CSPI07G07890 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G07890
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 5640757 .. 5641630 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCCAGCTACTATAAATACAAACAAACAGATTAGGGCAGAGAAGAAGAAGAAGAAGACGACGACTAAGAAAGAACATTTCTCCAAAAAGAAAAAAAAAAAAAAAAGAAAAGGAAAAAAGAACGACGCGGAAAATTGAGAGAAACAGAGAAAATCGTTTCGAAATTTCTCAATCTGAAAGAAACCAGAAATCGAAAGCACACGTTCTTCAATCCGGCGGAGATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAAATTCATCCTCCGCTGCCGTCCGCGGCGGCGATGTGGCGATGTTCGTTCAAAGTTAGTGTGAATTTTGTTTTTTTTTTTGTTTAGTAATTAAATGGAGGTATTATTGTAATTGACCTCTCTATTGGAAATAATCCAATTATCTTCTTTTTTTAGTACGAAATTACTCTCTCTCTCTCTCTTATCTGGGTTAGTACGAAACTATCGAATTGTTATTTGGTTGTAATCTGTTGGTTTTATCATCATTTTGACGCCGGACCTGAAAGTCGCGCTTTAACTTCAATTATGTTCTTTCTTTCTTTTTCTTTTTTTTTTTAAAAAAAGAAAATGTATGAACTGGATGGGTATTTGTGTAAATATTGTAGAATTTAAGGGACGAGGTGTGGAATATAGTTATTATCCAATGGTTTATGTGGAATTACAGAAGTTTATTTTGTCCACTTCCCCGATTTGAATTGAGTTCTTTCTTTTCTTTTCTTTTTTT

mRNA sequence

ATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA

Coding sequence (CDS)

ATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA
Homology
[Close]
BLAST of CSPI07G07890 vs. TrEMBL
Match: A0A0A0K3A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074910 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]
BLAST of CSPI07G07890 vs. TrEMBL
Match: A0A0D2SML3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G239600 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-06
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 57
          M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1  MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

[Close]
BLAST of CSPI07G07890 vs. TAIR10
Match: AT3G19030.1 (AT3G19030.1 unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 7.8e-06
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 4  QRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTA-GGR------VPVPFVGF 55
          Q+LE+C+EL+++A+ FV  VAESV +   +   P +LP   GGR      VP+P VGF
Sbjct: 4  QKLEICIELVKIAVVFVTTVAESVEEAFRK--PPPSLPAVHGGRRNNYAAVPIPLVGF 59

[Close]
BLAST of CSPI07G07890 vs. NCBI nr
Match: gi|659109833|ref|XP_008454905.1| (PREDICTED: uncharacterized protein LOC103495210 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]
BLAST of CSPI07G07890 vs. NCBI nr
Match: gi|1009115522|ref|XP_015874275.1| (PREDICTED: uncharacterized protein LOC107411246 [Ziziphus jujuba])

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-09
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          M IQR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++    P+PF+GFYP
Sbjct: 1  MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPFIGFYP 56

[Close]
BLAST of CSPI07G07890 vs. NCBI nr
Match: gi|763765151|gb|KJB32405.1| (hypothetical protein B456_005G239600 [Gossypium raimondii])

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-06
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 57
          M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1  MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

The following BLAST results are available for this feature:
BLAST of CSPI07G07890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G07890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3A1_CUCSA1.6e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074910 PE=4 SV=1[more]
A0A0D2SML3_GOSRA3.9e-0649.12Uncharacterized protein OS=Gossypium raimondii GN=B456_005G239600 PE=4 SV=1[more]
BLAST of CSPI07G07890 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19030.17.8e-0644.83 unknown protein[more]
BLAST of CSPI07G07890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109833|ref|XP_008454905.1|2.3e-23100.00PREDICTED: uncharacterized protein LOC103495210 [Cucumis melo][more]
gi|1009115522|ref|XP_015874275.1|3.2e-0955.36PREDICTED: uncharacterized protein LOC107411246 [Ziziphus jujuba][more]
gi|763765151|gb|KJB32405.1|5.6e-0649.12hypothetical protein B456_005G239600 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G07890.1CSPI07G07890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G07890Cla015987Watermelon (97103) v1cpiwmB623
CSPI07G07890Csa7G074910Cucumber (Chinese Long) v2cpicuB354
CSPI07G07890MELO3C018426Melon (DHL92) v3.5.1cpimeB538
CSPI07G07890MELO3C018426.2Melon (DHL92) v3.6.1cpimedB523
CSPI07G07890CsaV3_7G008870Cucumber (Chinese Long) v3cpicucB415
CSPI07G07890Cla97C02G032620Watermelon (97103) v2cpiwmbB554
CSPI07G07890Cucsa.220120Cucumber (Gy14) v1cgycpiB336
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G07890Wild cucumber (PI 183967)cpicpiB091
CSPI07G07890Wild cucumber (PI 183967)cpicpiB094
CSPI07G07890Cucurbita maxima (Rimu)cmacpiB143
CSPI07G07890Cucurbita maxima (Rimu)cmacpiB534
CSPI07G07890Cucurbita maxima (Rimu)cmacpiB898
CSPI07G07890Cucurbita moschata (Rifu)cmocpiB136
CSPI07G07890Cucurbita moschata (Rifu)cmocpiB525
CSPI07G07890Cucurbita moschata (Rifu)cmocpiB877
CSPI07G07890Cucumber (Chinese Long) v2cpicuB330
CSPI07G07890Cucumber (Chinese Long) v2cpicuB334
CSPI07G07890Melon (DHL92) v3.5.1cpimeB558
CSPI07G07890Melon (DHL92) v3.5.1cpimeB576
CSPI07G07890Watermelon (Charleston Gray)cpiwcgB552
CSPI07G07890Watermelon (Charleston Gray)cpiwcgB576
CSPI07G07890Watermelon (Charleston Gray)cpiwcgB601
CSPI07G07890Watermelon (97103) v1cpiwmB584
CSPI07G07890Watermelon (97103) v1cpiwmB597
CSPI07G07890Watermelon (97103) v1cpiwmB613
CSPI07G07890Cucurbita pepo (Zucchini)cpecpiB258
CSPI07G07890Cucurbita pepo (Zucchini)cpecpiB697
CSPI07G07890Bottle gourd (USVL1VR-Ls)cpilsiB502
CSPI07G07890Bottle gourd (USVL1VR-Ls)cpilsiB507
CSPI07G07890Bottle gourd (USVL1VR-Ls)cpilsiB515
CSPI07G07890Bottle gourd (USVL1VR-Ls)cpilsiB552
CSPI07G07890Melon (DHL92) v3.6.1cpimedB542
CSPI07G07890Melon (DHL92) v3.6.1cpimedB561
CSPI07G07890Cucumber (Gy14) v2cgybcpiB088
CSPI07G07890Cucumber (Gy14) v2cgybcpiB091
CSPI07G07890Cucumber (Gy14) v2cgybcpiB332
CSPI07G07890Silver-seed gourdcarcpiB0239
CSPI07G07890Silver-seed gourdcarcpiB0849
CSPI07G07890Cucumber (Chinese Long) v3cpicucB390
CSPI07G07890Watermelon (97103) v2cpiwmbB540
CSPI07G07890Watermelon (97103) v2cpiwmbB580
CSPI07G07890Watermelon (97103) v2cpiwmbB595
CSPI07G07890Wax gourdcpiwgoB674
CSPI07G07890Wax gourdcpiwgoB698