGTTTCTATAGATGCTTTTTGGATTCCTAGTTTCTATAGATGCGGTAATGCAAACTTACCTTGTTGAGAAGTTGTTTAGCAACAGCAACTCAAACTCATTTATGTTTAATAACCTCATTGTAAAAGGCCTCGTGTTCGGTATGAAATCGTACATTGTGGGCGAAGTTAAATGTTTACAATTACTACAAAAGTAGCTCGAAACTCAAATACTCCTGCATCTCCTGCAACAATGTCTTTGCTGAACAACCCATTTTAGTCCTTTCTTTTGTCGATATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGTGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTGTAAGCTGTGTGTGATTTTCTTTAACGTCTTTAATCAAATATAATTTGGATGGTGTGAGGATTTGATAAACCATTTGTAGTTGGAAGGCAGTTTTTGATTATTCTAATGTGGTAAATGAGTATGATCAATTAAAGTGAGCATAGTCATCAAGAATTGACATGTACCTCGATTATGATTTGAATCCTGTAAGTATAGTACATGTACCTCGATTATGATTTGAATCCTGTAAGTATAGTACGTAATTTAATTAGTTAGTTCAGTAGTGGTTGACATGCAACATGCAAGTTCGCATGTAA

mRNA sequence

GTTTGCATATTTGGCTGATTAATTTAGTTGGCCATTTCCACCATTTTTGATCTGCTCTTCAATCACAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGCAATTCGCCAAATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGACCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTTTCAACACAGCAATCGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGTTACTATGCCGAGCGTAGCAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCGGTTGCTCTTGTTTCAACCAATAGTACTTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGTGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAATGGTTGACATGCAACATGCAAGTTCGCATGTAA

Coding sequence (CDS)

ATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGACCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTTTCAACACAGCAATCGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGTTACTATGCCGAGCGTAGCAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCGGTTGCTCTTGTTTCAACCAATAGTACTTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGTGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAATGGTTGACATGCAACATGCAAGTTCGCATGTAA

Homology

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BLAST of CmoCh02G006840 vs. Swiss-Prot
Match: YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-13
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1


Query: 92  YYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRP 151
           YY+ +A+ KF+L EEE F E+L ER R Y E++KE DFW VI+P FL        + + P
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 90

Query: 152 A--VALVSTNSTWITFMKLRLDRVLAESYEA--DSLEQALAS 190
              VA+VSTN ++I ++KLRL+ VL   +EA  D++   LAS
Sbjct: 91  EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131

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BLAST of CmoCh02G006840 vs. Swiss-Prot
Match: YCF54_PORPU (Uncharacterized protein ycf54 OS=Porphyra purpurea GN=ycf54 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-10
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 92  YYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLE-----RFPNITK 151
           YYF +A+  F+L EE    E+  ER+ YY   +KE DFWL+  PKFL      +F N+  
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNL-- 63

Query: 152 RLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLE 185
            +   A+A++STNS +I ++KLR+  V    +E DSL+
Sbjct: 64  -VPNEAIAIISTNSIFINWLKLRIGYVCIGQFE-DSLK 96

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BLAST of CmoCh02G006840 vs. Swiss-Prot
Match: YCF54_PYRYE (Uncharacterized protein ycf54 OS=Pyropia yezoensis GN=ycf54 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-08
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 92  YYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKR--LQ 151
           YYF +A+  F+L +E    E+  ER+ YY   +K  DFWL+  P FLE+   I+ +  + 
Sbjct: 4   YYFALASQNFLLVQEP-LEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 63

Query: 152 RPAVALVSTNSTWITFMKLRLDRVLAESYEADSLE 185
           + AVA++STN  +I ++KLR+  +    +E D+L+
Sbjct: 64  KDAVAIISTNPIFINWLKLRIGYICIGQFE-DNLQ 96

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BLAST of CmoCh02G006840 vs. Swiss-Prot
Match: YCF54_CYACA (Uncharacterized protein ycf54 OS=Cyanidium caldarium GN=ycf54 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 30/94 (31.91%), Postives = 51/94 (54.26%), Query Frame = 1


Query: 90  NKYYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQ 149
           N YY+ +A +K  L +EE   E+L E+  ++   +K  DFW+    K     PN  K LQ
Sbjct: 6   NTYYY-IAASKHFLTQEEPLEEILREKTEHFIANNKSIDFWIFDSTKLNAHSPNEIKTLQ 65

Query: 150 R----PAVALVSTNSTWITFMKLRLDRVLAESYE 180
           +    P + ++S+N  +IT++KLRL  +  +  +
Sbjct: 66  KTFFFPTILIISSNKKFITWLKLRLRYIFTDKIQ 98

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BLAST of CmoCh02G006840 vs. TrEMBL
Match: A0A0A0KB63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133820 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.9e-87
Identity = 174/230 (75.65%), Postives = 197/230 (85.65%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTV+LVMGSSSAA+ TST   A+KSL + RIGHH+H   LS P  LPS S F+S F +
Sbjct: 1   MLGTVSLVMGSSSAAVATSTHFPALKSLPTSRIGHHNHFPTLSFPFVLPSTSIFTSSFLS 60

Query: 61  S---RGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERL 120
           S     SSPFNTAIAAVN     SDSAD+QESNKYYF+VANAKFMLDEEEHF+ELLFERL
Sbjct: 61  SPLSSLSSPFNTAIAAVN-----SDSADKQESNKYYFLVANAKFMLDEEEHFKELLFERL 120

Query: 121 RYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAES 180
           R ++ER+KEQ+FWLVIEPKFL++FPNITKRL+RPAVALVST+STWITFMKLRLDRVLAES
Sbjct: 121 RNFSERNKEQNFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAES 180

Query: 181 YEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 228
           YEA+S+E+ALAS PTN+EFEKPE WVAPY KYEYGWWE FLPP TK EA+
Sbjct: 181 YEANSIEEALASTPTNLEFEKPENWVAPYSKYEYGWWEAFLPPATKAEAK 225

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BLAST of CmoCh02G006840 vs. TrEMBL
Match: A0A151R811_CAJCA (Uncharacterized protein ycf54 OS=Cajanus cajan GN=KK1_039959 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68
Identity = 145/232 (62.50%), Postives = 172/232 (74.14%), Query Frame = 1


Query: 1   MLGTVNLVMGSSS-------AAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASG 60
           MLG   L +GSSS       A    +T   +        + + +H  P+SL S       
Sbjct: 1   MLGVATLTLGSSSTLVAQNHAQQHPTTTLASATGTRRHTVPNRTHSLPMSLVSPTNQNCT 60

Query: 61  FSSCFFA-SRGSSPFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRE 120
           F S F   +  + PF TA+A+V+ DQ+ SSD   + ESNKYYFVVANAKFMLDEEEHF+E
Sbjct: 61  FLSSFSGPTTHARPFTTAVASVDSDQLNSSDPPTKDESNKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLD 180
            LFERLR + ER+KEQDFWLVIEPKFL++FPNITKRL+RPAVALVSTN TWITFMKLRLD
Sbjct: 121 QLFERLRLFGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWITFMKLRLD 180

Query: 181 RVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTK 224
           RVL++S+EA+SLE+ALA NPTN+EFEKPEKWVAPYPKYE+GWWE FLPPV K
Sbjct: 181 RVLSDSFEAESLEEALAFNPTNLEFEKPEKWVAPYPKYEFGWWEPFLPPVQK 232

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BLAST of CmoCh02G006840 vs. TrEMBL
Match: V7BLT3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G082200g PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.4e-67
Identity = 138/227 (60.79%), Postives = 169/227 (74.45%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFR---IGHHSHCRPLSLPSGLPSASGFSSC 60
           MLG   L +GSS+  +        + S    R   +   SH  P+SL S    +  F S 
Sbjct: 2   MLGMATLTLGSSTTMVAQQQHAATLASANGHRRHSVSSRSHSFPMSLVSPTHQSFTFLSS 61

Query: 61  FFASRGSSPFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120
           F     + PF TA+A+V+ DQ+ SSD   + E+NKYYFVVANAKFMLDEEEHF+E LFER
Sbjct: 62  FKEPAHARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQEQLFER 121

Query: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LR + ER++EQDFWLVIEPKFL++FPNIT RL+RPAVALVSTN TWI FMKLRLDRVL++
Sbjct: 122 LRLFGERNQEQDFWLVIEPKFLDKFPNITNRLKRPAVALVSTNGTWIKFMKLRLDRVLSD 181

Query: 181 SYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTK 224
           S+EA+SLE+ALA NPT+++FEKPEKWVAPYPKYE+GWW+ FLPPV K
Sbjct: 182 SFEAESLEEALAFNPTDLKFEKPEKWVAPYPKYEFGWWQPFLPPVQK 228

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BLAST of CmoCh02G006840 vs. TrEMBL
Match: A5AMD2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031633 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.8e-66
Identity = 132/163 (80.98%), Postives = 148/163 (90.80%), Query Frame = 1


Query: 61  SRGSSPFNTAIAAV-NDQIVSSDSADEQE--SNKYYFVVANAKFMLDEEEHFRELLFERL 120
           +RG+S F TA+A++ +DQ+ SSD A+ QE  S KYYFVVANAKFMLDEEEHF+ELLFERL
Sbjct: 58  TRGAS-FKTAVASIESDQLSSSDPANMQEQGSGKYYFVVANAKFMLDEEEHFKELLFERL 117

Query: 121 RYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAES 180
           RYY ERSKEQDFWLVIEPKFL++FPNITKRL+RPAVALVSTN  WITFMKLRLDRVL+ES
Sbjct: 118 RYYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSES 177

Query: 181 YEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPP 221
           YEA SLE+ALASNPT+IEFEKPE WVAPYPKYE+GWWE FLPP
Sbjct: 178 YEAVSLEEALASNPTDIEFEKPENWVAPYPKYEFGWWEPFLPP 219

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BLAST of CmoCh02G006840 vs. TrEMBL
Match: F6GU66_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08380 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.7e-66
Identity = 132/164 (80.49%), Postives = 148/164 (90.24%), Query Frame = 1


Query: 61  SRGSSPFNTAIAAV-NDQIVSSDSAD---EQESNKYYFVVANAKFMLDEEEHFRELLFER 120
           +RG+S F TA+A++ +DQ+ SSD A+   EQ S KYYFVVANAKFMLDEEEHF+ELLFER
Sbjct: 58  TRGAS-FKTAVASIESDQLSSSDPANMQQEQGSGKYYFVVANAKFMLDEEEHFKELLFER 117

Query: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRYY ERSKEQDFWLVIEPKFL++FPNITKRL+RPAVALVSTN  WITFMKLRLDRVL+E
Sbjct: 118 LRYYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTNGPWITFMKLRLDRVLSE 177

Query: 181 SYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPP 221
           SYEA SLE+ALASNPT+IEFEKPE WVAPYPKYE+GWWE FLPP
Sbjct: 178 SYEAVSLEEALASNPTDIEFEKPENWVAPYPKYEFGWWEPFLPP 220

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BLAST of CmoCh02G006840 vs. TAIR10
Match: AT5G58250.1 (AT5G58250.1 unknown protein)

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-59
Identity = 124/210 (59.05%), Postives = 146/210 (69.52%), Query Frame = 1


Query: 18  TSTQCTAMKSLASFRIGHHSHCRPLSLPS-GLPSASGFSSCFFASRGSSPFNTAIAAVND 77
           T+  C     L S      +    LS PS  LPS          S  SS F TA  ++  
Sbjct: 15  TAAACRTKPFLISSSFPKQTKKLHLSSPSLSLPS----------SHFSSSFKTAATSIEQ 74

Query: 78  QIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPK 137
           Q     S ++ ES KY+F+VANAKFMLDEEEHF+E LFERLRY+ ER   QDFWLVIEPK
Sbjct: 75  Q----SSVNKGESTKYHFLVANAKFMLDEEEHFQEQLFERLRYFGERELVQDFWLVIEPK 134

Query: 138 FLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLEQALASNPTNIEF 197
           FL+ FP IT+RL+RPAVALVSTN TWITFMKLRLDRVL +S+EA SL++ALASNPT +EF
Sbjct: 135 FLDNFPKITQRLRRPAVALVSTNGTWITFMKLRLDRVLYDSFEATSLDEALASNPTTLEF 194

Query: 198 EKPEKWVAPYPKYEYGWWEIFLPPVTKTEA 227
           +KP+ WVAPYPKYE GWW+ FLP VT+  A
Sbjct: 195 DKPKNWVAPYPKYEPGWWDTFLPKVTQESA 210

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BLAST of CmoCh02G006840 vs. NCBI nr
Match: gi|659112528|ref|XP_008456263.1| (PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 1.9e-87
Identity = 177/230 (76.96%), Postives = 195/230 (84.78%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGT NLVMGSSSAA+ TST   A+KSL +  IGHH+     SLP  LPS S FSSCF +
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 61  S---RGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERL 120
           S     SSPFNTAIAAVN     SDSAD+QES KYYF+VANAKFMLDEEEHF+ELLFERL
Sbjct: 61  SPLSSLSSPFNTAIAAVN-----SDSADKQESIKYYFLVANAKFMLDEEEHFKELLFERL 120

Query: 121 RYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAES 180
           R Y ER+KEQDFWLVIEPKFL++FPNITKRL+RPAVALVST+STWITFMKLRLDRVLAES
Sbjct: 121 RNYGERNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAES 180

Query: 181 YEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 228
           YEA+S+E+ALAS PTN+EFEKPEKWVAPY KYEYGWWE FLPPVTK EA+
Sbjct: 181 YEANSIEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAK 225

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BLAST of CmoCh02G006840 vs. NCBI nr
Match: gi|449444326|ref|XP_004139926.1| (PREDICTED: uncharacterized protein LOC101220505 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 4.2e-87
Identity = 174/230 (75.65%), Postives = 197/230 (85.65%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTV+LVMGSSSAA+ TST   A+KSL + RIGHH+H   LS P  LPS S F+S F +
Sbjct: 1   MLGTVSLVMGSSSAAVATSTHFPALKSLPTSRIGHHNHFPTLSFPFVLPSTSIFTSSFLS 60

Query: 61  S---RGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERL 120
           S     SSPFNTAIAAVN     SDSAD+QESNKYYF+VANAKFMLDEEEHF+ELLFERL
Sbjct: 61  SPLSSLSSPFNTAIAAVN-----SDSADKQESNKYYFLVANAKFMLDEEEHFKELLFERL 120

Query: 121 RYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAES 180
           R ++ER+KEQ+FWLVIEPKFL++FPNITKRL+RPAVALVST+STWITFMKLRLDRVLAES
Sbjct: 121 RNFSERNKEQNFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAES 180

Query: 181 YEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 228
           YEA+S+E+ALAS PTN+EFEKPE WVAPY KYEYGWWE FLPP TK EA+
Sbjct: 181 YEANSIEEALASTPTNLEFEKPENWVAPYSKYEYGWWEAFLPPATKAEAK 225

[Close]

BLAST of CmoCh02G006840 vs. NCBI nr
Match: gi|1012327010|gb|KYP38760.1| (Uncharacterized protein ycf54 [Cajanus cajan])

HSP 1 Score: 267.7 bits (683), Expect = 2.0e-68
Identity = 145/232 (62.50%), Postives = 172/232 (74.14%), Query Frame = 1


Query: 1   MLGTVNLVMGSSS-------AAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASG 60
           MLG   L +GSSS       A    +T   +        + + +H  P+SL S       
Sbjct: 1   MLGVATLTLGSSSTLVAQNHAQQHPTTTLASATGTRRHTVPNRTHSLPMSLVSPTNQNCT 60

Query: 61  FSSCFFA-SRGSSPFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRE 120
           F S F   +  + PF TA+A+V+ DQ+ SSD   + ESNKYYFVVANAKFMLDEEEHF+E
Sbjct: 61  FLSSFSGPTTHARPFTTAVASVDSDQLNSSDPPTKDESNKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLD 180
            LFERLR + ER+KEQDFWLVIEPKFL++FPNITKRL+RPAVALVSTN TWITFMKLRLD
Sbjct: 121 QLFERLRLFGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWITFMKLRLD 180

Query: 181 RVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTK 224
           RVL++S+EA+SLE+ALA NPTN+EFEKPEKWVAPYPKYE+GWWE FLPPV K
Sbjct: 181 RVLSDSFEAESLEEALAFNPTNLEFEKPEKWVAPYPKYEFGWWEPFLPPVQK 232

[Close]

BLAST of CmoCh02G006840 vs. NCBI nr
Match: gi|1009116442|ref|XP_015874773.1| (PREDICTED: uncharacterized protein LOC107411662 [Ziziphus jujuba])

HSP 1 Score: 265.8 bits (678), Expect = 7.4e-68
Identity = 132/172 (76.74%), Postives = 153/172 (88.95%), Query Frame = 1


Query: 60  ASRGSSPFNTAIAAVN-DQIVSSDSAD---EQESNKYYFVVANAKFMLDEEEHFRELLFE 119
           +++ SS   TA+AAV+ DQI SSD +D   +QE+ ++YFVVANAKFMLDEEEHF+ELLFE
Sbjct: 63  STKSSSSVKTAVAAVDSDQISSSDPSDNSKQQEAKRFYFVVANAKFMLDEEEHFKELLFE 122

Query: 120 RLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA 179
           RLR Y ER+KEQDFWLVIEPKFL++FPNITKRL+RPAVALVSTN  WITFMKLRLDRVL+
Sbjct: 123 RLRLYGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGPWITFMKLRLDRVLS 182

Query: 180 ESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 228
           ESY A+S+E+ALASNPTNIEFEKPEKWVAPYPKYEYGWWE FLPP +K EA+
Sbjct: 183 ESYAAESIEEALASNPTNIEFEKPEKWVAPYPKYEYGWWEAFLPPGSKEEAK 234

[Close]

BLAST of CmoCh02G006840 vs. NCBI nr
Match: gi|593692762|ref|XP_007146923.1| (hypothetical protein PHAVU_006G082200g [Phaseolus vulgaris])

HSP 1 Score: 263.1 bits (671), Expect = 4.8e-67
Identity = 138/227 (60.79%), Postives = 169/227 (74.45%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFR---IGHHSHCRPLSLPSGLPSASGFSSC 60
           MLG   L +GSS+  +        + S    R   +   SH  P+SL S    +  F S 
Sbjct: 2   MLGMATLTLGSSTTMVAQQQHAATLASANGHRRHSVSSRSHSFPMSLVSPTHQSFTFLSS 61

Query: 61  FFASRGSSPFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120
           F     + PF TA+A+V+ DQ+ SSD   + E+NKYYFVVANAKFMLDEEEHF+E LFER
Sbjct: 62  FKEPAHARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQEQLFER 121

Query: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LR + ER++EQDFWLVIEPKFL++FPNIT RL+RPAVALVSTN TWI FMKLRLDRVL++
Sbjct: 122 LRLFGERNQEQDFWLVIEPKFLDKFPNITNRLKRPAVALVSTNGTWIKFMKLRLDRVLSD 181

Query: 181 SYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTK 224
           S+EA+SLE+ALA NPT+++FEKPEKWVAPYPKYE+GWW+ FLPPV K
Sbjct: 182 SFEAESLEEALAFNPTDLKFEKPEKWVAPYPKYEFGWWQPFLPPVQK 228

The following BLAST results are available for this feature:

BLAST of CmoCh02G006840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YC54L_SYNY3	5.2e-13	46.08	Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE...	[more]
YCF54_PORPU	3.2e-10	40.82	Uncharacterized protein ycf54 OS=Porphyra purpurea GN=ycf54 PE=3 SV=1	[more]
YCF54_PYRYE	3.0e-08	36.84	Uncharacterized protein ycf54 OS=Pyropia yezoensis GN=ycf54 PE=3 SV=1	[more]
YCF54_CYACA	1.6e-06	31.91	Uncharacterized protein ycf54 OS=Cyanidium caldarium GN=ycf54 PE=3 SV=1	[more]

BLAST of CmoCh02G006840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB63_CUCSA	2.9e-87	75.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133820 PE=4 SV=1	[more]
A0A151R811_CAJCA	1.4e-68	62.50	Uncharacterized protein ycf54 OS=Cajanus cajan GN=KK1_039959 PE=4 SV=1	[more]
V7BLT3_PHAVU	3.4e-67	60.79	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G082200g PE=4 SV=1	[more]
A5AMD2_VITVI	2.8e-66	80.98	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031633 PE=4 SV=1	[more]
F6GU66_VITVI	3.7e-66	80.49	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08380 PE=4 SV=...	[more]

BLAST of CmoCh02G006840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58250.1	1.3e-59	59.05	unknown protein	[more]

BLAST of CmoCh02G006840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112528\|ref\|XP_008456263.1\|	1.9e-87	76.96	PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo]	[more]
gi\|449444326\|ref\|XP_004139926.1\|	4.2e-87	75.65	PREDICTED: uncharacterized protein LOC101220505 [Cucumis sativus]	[more]
gi\|1012327010\|gb\|KYP38760.1\|	2.0e-68	62.50	Uncharacterized protein ycf54 [Cajanus cajan]	[more]
gi\|1009116442\|ref\|XP_015874773.1\|	7.4e-68	76.74	PREDICTED: uncharacterized protein LOC107411662 [Ziziphus jujuba]	[more]
gi\|593692762\|ref\|XP_007146923.1\|	4.8e-67	60.79	hypothetical protein PHAVU_006G082200g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019616	Uncharacterised_Ycf54

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G006840.1	CmoCh02G006840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019616	Uncharacterised protein family Ycf54	PFAM	PF10674	Ycf54	coord: 91..180 score: 1.5
None	No IPR available	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 13..227 score: 7.5E
None	No IPR available	PANTHER	PTHR35319:SF2	SUBFAMILY NOT NAMED	coord: 13..227 score: 7.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G006840	Cucsa.118800	Cucumber (Gy14) v1	cgycmoB0302
CmoCh02G006840	CmaCh02G006860	Cucurbita maxima (Rimu)	cmacmoB620
CmoCh02G006840	Cla013429	Watermelon (97103) v1	cmowmB577
CmoCh02G006840	Csa6G133820	Cucumber (Chinese Long) v2	cmocuB622
CmoCh02G006840	MELO3C019598	Melon (DHL92) v3.5.1	cmomeB539
CmoCh02G006840	ClCG02G018930	Watermelon (Charleston Gray)	cmowcgB525
CmoCh02G006840	CSPI06G10810	Wild cucumber (PI 183967)	cmocpiB629
CmoCh02G006840	Lsi10G014930	Bottle gourd (USVL1VR-Ls)	cmolsiB532
CmoCh02G006840	Cp4.1LG16g07010	Cucurbita pepo (Zucchini)	cmocpeB574
CmoCh02G006840	Cp4.1LG05g10160	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G006840	MELO3C019598.2	Melon (DHL92) v3.6.1	cmomedB603
CmoCh02G006840	CsaV3_6G013260	Cucumber (Chinese Long) v3	cmocucB0742
CmoCh02G006840	Cla97C02G044860	Watermelon (97103) v2	cmowmbB588
CmoCh02G006840	Bhi10G000706	Wax gourd	cmowgoB0746
CmoCh02G006840	CsGy6G010900	Cucumber (Gy14) v2	cgybcmoB800
CmoCh02G006840	Carg11748	Silver-seed gourd	carcmoB1422
CmoCh02G006840	Carg03406	Silver-seed gourd	carcmoB0467

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G006840	CmoCh20G003230	Cucurbita moschata (Rifu)	cmocmoB403

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G006840	Silver-seed gourd	carcmoB1423
CmoCh02G006840	Cucurbita maxima (Rimu)	cmacmoB553
CmoCh02G006840	Cucurbita maxima (Rimu)	cmacmoB619