CmaCh04G012760 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G012760
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 6516995 .. 6518950 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATACAGAAAGGTTTTACACACGAGGTTCCAAAATGTATAAACCCTAACTATCCTCAGATACGGACGGGTTTGAAGATTAATCGCGAAAACAACTGATTGAGGGTGGGGATAAAAACAATAAAACCTTACGAATTCACAAAGAAGTTGAAGCTCGTCTTCAAGAAGGTGCTGGCCTTCCTTGACCTTAGCGATCCACTGGTCCAAATCCATGTAAGAAGAGCGACAATGGAGAACGGAACGAGAAGAAAAGGCAACCCTAGAGAGAGAAAACTCCGATTAATTATATGGAGGCTGTGATTAGCCGATTGAAATTGAAATTGAAATTTCAGTGGAACGAGCCGACGCTTACCAAACAGATCCGTCCAACCCACCGCCCCCATTTTGTTAAAATTTCAGAGAAAAACACCTCTGTTTTATAAATAAAATTTTTGTAAAAATAAATAAATCAATCAAAATAATTATTCATTTCTTAAATTGATTTTTTGTGTCATCCTTATCTAATTAATTCAAACTTTTATAAAATTTTTTAAGTTCTAAATTCGTTTCCCTTCATGTATCCAACCATGTAACTAATTTAACTGATGTCTATTCAACTCATTAGTTTCCGTTTATTTTTTTGTCCATGGAAAAATATCTGATCGAACTAAATATTATATAATTTAGACATCGCACCATTTTAATGTATGTATTATTATAATTGTTGTTGTTTAATCGCGTACTTCATTTCAATAAATCATCATCCGATTATTTATCGTTCATCTTTCAATAGGCTTAATTGCTGCCTCTAAAAAAAATAAAATTCTGAAAAAATTTAAATAAGAAAGAAAAATAAAATAAACAAGCACCAAAAATTAAATCAATTTATTCAAAATATTATAGTGGAAATACAATTATAAATAAATAAATAAATAAACAAACAAACAAAAAATTTTAAAAATGTAAAAATTAACTGACATTCCGGAACCATAAAATATATTTGGTAAACAACTTATTTGTAGACTCTCCAAAGGCTTTATTTAAACTCTAAGTATGGATAGTTTTACACGGATTTAATATAATACTTTATCTTTATTCACCTCCTATTTATATTTTAGAATTTTAACCTTTAAATTTAGTAACTAAAGCATGCTTTATAATTTTAACTTAATTTAAAGTTTTAATTTCAGCAACTCAATTTGTGACATTTTAAAACTTTTATATTCCAAACCTACCAAATACGTTATATTTTCAACTTGTAAAATCATATTTAATTCAACTTTTTTATTGGTATAAATTTATTTAAGTGATACAATAATTATACAGTCTAAAATTAGACGTAAACGGATTAATTATTGAATGAGATGAACAAAAAATAATATTTAACTCATAAAATATAAAAATCGCTCCCGCGGTGCGAAATTGTTGAAGCCCCACGTATATAACTGTAATTTTAAAATTGATTGGGAAACGAGGGAATCATCTTTCATAAGAATTGGCGCGACAGTTCACGAAGAACAAGGAGAAAAGCAGAAAGAAAATGTCGTGTTCAAGGGCGTCGGATTAGGGTTGCTTTCTACGAATGCCAATTCCAGTTGCAATTTTCCTTCTAATAAGAATCTTCCTTCAAACCGTGAATTTCAACCAATTTCACTTCGTTCTCGTGTGTTGCTTTCTGAAAATGGCGACGATTCTAAGTTCGATGCCGATAGCACTTCTACATCAACTAGAGGAATAGAGAAGCTGGTGCCGATGGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTTAAGCTTCGCGAAGAGAAGTGCAAACAGGAACATGATCGTCTCCACAATTATCTTGCCGTCTTTTCTGTATGATTGTGTGTTGCGTTGTTTTCATTCTGTTTGTTTGCTAGTGAAATCGCCGGGAAAACGGCCGACTGTTAGAAGATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCTTAG

mRNA sequence

ATGAAGATACAGAAAGTTCACGAAGAACAAGGAGAAAAGCAGAAAGAAAATGTCGTGTTCAAGGGCGTCGGATTAGGGTTGCTTTCTACGAATGCCAATTCCAGTTGCAATTTTCCTTCTAATAAGAATCTTCCTTCAAACCGTGAATTTCAACCAATTTCACTTCGTTCTCGTGTGTTGCTTTCTGAAAATGGCGACGATTCTAAGTTCGATGCCGATAGCACTTCTACATCAACTAGAGGAATAGAGAAGCTGGTGCCGATGGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTTAAGCTTCGCGAAGAGAAGTGCAAACAGGAACATGATCGTCTCCACAATTATCTTGCCGTCTTTTCTGTATGATTGTGTGTTGCGTTGTTTTCATTCTGTTTGTTTGCTAGTGAAATCGCCGGGAAAACGGCCGACTGTTAGAAGATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCTTAG

Coding sequence (CDS)

ATGAAGATACAGAAAGTTCACGAAGAACAAGGAGAAAAGCAGAAAGAAAATGTCGTGTTCAAGGGCGTCGGATTAGGGTTGCTTTCTACGAATGCCAATTCCAGTTGCAATTTTCCTTCTAATAAGAATCTTCCTTCAAACCGTGAATTTCAACCAATTTCACTTCGTTCTCGTGTGTTGCTTTCTGAAAATGGCGACGATTCTAAGTTCGATGCCGATAGCACTTCTACATCAACTAGAGGAATAGAGAAGCTGGTGCCGATGGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTTAAGCTTCGCGAAGAGAAGTGCAAACAGGAACATGATCGTCTCCACAATTATCTTGCCGTCTTTTCTGTATGATTGTGTGTTGCGTTGTTTTCATTCTGTTTGTTTGCTAGTGAAATCGCCGGGAAAACGGCCGACTGTTAGAAGATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCTTAG

Protein sequence

MKIQKVHEEQGEKQKENVVFKGVGLGLLSTNANSSCNFPSNKNLPSNREFQPISLRSRVLLSENGDDSKFDADSTSTSTRGIEKLVPMALEPLLEVVDCLSFAKRSANRNMIVSTIILPSFLYDCVLRCFHSVCLLVKSPGKRPTVRRCLQKRGGISRCS
Homology
[Close]
BLAST of CmaCh04G012760 vs. TrEMBL
Match: A0A0A0KRT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580640 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 75
          VF G+GLGL  TN NS+C F SN     ++L S  EF+PISLRSR LLSENGDDSK   D
Sbjct: 3  VFNGIGLGLAFTNPNSTCIFHSNTRFFPQSLTSIPEFRPISLRSRALLSENGDDSKVLED 62

[Close]
BLAST of CmaCh04G012760 vs. NCBI nr
Match: gi|659090247|ref|XP_008445913.1| (PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 45/66 (68.18%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 78
          V  GVGLGL  TN NS+CNF SN     ++L S  EF PISLRSR LLSENGDDSKFDA 
Sbjct: 3  VLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFDAM 62

Query: 79 STSTST 80
          STST T
Sbjct: 63 STSTPT 68

[Close]
BLAST of CmaCh04G012760 vs. NCBI nr
Match: gi|449458716|ref|XP_004147093.1| (PREDICTED: uncharacterized protein LOC101211689 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 1 

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 78
          VF G+GLGL  TN NS+C F SN     ++L S  EF+PISLRSR LLSENGDDSKFDA 
Sbjct: 3  VFNGIGLGLAFTNPNSTCIFHSNTRFFPQSLTSIPEFRPISLRSRALLSENGDDSKFDAV 62

Query: 79 STSTST 80
          STST T
Sbjct: 63 STSTPT 68

[Close]
BLAST of CmaCh04G012760 vs. NCBI nr
Match: gi|700196402|gb|KGN51579.1| (hypothetical protein Csa_5G580640 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 19 VFKGVGLGLLSTNANSSCNFPSN-----KNLPSNREFQPISLRSRVLLSENGDDSKFDAD 75
          VF G+GLGL  TN NS+C F SN     ++L S  EF+PISLRSR LLSENGDDSK   D
Sbjct: 3  VFNGIGLGLAFTNPNSTCIFHSNTRFFPQSLTSIPEFRPISLRSRALLSENGDDSKVLED 62

The following BLAST results are available for this feature:
BLAST of CmaCh04G012760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRT0_CUCSA9.0e-0860.66Uncharacterized protein OS=Cucumis sativus GN=Csa_5G580640 PE=4 SV=1[more]
BLAST of CmaCh04G012760 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090247|ref|XP_008445913.1|1.1e-1168.18PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo][more]
gi|449458716|ref|XP_004147093.1|1.9e-1166.67PREDICTED: uncharacterized protein LOC101211689 [Cucumis sativus][more]
gi|700196402|gb|KGN51579.1|1.3e-0760.66hypothetical protein Csa_5G580640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010207 photosystem II assembly
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012760.1CmaCh04G012760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G012760Cucsa.281100Cucumber (Gy14) v1cgycmaB0779
CmaCh04G012760Csa5G580640Cucumber (Chinese Long) v2cmacuB726
CmaCh04G012760MELO3C011773Melon (DHL92) v3.5.1cmameB652
CmaCh04G012760CSPI05G20460Wild cucumber (PI 183967)cmacpiB733
CmaCh04G012760CmoCh18G008450Cucurbita moschata (Rifu)cmacmoB713
CmaCh04G012760Lsi04G007650Bottle gourd (USVL1VR-Ls)cmalsiB676
CmaCh04G012760Cp4.1LG01g10080Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G012760Cp4.1LG09g04590Cucurbita pepo (Zucchini)cmacpeB697
CmaCh04G012760MELO3C011773.2Melon (DHL92) v3.6.1cmamedB739
CmaCh04G012760CsaV3_5G029220Cucumber (Chinese Long) v3cmacucB0863
CmaCh04G012760Cla97C11G218700Watermelon (97103) v2cmawmbB725
CmaCh04G012760CsGy5G019980Cucumber (Gy14) v2cgybcmaB650
CmaCh04G012760Carg14425Silver-seed gourdcarcmaB1014
CmaCh04G012760Carg02040Silver-seed gourdcarcmaB1170
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G012760CmaCh18G008410Cucurbita maxima (Rimu)cmacmaB407
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G012760Silver-seed gourdcarcmaB1015
CmaCh04G012760Wax gourdcmawgoB0892
CmaCh04G012760Wax gourdcmawgoB0905
CmaCh04G012760Cucurbita maxima (Rimu)cmacmaB402
CmaCh04G012760Cucurbita moschata (Rifu)cmacmoB706
CmaCh04G012760Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G012760Melon (DHL92) v3.5.1cmameB633
CmaCh04G012760Watermelon (Charleston Gray)cmawcgB621
CmaCh04G012760Watermelon (97103) v1cmawmB728
CmaCh04G012760Cucurbita pepo (Zucchini)cmacpeB700