CSPI07G07890.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G07890.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 5640757 .. 5641630 (+)
Sequence length171
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCCAGCTACTATAAATACAAACAAACAGATTAGGGCAGAGAAGAAGAAGAAGAAGACGACGACTAAGAAAGAACATTTCTCCAAAAAGAAAAAAAAAAAAAAAAGAAAAGGAAAAAAGAACGACGCGGAAAATTGAGAGAAACAGAGAAAATCGTTTCGAAATTTCTCAATCTGAAAGAAACCAGAAATCGAAAGCACACGTTCTTCAATCCGGCGGAGATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAAATTCATCCTCCGCTGCCGTCCGCGGCGGCGATGTGGCGATGTTCGTTCAAAGTTAGTGTGAATTTTGTTTTTTTTTTTGTTTAGTAATTAAATGGAGGTATTATTGTAATTGACCTCTCTATTGGAAATAATCCAATTATCTTCTTTTTTTAGTACGAAATTACTCTCTCTCTCTCTCTTATCTGGGTTAGTACGAAACTATCGAATTGTTATTTGGTTGTAATCTGTTGGTTTTATCATCATTTTGACGCCGGACCTGAAAGTCGCGCTTTAACTTCAATTATGTTCTTTCTTTCTTTTTCTTTTTTTTTTTAAAAAAAGAAAATGTATGAACTGGATGGGTATTTGTGTAAATATTGTAGAATTTAAGGGACGAGGTGTGGAATATAGTTATTATCCAATGGTTTATGTGGAATTACAGAAGTTTATTTTGTCCACTTCCCCGATTTGAATTGAGTTCTTTCTTTTCTTTTCTTTTTTT

mRNA sequence

ATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA

Coding sequence (CDS)

ATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA
Homology
[Close]
BLAST of CSPI07G07890.1 vs. TrEMBL
Match: A0A0A0K3A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074910 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]
BLAST of CSPI07G07890.1 vs. TrEMBL
Match: A0A0D2SML3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G239600 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-06
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 57
          M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1  MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

[Close]
BLAST of CSPI07G07890.1 vs. TAIR10
Match: AT3G19030.1 (AT3G19030.1 unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 7.8e-06
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 4  QRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTA-GGR------VPVPFVGF 55
          Q+LE+C+EL+++A+ FV  VAESV +   +   P +LP   GGR      VP+P VGF
Sbjct: 4  QKLEICIELVKIAVVFVTTVAESVEEAFRK--PPPSLPAVHGGRRNNYAAVPIPLVGF 59

[Close]
BLAST of CSPI07G07890.1 vs. NCBI nr
Match: gi|659109833|ref|XP_008454905.1| (PREDICTED: uncharacterized protein LOC103495210 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]
BLAST of CSPI07G07890.1 vs. NCBI nr
Match: gi|1009115522|ref|XP_015874275.1| (PREDICTED: uncharacterized protein LOC107411246 [Ziziphus jujuba])

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-09
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          M IQR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++    P+PF+GFYP
Sbjct: 1  MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPFIGFYP 56

[Close]
BLAST of CSPI07G07890.1 vs. NCBI nr
Match: gi|763765151|gb|KJB32405.1| (hypothetical protein B456_005G239600 [Gossypium raimondii])

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-06
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 57
          M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1  MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

The following BLAST results are available for this feature:
BLAST of CSPI07G07890.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G07890.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3A1_CUCSA1.6e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074910 PE=4 SV=1[more]
A0A0D2SML3_GOSRA3.9e-0649.12Uncharacterized protein OS=Gossypium raimondii GN=B456_005G239600 PE=4 SV=1[more]
BLAST of CSPI07G07890.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19030.17.8e-0644.83 unknown protein[more]
BLAST of CSPI07G07890.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109833|ref|XP_008454905.1|2.3e-23100.00PREDICTED: uncharacterized protein LOC103495210 [Cucumis melo][more]
gi|1009115522|ref|XP_015874275.1|3.2e-0955.36PREDICTED: uncharacterized protein LOC107411246 [Ziziphus jujuba][more]
gi|763765151|gb|KJB32405.1|5.6e-0649.12hypothetical protein B456_005G239600 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G07890CSPI07G07890gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G07890.1CSPI07G07890.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G07890.1.utr5p1CSPI07G07890.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G07890.1.cds1CSPI07G07890.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G07890.1.utr3p1CSPI07G07890.1.utr3p1three_prime_UTR