Cp4.1LG16g07010 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g07010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ycf54-like protein
Location	Cp4.1LG16 : 7178640 .. 7181284 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAGTGGGCAAGATGGTAACTTGACATTGTAATAGATAACTAGATAAGGTTCCTTCCTCTGTTTGTAGATTTTGCTGATTCATTTTGTTGGCCATTACTTCCATTTTTTGCTCTGCTCAAATTCTGCAATTACCTTCACAATCCACAAGAAGAAGGAGGAGAAGAAGAAGAACGCCAAATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGGACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCCTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATCGTGTCCTCCGATTCGGCGGACAAGGTAATCGTTAGCTTCTGAGATTTTTCCGCATTTCTCTTTCCTTCAATTTCTAAACTCCGACGATACGCGTTATTGTTCATATCTAGGTATAAATTAATCGATTATTACGGGTTCGATTTTTAAAATTGTTGATATCCATGGAAATCTAGGGAAATTGTATGTATTGTCGATGTCGAGACGTTTACATTAAACCGCGGATTTGATCCTAATTCGTCTTGCTTTATGTCTGCCGTGTGTTTGCCCTAGATCGTTCTGGAAATTTGGGATTGTAGAAGCCAAATTCACTGGTTCTATGATCTTTCCAATGCAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAACAGTACCTGGATTACGTAAGCTACCTGTTCTTATTTTGCATACTTGGTTTTTCTTTATGACATTACATAGGTTGAATCATAAAAAAAAAACCCCTCACAGTGTCATTTGTTTCAAAATACTTGGAATATTGCTCTTACTTTTTCATACACTTTCAAAACTATAGTAGAAATTCTTTAGAACTTTCAAAAGATGCAACGTTACCCTTAATCTTCTACAAGTGTTTTGAAACTATCTTTGGAGTAGAAATCGCTTGAATTTCGAATAAAGCTGAGATCTAGAATAGTGTGACGGTGACTTTGGGGTACTTTTCGAACCAAGGTAAACTTCAATAGTATCTTTTTTATATAATTTAGCCTATTAAATAAAGGGTGAGGACTCAACACTTACAACCTTACGAATGTGTGGTGGTGTGAGATCCCAAACCGGTTGGAGAGGAGAACAAAACATTCTCTAAAGGTGTGGAAACCTCTCTCTAACAGACACGTTTTAAAAACTTTGAAGGGAAGCCGAGAGGGGAAAGCCAAAAATGGGCAATATCTGCTTACAGTGGGCTTGAGCCGTTACAAGGTGACTTAGATGTACTTTTCAAATAAATGGCTATTAAATAAAGGGTGAGGACCCGACTCTTACAACCTCACGAATGCGGGCATAACAAATAAGTCCCGTTTACATCACTTGCATTGGTACATTTAGTTCTTGCAGCTCATTGATAATAGGATATCATACCATAGAAAAATTGATCATCTGAGGCAGAACAGATTCTTCATTTGCTCGTAGCTTTTATTAATGGCGTGCTTAGCGTTACAATAGGAAAAGGGATATGGAAATGGTTGCAGCCATTGTAAAAGGACCTCAAAACTCGAACATTCTGTCATGTATTCCAACAACGTGTTTGGTTGACTGCCCATTTTGGTCCCCTTTTCTTGTTGATATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTGGCTCCCTATTCCAAGTATGAATATGGATGGTGGGAGGCTTTCTTGCCGCCAGTCGCAAAAGCAGAAGCAAAAGTATAAGCTGTGTATGTAGCTTTGTTTCTTTAGTAGGCCTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTACCCTTTCTAATCAAGTATGAATTTTGATTGTGTGAGGATTTCACAGAACATTTGGAGTTGAAGGTAGTTTTTTTTTTGGTAATCTAATTGTATTTGAGAGGCTCGATATCTTTCGTGTGTGTCAATATCTGCAATGTACTTCGTCGAACGATGAACGTAGTTCGAATGTCTTTTTATGTCTATTTTCTTTAATGGTTTAGCAAGTTTGTGCGTTGAAATCTTATCACGAAAAAAATGATCGGTTTTCTTAAGGACGACAACTAACTTATTCTATCATAGAGGTTTAAGAAGATTTATTAGTCTGTTTTTCATTATAGCTTACGTGCTAATCGTCTAAACTAACACTCTAATGCATAATTGAAGCATTCTATCAAAGCATAATTTAATTAATTACGAGA

mRNA sequence

TAGAGTGGGCAAGATGGTAACTTGACATTGTAATAGATAACTAGATAAGGTTCCTTCCTCTGTTTGTAGATTTTGCTGATTCATTTTGTTGGCCATTACTTCCATTTTTTGCTCTGCTCAAATTCTGCAATTACCTTCACAATCCACAAGAAGAAGGAGGAGAAGAAGAAGAACGCCAAATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGGACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCCTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATCGTGTCCTCCGATTCGGCGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTGGCTCCCTATTCCAAGTATGAATATGGATGGTGGGAGGCTTTCTTGCCGCCAGTCGCAAAAGCAGAAGCAAAAGTATAAGCTGTGTATGTAGCTTTGTTTCTTTAGTAGGCCTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTACCCTTTCTAATCAAGTATGAATTTTGATTGTGTGAGGATTTCACAGAACATTTGGAGTTGAAGGTAGTTTTTTTTTTGGTAATCTAATTGTATTTGAGAGGCTCGATATCTTTCGTGTGTGTCAATATCTGCAATGTACTTCGTCGAACGATGAACGTAGTTCGAATGTCTTTTTATGTCTATTTTCTTTAATGGTTTAGCAAGTTTGTGCGTTGAAATCTTATCACGAAAAAAATGATCGGTTTTCTTAAGGACGACAACTAACTTATTCTATCATAGAGGTTTAAGAAGATTTATTAGTCTGTTTTTCATTATAGCTTACGTGCTAATCGTCTAAACTAACACTCTAATGCATAATTGAAGCATTCTATCAAAGCATAATTTAATTAATTACGAGA

Coding sequence (CDS)

ATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGGACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCCTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATCGTGTCCTCCGATTCGGCGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTGGCTCCCTATTCCAAGTATGAATATGGATGGTGGGAGGCTTTCTTGCCGCCAGTCGCAAAAGCAGAAGCAAAAGTATAA

Protein sequence

MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFMKLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV

Homology

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BLAST of Cp4.1LG16g07010 vs. Swiss-Prot
Match: YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1


Query: 96  YYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFMKLRLDRVLAESYE 155
           YY+ +A+ KF+L EEE F+E+L ER R+YGE+NKE DFW VI+P F+       LAE+ +
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNA---PELAEA-K 90

Query: 156 ANSLEEALASTPTNLEF 173
           A + E+ +A   TN  F
Sbjct: 91  AKAPEKNVAIVSTNKSF 102

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BLAST of Cp4.1LG16g07010 vs. TrEMBL
Match: A0A0A0KB63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133820 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 160/232 (68.97%), Postives = 171/232 (73.71%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTV+LVMGSSSAA+AT T   A+KSL +S+IG HNH  T S P  L S S  ++ F S
Sbjct: 1   MLGTVSLVMGSSSAAVATSTHFPALKSLPTSRIGHHNHFPTLSFPFVLPSTSIFTSSFLS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
              SSLS  FNTAIAAVNSD      SADK+ESNKYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SPLSSLSSPFNTAIAAVNSD------SADKQESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPK----------------------------FMKLRLDRVLAE 180
           LRN+ ERNKEQ+FWLVIEPK                            FMKLRLDRVLAE
Sbjct: 121 LRNFSERNKEQNFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 205
           SYEANS+EEALASTPTNLEFEKPE WVAPYSKYEYGWWEAFLPP  KAEAKV
Sbjct: 181 SYEANSIEEALASTPTNLEFEKPENWVAPYSKYEYGWWEAFLPPATKAEAKV 226

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BLAST of Cp4.1LG16g07010 vs. TrEMBL
Match: A0A151R811_CAJCA (Uncharacterized protein ycf54 OS=Cajanus cajan GN=KK1_039959 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-53
Identity = 129/232 (55.60%), Postives = 149/232 (64.22%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSSA- 60
           MLG   L +GSSS  +A         +  +S  G   H    RT SLP+ L S +  +  
Sbjct: 1   MLGVATLTLGSSSTLVAQNHAQQHPTTTLASATGTRRHTVPNRTHSLPMSLVSPTNQNCT 60

Query: 61  FFSSHRGSSLSLR-FNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKE 120
           F SS  G +   R F TA+A+V+SDQ+ SSD   K+ESNKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  FLSSFSGPTTHARPFTTAVASVDSDQLNSSDPPTKDESNKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPK----------------------------FMKLRLD 180
            LFERLR +GERNKEQDFWLVIEPK                            FMKLRLD
Sbjct: 121 QLFERLRLFGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWITFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK 200
           RVL++S+EA SLEEALA  PTNLEFEKPEKWVAPY KYE+GWWE FLPPV K
Sbjct: 181 RVLSDSFEAESLEEALAFNPTNLEFEKPEKWVAPYPKYEFGWWEPFLPPVQK 232

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BLAST of Cp4.1LG16g07010 vs. TrEMBL
Match: A0A0S3S5Q8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G163900 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 124/230 (53.91%), Postives = 150/230 (65.22%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMA-TPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS- 60
           MLG   L +GSS+A +A    Q     +LAS+  G   H    RT+S P+ L S +  S 
Sbjct: 1   MLGMATLTLGSSTAMVAQNHAQQHHATTLASAN-GHRRHSVSNRTYSSPMSLVSPTNKSF 60

Query: 61  AFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKE 120
            F SS + S  +  F TA+A+V+SDQ+ SSD   K E+NKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  TFLSSFKESPRARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPKFMK----------------------------LRLD 180
            LFER+R +GERN+EQDFWLVIEPKF+                             LRLD
Sbjct: 121 QLFERIRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWIKFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV 198
           RVL++S+EA SLEEALA TPT+L+FEKPEKWVAPY KYE GWWE FLPPV
Sbjct: 181 RVLSDSFEAESLEEALAFTPTDLKFEKPEKWVAPYPKYESGWWEPFLPPV 229

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BLAST of Cp4.1LG16g07010 vs. TrEMBL
Match: A0A0L9VCG0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g141000 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 124/230 (53.91%), Postives = 150/230 (65.22%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMA-TPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS- 60
           MLG   L +GSS+A +A    Q     +LAS+  G   H    RT+S P+ L S +  S 
Sbjct: 1   MLGMATLTLGSSTAMVAQNHAQQHHATTLASAN-GHRRHSVSNRTYSSPMSLVSPTNKSF 60

Query: 61  AFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKE 120
            F SS + S  +  F TA+A+V+SDQ+ SSD   K E+NKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  TFLSSFKESPRARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPKFMK----------------------------LRLD 180
            LFER+R +GERN+EQDFWLVIEPKF+                             LRLD
Sbjct: 121 QLFERIRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWIKFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV 198
           RVL++S+EA SLEEALA TPT+L+FEKPEKWVAPY KYE GWWE FLPPV
Sbjct: 181 RVLSDSFEAESLEEALAFTPTDLKFEKPEKWVAPYPKYESGWWEPFLPPV 229

[Close]

BLAST of Cp4.1LG16g07010 vs. TrEMBL
Match: V7BLT3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G082200g PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 123/231 (53.25%), Postives = 150/231 (64.94%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS-A 60
           MLG   L +GSS+  +A     A   +LAS+  G   H    R+ S P+ L S +  S  
Sbjct: 2   MLGMATLTLGSSTTMVAQQQHAA---TLASAN-GHRRHSVSSRSHSFPMSLVSPTHQSFT 61

Query: 61  FFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKEL 120
           F SS +  + +  F TA+A+V+SDQ+ SSD   K E+NKYYF+VANAKFMLDEEEHF+E 
Sbjct: 62  FLSSFKEPAHARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQEQ 121

Query: 121 LFERLRNYGERNKEQDFWLVIEP----------------------------KFMKLRLDR 180
           LFERLR +GERN+EQDFWLVIEP                            KFMKLRLDR
Sbjct: 122 LFERLRLFGERNQEQDFWLVIEPKFLDKFPNITNRLKRPAVALVSTNGTWIKFMKLRLDR 181

Query: 181 VLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK 200
           VL++S+EA SLEEALA  PT+L+FEKPEKWVAPY KYE+GWW+ FLPPV K
Sbjct: 182 VLSDSFEAESLEEALAFNPTDLKFEKPEKWVAPYPKYEFGWWQPFLPPVQK 228

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BLAST of Cp4.1LG16g07010 vs. TAIR10
Match: AT5G58250.1 (AT5G58250.1 unknown protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-39
Identity = 95/180 (52.78%), Postives = 110/180 (61.11%), Query Frame = 1


Query: 51  ASGSSAFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEE 110
           +S S +  SSH  SS    F TA  ++         S +K ES KY+FLVANAKFMLDEE
Sbjct: 40  SSPSLSLPSSHFSSS----FKTAATSIEQQS-----SVNKGESTKYHFLVANAKFMLDEE 99

Query: 111 EHFKELLFERLRNYGERNKEQDFWLVIEPK----------------------------FM 170
           EHF+E LFERLR +GER   QDFWLVIEPK                            FM
Sbjct: 100 EHFQEQLFERLRYFGERELVQDFWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWITFM 159

Query: 171 KLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEA 203
           KLRLDRVL +S+EA SL+EALAS PT LEF+KP+ WVAPY KYE GWW+ FLP V +  A
Sbjct: 160 KLRLDRVLYDSFEATSLDEALASNPTTLEFDKPKNWVAPYPKYEPGWWDTFLPKVTQESA 210

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BLAST of Cp4.1LG16g07010 vs. NCBI nr
Match: gi|659112528|ref|XP_008456263.1| (PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo])

HSP 1 Score: 284.6 bits (727), Expect = 1.3e-73
Identity = 168/232 (72.41%), Postives = 173/232 (74.57%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGT NLVMGSSSAA+AT T  AAVKSL +S IG HN   T SLPL L S S  S+ F S
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
              SSLS  FNTAIAAVNSD      SADK+ES KYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SPLSSLSSPFNTAIAAVNSD------SADKQESIKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPK----------------------------FMKLRLDRVLAE 180
           LRNYGERNKEQDFWLVIEPK                            FMKLRLDRVLAE
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 205
           SYEANS+EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV KAEAKV
Sbjct: 181 SYEANSIEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

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BLAST of Cp4.1LG16g07010 vs. NCBI nr
Match: gi|449444326|ref|XP_004139926.1| (PREDICTED: uncharacterized protein LOC101220505 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.6e-71
Identity = 160/232 (68.97%), Postives = 171/232 (73.71%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60
           MLGTV+LVMGSSSAA+AT T   A+KSL +S+IG HNH  T S P  L S S  ++ F S
Sbjct: 1   MLGTVSLVMGSSSAAVATSTHFPALKSLPTSRIGHHNHFPTLSFPFVLPSTSIFTSSFLS 60

Query: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFER 120
              SSLS  FNTAIAAVNSD      SADK+ESNKYYFLVANAKFMLDEEEHFKELLFER
Sbjct: 61  SPLSSLSSPFNTAIAAVNSD------SADKQESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRNYGERNKEQDFWLVIEPK----------------------------FMKLRLDRVLAE 180
           LRN+ ERNKEQ+FWLVIEPK                            FMKLRLDRVLAE
Sbjct: 121 LRNFSERNKEQNFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAE 180

Query: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 205
           SYEANS+EEALASTPTNLEFEKPE WVAPYSKYEYGWWEAFLPP  KAEAKV
Sbjct: 181 SYEANSIEEALASTPTNLEFEKPENWVAPYSKYEYGWWEAFLPPATKAEAKV 226

[Close]

BLAST of Cp4.1LG16g07010 vs. NCBI nr
Match: gi|1012327010|gb|KYP38760.1| (Uncharacterized protein ycf54 [Cajanus cajan])

HSP 1 Score: 216.9 bits (551), Expect = 3.4e-53
Identity = 129/232 (55.60%), Postives = 149/232 (64.22%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSSA- 60
           MLG   L +GSSS  +A         +  +S  G   H    RT SLP+ L S +  +  
Sbjct: 1   MLGVATLTLGSSSTLVAQNHAQQHPTTTLASATGTRRHTVPNRTHSLPMSLVSPTNQNCT 60

Query: 61  FFSSHRGSSLSLR-FNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKE 120
           F SS  G +   R F TA+A+V+SDQ+ SSD   K+ESNKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  FLSSFSGPTTHARPFTTAVASVDSDQLNSSDPPTKDESNKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPK----------------------------FMKLRLD 180
            LFERLR +GERNKEQDFWLVIEPK                            FMKLRLD
Sbjct: 121 QLFERLRLFGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWITFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAK 200
           RVL++S+EA SLEEALA  PTNLEFEKPEKWVAPY KYE+GWWE FLPPV K
Sbjct: 181 RVLSDSFEAESLEEALAFNPTNLEFEKPEKWVAPYPKYEFGWWEPFLPPVQK 232

[Close]

BLAST of Cp4.1LG16g07010 vs. NCBI nr
Match: gi|1009116442|ref|XP_015874773.1| (PREDICTED: uncharacterized protein LOC107411662 [Ziziphus jujuba])

HSP 1 Score: 204.5 bits (519), Expect = 1.7e-49
Identity = 122/235 (51.91%), Postives = 148/235 (62.98%), Query Frame = 1


Query: 12  SSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHR--------- 71
           S+AA +    C    + A +     ++ +  SLP+  A+ + +  FF  +          
Sbjct: 2   SAAASSLGPGCLTASAKAKTHFHNSHNAKAVSLPVS-ANRNSNHTFFPFNSKVLAFPPPL 61

Query: 72  --GSSLSLRFNTAIAAVNSDQIVSSDSAD---KEESNKYYFLVANAKFMLDEEEHFKELL 131
              +  S    TA+AAV+SDQI SSD +D   ++E+ ++YF+VANAKFMLDEEEHFKELL
Sbjct: 62  SISTKSSSSVKTAVAAVDSDQISSSDPSDNSKQQEAKRFYFVVANAKFMLDEEEHFKELL 121

Query: 132 FERLRNYGERNKEQDFWLVIEPK----------------------------FMKLRLDRV 191
           FERLR YGERNKEQDFWLVIEPK                            FMKLRLDRV
Sbjct: 122 FERLRLYGERNKEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGPWITFMKLRLDRV 181

Query: 192 LAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 205
           L+ESY A S+EEALAS PTN+EFEKPEKWVAPY KYEYGWWEAFLPP +K EAKV
Sbjct: 182 LSESYAAESIEEALASNPTNIEFEKPEKWVAPYPKYEYGWWEAFLPPGSKEEAKV 235

[Close]

BLAST of Cp4.1LG16g07010 vs. NCBI nr
Match: gi|920711502|gb|KOM52751.1| (hypothetical protein LR48_Vigan09g141000 [Vigna angularis])

HSP 1 Score: 204.1 bits (518), Expect = 2.3e-49
Identity = 124/230 (53.91%), Postives = 150/230 (65.22%), Query Frame = 1


Query: 1   MLGTVNLVMGSSSAAMA-TPTQCAAVKSLASSKIGLHNHC---RTFSLPLGLASASGSS- 60
           MLG   L +GSS+A +A    Q     +LAS+  G   H    RT+S P+ L S +  S 
Sbjct: 1   MLGMATLTLGSSTAMVAQNHAQQHHATTLASAN-GHRRHSVSNRTYSSPMSLVSPTNKSF 60

Query: 61  AFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKE 120
            F SS + S  +  F TA+A+V+SDQ+ SSD   K E+NKYYF+VANAKFMLDEEEHF+E
Sbjct: 61  TFLSSFKESPRARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQE 120

Query: 121 LLFERLRNYGERNKEQDFWLVIEPKFMK----------------------------LRLD 180
            LFER+R +GERN+EQDFWLVIEPKF+                             LRLD
Sbjct: 121 QLFERIRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWIKFMKLRLD 180

Query: 181 RVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV 198
           RVL++S+EA SLEEALA TPT+L+FEKPEKWVAPY KYE GWWE FLPPV
Sbjct: 181 RVLSDSFEAESLEEALAFTPTDLKFEKPEKWVAPYPKYESGWWEPFLPPV 229

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g07010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YC54L_SYNY3	1.9e-08	48.05	Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE...	[more]

BLAST of Cp4.1LG16g07010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB63_CUCSA	1.1e-71	68.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133820 PE=4 SV=1	[more]
A0A151R811_CAJCA	2.4e-53	55.60	Uncharacterized protein ycf54 OS=Cajanus cajan GN=KK1_039959 PE=4 SV=1	[more]
A0A0S3S5Q8_PHAAN	1.6e-49	53.91	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G163900 PE=...	[more]
A0A0L9VCG0_PHAAN	1.6e-49	53.91	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g141000 PE=4 SV=1	[more]
V7BLT3_PHAVU	1.6e-49	53.25	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G082200g PE=4 SV=1	[more]

BLAST of Cp4.1LG16g07010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58250.1	1.7e-39	52.78	unknown protein	[more]

BLAST of Cp4.1LG16g07010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112528\|ref\|XP_008456263.1\|	1.3e-73	72.41	PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo]	[more]
gi\|449444326\|ref\|XP_004139926.1\|	1.6e-71	68.97	PREDICTED: uncharacterized protein LOC101220505 [Cucumis sativus]	[more]
gi\|1012327010\|gb\|KYP38760.1\|	3.4e-53	55.60	Uncharacterized protein ycf54 [Cajanus cajan]	[more]
gi\|1009116442\|ref\|XP_015874773.1\|	1.7e-49	51.91	PREDICTED: uncharacterized protein LOC107411662 [Ziziphus jujuba]	[more]
gi\|920711502\|gb\|KOM52751.1\|	2.3e-49	53.91	hypothetical protein LR48_Vigan09g141000 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019616	Uncharacterised_Ycf54

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g07010.1	Cp4.1LG16g07010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019616	Uncharacterised protein family Ycf54	PFAM	PF10674	Ycf54	coord: 95..143 score: 3.3
None	No IPR available	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 67..203 score: 4.0
None	No IPR available	PANTHER	PTHR35319:SF2	SUBFAMILY NOT NAMED	coord: 67..203 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g07010	Cucsa.118800	Cucumber (Gy14) v1	cgycpeB0290
Cp4.1LG16g07010	CmaCh20G002970	Cucurbita maxima (Rimu)	cmacpeB564
Cp4.1LG16g07010	CmaCh02G006860	Cucurbita maxima (Rimu)	cmacpeB624
Cp4.1LG16g07010	CmoCh02G006840	Cucurbita moschata (Rifu)	cmocpeB574
Cp4.1LG16g07010	CmoCh20G003230	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g07010	Cla013429	Watermelon (97103) v1	cpewmB303
Cp4.1LG16g07010	Csa6G133820	Cucumber (Chinese Long) v2	cpecuB282
Cp4.1LG16g07010	MELO3C019598	Melon (DHL92) v3.5.1	cpemeB247
Cp4.1LG16g07010	ClCG02G018930	Watermelon (Charleston Gray)	cpewcgB266
Cp4.1LG16g07010	CSPI06G10810	Wild cucumber (PI 183967)	cpecpiB284
Cp4.1LG16g07010	Lsi10G014930	Bottle gourd (USVL1VR-Ls)	cpelsiB219
Cp4.1LG16g07010	MELO3C019598.2	Melon (DHL92) v3.6.1	cpemedB301
Cp4.1LG16g07010	CsaV3_6G013260	Cucumber (Chinese Long) v3	cpecucB0349
Cp4.1LG16g07010	Bhi10G000706	Wax gourd	cpewgoB0353
Cp4.1LG16g07010	CsGy6G010900	Cucumber (Gy14) v2	cgybcpeB756
Cp4.1LG16g07010	Carg11748	Silver-seed gourd	carcpeB1473
Cp4.1LG16g07010	Carg03406	Silver-seed gourd	carcpeB0465

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG16g07010	Cp4.1LG05g10160	Cucurbita pepo (Zucchini)	cpecpeB308

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g07010	Cucurbita maxima (Rimu)	cmacpeB625