Cucsa.220120 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.220120
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01658 : 1661834 .. 1662225 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTACTATAAATACAAACAGATTAGGGCAGAGAGGAAGAAGAAGAAGAAGACGACGACTAAGAAAGAACATTTCTCCAAAAAGAAAAAaGAAAAaTAAAAAAGAAAGGAAAAGGAAAAAaGAACGACGCGGAAAATTGAGAGAAACAGAGAAAATCGTTTCGAAATTTCTCAATCTGAAAGAAACCAGAAATCGAAAGCACACGTTCTTCAATCCGGCGGAGATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATACACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTtACCCCTAA

mRNA sequence

CTACTATAAATACAAACAGATTAGGGCAGAGAGGAAGAAGAAGAAGAAGACGACGACTAAGAAAGAACATTTCTCCAaaaagaaaaaagaaaaataaaaaagaaaggaaaaggaaaaaaGAACGACGCGGAAAATTGAGAGAAACAGAGAAAATCGTTTCGAAATTTCTCAATCTGAAAGAAACCAGAAATCGAAAGCACACGTTCTTCAATCCGGCGGAGATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATACACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA

Coding sequence (CDS)

CTACTATAAATACAAACAGATTAGGGCAGAGAGGAAGAAGAAGAAGAAGACGACGACTAAGAAAGAACATTTCTCCAAAAAGAAAAAaGAAAAaTAAAAAAGAAAGGAAAAGGAAAAAaGAACGACGCGGAAAATTGAGAGAAACAGAGAAAATCGTTTCGAAATTTCTCAATCTGAAAGAAACCAGAAATCGAAAGCACACGTTCTTCAATCCGGCGGAGATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATACACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTtACCCCTAA

Protein sequence

TINTNRLGQRGRRRRRRRLRKNISPKRKKKNKKERKRKKERRGKLRETEKIVSKFLNLKETRNRKHTFFNPAEMGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP*
Homology
[Close]
BLAST of Cucsa.220120 vs. TrEMBL
Match: A0A0A0K3A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074910 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 74  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 130
           MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1   MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]
BLAST of Cucsa.220120 vs. TrEMBL
Match: A0A0D2SML3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G239600 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-06
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 74  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 130
           M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1   MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

[Close]
BLAST of Cucsa.220120 vs. NCBI nr
Match: gi|659109833|ref|XP_008454905.1| (PREDICTED: uncharacterized protein LOC103495210 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 74  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 130
           MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1   MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]
BLAST of Cucsa.220120 vs. NCBI nr
Match: gi|1009115522|ref|XP_015874275.1| (PREDICTED: uncharacterized protein LOC107411246 [Ziziphus jujuba])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 74  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 130
           M IQR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++    P+PF+GFYP
Sbjct: 1   MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPFIGFYP 56

[Close]
BLAST of Cucsa.220120 vs. NCBI nr
Match: gi|763765151|gb|KJB32405.1| (hypothetical protein B456_005G239600 [Gossypium raimondii])

HSP 1 Score: 58.5 bits (140), Expect = 9.8e-06
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 74  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 130
           M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1   MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

The following BLAST results are available for this feature:
BLAST of Cucsa.220120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3A1_CUCSA2.8e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074910 PE=4 SV=1[more]
A0A0D2SML3_GOSRA6.8e-0649.12Uncharacterized protein OS=Gossypium raimondii GN=B456_005G239600 PE=4 SV=1[more]
BLAST of Cucsa.220120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109833|ref|XP_008454905.1|4.0e-23100.00PREDICTED: uncharacterized protein LOC103495210 [Cucumis melo][more]
gi|1009115522|ref|XP_015874275.1|5.5e-0955.36PREDICTED: uncharacterized protein LOC107411246 [Ziziphus jujuba][more]
gi|763765151|gb|KJB32405.1|9.8e-0649.12hypothetical protein B456_005G239600 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.220120.1Cucsa.220120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.220120Cla015987Watermelon (97103) v1cgywmB427
Cucsa.220120Csa7G074910Cucumber (Chinese Long) v2cgycuB322
Cucsa.220120MELO3C018426Melon (DHL92) v3.5.1cgymeB379
Cucsa.220120CSPI07G07890Wild cucumber (PI 183967)cgycpiB336
Cucsa.220120MELO3C018426.2Melon (DHL92) v3.6.1cgymedB377
Cucsa.220120CsaV3_7G008870Cucumber (Chinese Long) v3cgycucB342
Cucsa.220120Cla97C02G032620Watermelon (97103) v2cgywmbB395
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.220120Cucumber (Chinese Long) v3cgycucB337
Cucsa.220120Watermelon (97103) v2cgywmbB392
Cucsa.220120Watermelon (97103) v2cgywmbB400
Cucsa.220120Wax gourdcgywgoB446
Cucsa.220120Cucurbita maxima (Rimu)cgycmaB0620
Cucsa.220120Cucurbita maxima (Rimu)cgycmaB0624
Cucsa.220120Cucurbita maxima (Rimu)cgycmaB0630
Cucsa.220120Cucurbita moschata (Rifu)cgycmoB0624
Cucsa.220120Cucurbita moschata (Rifu)cgycmoB0626
Cucsa.220120Cucurbita moschata (Rifu)cgycmoB0627
Cucsa.220120Cucurbita moschata (Rifu)cgycmoB0633
Cucsa.220120Wild cucumber (PI 183967)cgycpiB332
Cucsa.220120Cucumber (Chinese Long) v2cgycuB319
Cucsa.220120Melon (DHL92) v3.5.1cgymeB384
Cucsa.220120Watermelon (Charleston Gray)cgywcgB394
Cucsa.220120Watermelon (Charleston Gray)cgywcgB396
Cucsa.220120Watermelon (97103) v1cgywmB418
Cucsa.220120Watermelon (97103) v1cgywmB425
Cucsa.220120Cucurbita pepo (Zucchini)cgycpeB0594
Cucsa.220120Cucurbita pepo (Zucchini)cgycpeB0602
Cucsa.220120Bottle gourd (USVL1VR-Ls)cgylsiB360
Cucsa.220120Bottle gourd (USVL1VR-Ls)cgylsiB361
Cucsa.220120Bottle gourd (USVL1VR-Ls)cgylsiB362
Cucsa.220120Melon (DHL92) v3.6.1cgymedB382
Cucsa.220120Silver-seed gourdcarcgyB0251
Cucsa.220120Silver-seed gourdcarcgyB0920