Carg02040 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02040
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_003 : 1856268 .. 1857879 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCGTAGACTTAATGATTAAATAACTTAACGATTAAATAGTTTAATAGAATGTACATAATTTAACTGGTGTCTATTTAACTCGTTGGTTTTCGTTTATTTTCTTGGAAAAACATCAATTGAACTAAACATTATATAATTTAGACATCACGTCATTTACGGTATGTATTGTTATAATTATCATTATTTAGTCGTGTACTTCATTTCAATAAATCATATGATAATTTATCATTCTCTTTCAGTTTAAGTATACGATAAGATGTCATGTCATATATTTTTTTTTTTGGTAAATTAATCCTTCCAGTTTTTCGTCCGTCTTAAAATTTTAATTATTTTTCTCATTTTTTTTATGTGTGTTTTCTATTTTCATATTAAAAAACTAAATATCTATAATTTGGTTCTCCTTGTTTTCAAATTTAAATATCAAATATGTTTTTTTTTTTTCATCATGACAGCCTATAAAAGAAAAGATAAAATTCTGATGAAATTTAAATAAGAAAGAAAAAAAACACCAAAATTAATAAATGATATTGTTCCAAATATTATAACGGAAATACAATTATTAAAAAAAAAAACTAAAAAATGTAAAAATTAATTGACATCCTGGGATGAATCTATGTGACTGCACAACTCTCGAACGCTCTTCCACCTCGATCGACTGTTTGCAAACACCTTAAAAATAAAGGAATGAGTATAAAATATACTTCGTAAGTATGACGTAGCAAGTGACCACAAACTTTACTCTAAACTTTAAGGATGGATTTAGCATGATAATTTGTCTTTATTCACCTTCCTATTTGTATTTTAGAATTTTAATCCTTCAAACTTAGTAACCAAACAAGACTTTATGATTTTAACTTATACAGAAGTTAATTTAAAATTTTAATTCCAGTTAAAGTAAATGTCTAAAACTTTTATGTTCCAAACCTACGTTATATTTTGAACTTGTAAAATCATATTTAATTCAACTTTTTTATTGGTATAAATTTATTTAACTGATACAATAATTATAGTCTAAAATTAGACGTAAACGGATTAATTATTGAATGAAATAAACCAAAATAATATTTAAGTCATAAAATATAAAAATCGCTCCCGCGGTGCGAAATTGTTGAAGCCCCACGTATATAACTGTAATTTTAAAATTGGTTGGGAAACGAAGGAATCATCTTTCATAAGAATTGGCGCGGGAAGATCAAGGAGAAAAGCAGAAAGAAAATGTCGTGTTCAAGGGCGTCGGATTAGGGTTGCCTTCTACGAATGCCAATTCCAGTTGCAATTTTCCTTCCAATAAGAATCTTCCTTCAAACCGTGAATTTCAACCAATTTCACTTCGTTCTCGTGTATTGCTTTCTGAAAATGGCGACGATGCTAAGTTCGATGCCGATTGCACTTTTACATCAACTAGAGGAATAGAGAAGCTGGTGCCGATGGCTCTGGAACTTCTGCTAGAAGTCGTCGATTGCTTAAGCTTCGCGAAGAGAAGCGCAAACAGGAACATGATCGTCTCCACAGTTATCTTGCCGTCTTTTCTGTATGATTGTGTGTTGCGTTGTTTTCACTCTGTTTGTTTGCTAATGAAATCGCCGGGAAAACGGCTGATTGTTTGA

mRNA sequence

ATGTATCAATTGGCGCGGGAAGATCAAGGAGAAAAGCAGAAAGAAAATGTCGTGTTCAAGGGCGTCGGATTAGGGTTGCCTTCTACGAATGCCAATTCCAGTTGCAATTTTCCTTCCAATAAGAATCTTCCTTCAAACCGTGAATTTCAACCAATTTCACTTCGTTCTCGTGTATTGCTTTCTGAAAATGGCGACGATGCTAAGTTCGATGCCGATTGCACTTTTACATCAACTAGAGGAATAGAGAAGCTGGTGCCGATGGCTCTGGAACTTCTGCTAGAAGTCGTCGATTGCTTAAGCTTCGCGAAGAGAAGCGCAAACAGGAACATGATCGTCTCCACAGTTATCTTGCCGTCTTTTCTGTATGATTGTGTGTTGCGTTGTTTTCACTCTGTTTGTTTGCTAATGAAATCGCCGGGAAAACGGCTGATTGTTTGA

Coding sequence (CDS)

ATGTATCAATTGGCGCGGGAAGATCAAGGAGAAAAGCAGAAAGAAAATGTCGTGTTCAAGGGCGTCGGATTAGGGTTGCCTTCTACGAATGCCAATTCCAGTTGCAATTTTCCTTCCAATAAGAATCTTCCTTCAAACCGTGAATTTCAACCAATTTCACTTCGTTCTCGTGTATTGCTTTCTGAAAATGGCGACGATGCTAAGTTCGATGCCGATTGCACTTTTACATCAACTAGAGGAATAGAGAAGCTGGTGCCGATGGCTCTGGAACTTCTGCTAGAAGTCGTCGATTGCTTAAGCTTCGCGAAGAGAAGCGCAAACAGGAACATGATCGTCTCCACAGTTATCTTGCCGTCTTTTCTGTATGATTGTGTGTTGCGTTGTTTTCACTCTGTTTGTTTGCTAATGAAATCGCCGGGAAAACGGCTGATTGTTTGA

Protein sequence

MYQLAREDQGEKQKENVVFKGVGLGLPSTNANSSCNFPSNKNLPSNREFQPISLRSRVLLSENGDDAKFDADCTFTSTRGIEKLVPMALELLLEVVDCLSFAKRSANRNMIVSTVILPSFLYDCVLRCFHSVCLLMKSPGKRLIV

Homology

[Close]

BLAST of Carg02040 vs. NCBI nr
Match: XP_022139316.1 (uncharacterized protein LOC111010260 isoform X2 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 7.5e-11
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 18 VFKGVGLGLPSTNANSSCNFPSN-----KNXXXNREFQPISLRSRVLLSENGDDAKFDAD 77
          VFKGVGLGL   NANSSCNFPSN     ++   N EF PISLR R LLSENG+D+KFD  
Sbjct: 3  VFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFDTR 62

Query: 78 CTFTST 79
           + T T
Sbjct: 63 SSSTPT 68

[Close]

BLAST of Carg02040 vs. NCBI nr
Match: XP_022139315.1 (uncharacterized protein LOC111010260 isoform X1 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 7.5e-11
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 18 VFKGVGLGLPSTNANSSCNFPSN-----KNXXXNREFQPISLRSRVLLSENGDDAKFDAD 77
          VFKGVGLGL   NANSSCNFPSN     ++   N EF PISLR R LLSENG+D+KFD  
Sbjct: 3  VFKGVGLGLAFANANSSCNFPSNPRIFLESVTSNCEFPPISLRPRALLSENGNDSKFDTR 62

Query: 78 CTFTST 79
           + T T
Sbjct: 63 SSSTPT 68

[Close]

BLAST of Carg02040 vs. NCBI nr
Match: XP_008445913.1 (PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-09
Identity = 40/66 (60.61%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 18 VFKGVGLGLPSTNANSSCNFPSNKNXXXNR-----EFQPISLRSRVLLSENGDDAKFDAD 77
          V  GVGLGL  TN NS+CNF SN            EF PISLRSR LLSENGDD+KFDA 
Sbjct: 3  VLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFDAM 62

Query: 78 CTFTST 79
           T T T
Sbjct: 63 STSTPT 68

[Close]

BLAST of Carg02040 vs. NCBI nr
Match: XP_004147093.1 (PREDICTED: uncharacterized protein LOC101211689 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-09
Identity = 39/66 (59.09%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 18 VFKGVGLGLPSTNANSSCNFPSNKNXXXNR-----EFQPISLRSRVLLSENGDDAKFDAD 77
          VF G+GLGL  TN NS+C F SN            EF+PISLRSR LLSENGDD+KFDA 
Sbjct: 3  VFNGIGLGLAFTNPNSTCIFHSNTRFFPQSLTSIPEFRPISLRSRALLSENGDDSKFDAV 62

Query: 78 CTFTST 79
           T T T
Sbjct: 63 STSTPT 68

[Close]

BLAST of Carg02040 vs. NCBI nr
Match: XP_022944992.1 (uncharacterized protein LOC111449363 [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   QLAREDQGE-KQKENVVFKGVGLGLPSTNANSSCNFPSN-----KNXXXNREFQPISLRS 62
           +++ E  G+ K K   VF+ +GLGL   NA S+CNF SN     K+   NREFQ ISLRS
Sbjct: 26  RVSEEQAGKGKNKRMSVFESIGLGLAFRNAASTCNFLSNPGIFLKSVASNREFQQISLRS 85

Query: 63  RVLLSENGDDAKFDADCTFTST 79
           R +LSENG ++ FDA    T T
Sbjct: 86  RAMLSENGHESMFDAKSASTPT 107

[Close]

BLAST of Carg02040 vs. TrEMBL
Match: tr|A0A1S3BDB3|A0A1S3BDB3_CUCME (uncharacterized protein LOC103488796 OS=Cucumis melo OX=3656 GN=LOC103488796 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 40/66 (60.61%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 18 VFKGVGLGLPSTNANSSCNFPSNKNXXXNR-----EFQPISLRSRVLLSENGDDAKFDAD 77
          V  GVGLGL  TN NS+CNF SN            EF PISLRSR LLSENGDD+KFDA 
Sbjct: 3  VLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFDAM 62

Query: 78 CTFTST 79
           T T T
Sbjct: 63 STSTPT 68

[Close]

BLAST of Carg02040 vs. TrEMBL
Match: tr|A0A0A0KRT0|A0A0A0KRT0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G580640 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 18 VFKGVGLGLPSTNANSSCNFPSNKNXXXNR-----EFQPISLRSRVLLSENGDDAK 69
          VF G+GLGL  TN NS+C F SN            EF+PISLRSR LLSENGDD+K
Sbjct: 3  VFNGIGLGLAFTNPNSTCIFHSNTRFFPQSLTSIPEFRPISLRSRALLSENGDDSK 58

The following BLAST results are available for this feature:

BLAST of Carg02040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139316.1	7.5e-11	62.12	uncharacterized protein LOC111010260 isoform X2 [Momordica charantia]	[more]
XP_022139315.1	7.5e-11	62.12	uncharacterized protein LOC111010260 isoform X1 [Momordica charantia]	[more]
XP_008445913.1	2.4e-09	60.61	PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo]	[more]
XP_004147093.1	4.1e-09	59.09	PREDICTED: uncharacterized protein LOC101211689 [Cucumis sativus]	[more]
XP_022944992.1	2.1e-08	48.78	uncharacterized protein LOC111449363 [Cucurbita moschata]	[more]

BLAST of Carg02040 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg02040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDB3\|A0A1S3BDB3_CUCME	1.6e-09	60.61	uncharacterized protein LOC103488796 OS=Cucumis melo OX=3656 GN=LOC103488796 PE=...	[more]
tr\|A0A0A0KRT0\|A0A0A0KRT0_CUCSA	1.7e-06	58.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G580640 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02040-RA	Carg02040-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02040	Cla022886	Watermelon (97103) v1	carwmB0845
Carg02040	Csa5G580640	Cucumber (Chinese Long) v2	carcuB0861
Carg02040	MELO3C011773	Melon (DHL92) v3.5.1	carmeB0832
Carg02040	ClCG11G012820	Watermelon (Charleston Gray)	carwcgB0810
Carg02040	CSPI05G20460	Wild cucumber (PI 183967)	carcpiB0881
Carg02040	Cucsa.281100	Cucumber (Gy14) v1	carcgyB0964
Carg02040	CmaCh04G012760	Cucurbita maxima (Rimu)	carcmaB1170
Carg02040	CmaCh18G008410	Cucurbita maxima (Rimu)	carcmaB1166
Carg02040	CmoCh18G008450	Cucurbita moschata (Rifu)	carcmoB1134
Carg02040	Lsi04G007650	Bottle gourd (USVL1VR-Ls)	carlsiB765
Carg02040	Cp4.1LG09g04590	Cucurbita pepo (Zucchini)	carcpeB1172
Carg02040	CsGy5G019980	Cucumber (Gy14) v2	carcgybB0834
Carg02040	MELO3C011773.2	Melon (DHL92) v3.6.1	carmedB0844
Carg02040	CsaV3_5G029220	Cucumber (Chinese Long) v3	carcucB0885
Carg02040	Cla97C11G218700	Watermelon (97103) v2	carwmbB0873

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02040	Carg14425	Silver-seed gourd	carcarB592

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02040	Wax gourd	carwgoB0984
Carg02040	Silver-seed gourd	carcarB591
Carg02040	Cucurbita maxima (Rimu)	carcmaB1167
Carg02040	Cucurbita moschata (Rifu)	carcmoB1135
Carg02040	Cucurbita moschata (Rifu)	carcmoB1138
Carg02040	Cucurbita pepo (Zucchini)	carcpeB1169
Carg02040	Cucurbita pepo (Zucchini)	carcpeB1177