MELO3C018426.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018426.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	AT3g19030/K13E13_15
Location	chr01 : 165812 .. 166589 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAGAGAAGAAGAAGAAGACGACGACTAACAACATTTCTCGAAAAAGAAAAAGAAAAAAAAGAACGACGCGGAAACTTGAGAGAAGCAGAGAAAATCGTTTCGAAATTTCTCGATCTCAAAGAAACTCGAATTCGAAAGCACCGATTTTTCCCGTTCTTCAATCCGGCGGAGATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTCGTGGTCGTTGCCGAATCCGTCGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGGGTTCCGGTTCCTTTTGTCGGCTTTTACCCCTAAATTCATCCTCCGCTGCCGTCCGCGGCGGCGATGTGGCGATGTTCGTTCGAAGTTAGTGTGAATTTTGTTTTTTTTTTTAGTTTTTAATATTGTAATTGATCTCTTGGAAATAATCCAATTATCTTCTTTCTTTTAGTACGAAATTATTCTCTCTCTCTCTCTCTCTTTTGGATTAGTACGAAATTATGAAATTGTTATTTGGTTGTAATTTGTTGGTTTTATCGTCATTTTGACGCCGGACCTTCTGACCAACAATAATTCAGGAACTTGGAGTTGCACTTTAACTTAATTTATGTTCTTTCTTTTCTTTTATTTATTTATTCCTTTTTAAAAAGAAAAAGAAAAAAAAAGAAAATGTATGGACTGAATGTGTAAATATTGTAGAATTTTAGGGACGAGTTGTGAAATATAATCATTATTCAATGGCTCATGTG

mRNA sequence

GGCAGAGAAGAAGAAGAAGACGACGACTAACAACATTTCTCGAAAAAGAAAAAGAAAAAAAAGAACGACGCGGAAACTTGAGAGAAGCAGAGAAAATCGTTTCGAAATTTCTCGATCTCAAAGAAACTCGAATTCGAAAGCACCGATTTTTCCCGTTCTTCAATCCGGCGGAGATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTCGTGGTCGTTGCCGAATCCGTCGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGGGTTCCGGTTCCTTTTGTCGGCTTTTACCCCTAAATTCATCCTCCGCTGCCGTCCGCGGCGGCGATGTGGCGATGTTCGTTCGAAGTTAGTGTGAATTTTGTTTTTTTTTTTAGTTTTTAATATTGTAATTGATCTCTTGGAAATAATCCAATTATCTTCTTTCTTTTAGTACGAAATTATTCTCTCTCTCTCTCTCTCTTTTGGATTAGTACGAAATTATGAAATTGTTATTTGGTTGTAATTTGTTGGTTTTATCGTCATTTTGACGCCGGACCTTCTGACCAACAATAATTCAGGAACTTGGAGTTGCACTTTAACTTAATTTATGTTCTTTCTTTTCTTTTATTTATTTATTCCTTTTTAAAAAGAAAAAGAAAAAAAAAGAAAATGTATGGACTGAATGTGTAAATATTGTAGAATTTTAGGGACGAGTTGTGAAATATAATCATTATTCAATGGCTCATGTG

Coding sequence (CDS)

CAGAGAAGAAGAAGAAGACGACGACTAACAACATTTCTCGAAAAAGAAAAAGAAAAAAAAGAACGACGCGGAAACTTGAGAGAAGCAGAGAAAATCGTTTCGAAATTTCTCGATCTCAAAGAAACTCGAATTCGAAAGCACCGATTTTTCCCGTTCTTCAATCCGGCGGAGATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTCGTGGTCGTTGCCGAATCCGTCGGCGACGTTATCCACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGGGTTCCGGTTCCTTTTGTCGGCTTTTACCCCTAA

Protein sequence

QRRRRRRRLTTFLEKEKEKKERRGNLREAEKIVSKFLDLKETRIRKHRFFPFFNPAEMGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP

Homology

[Close]

BLAST of MELO3C018426.2 vs. NCBI nr
Match: KGN43958.1 (hypothetical protein Csa_7G074910 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 6.7e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 114
           MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1   MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]

BLAST of MELO3C018426.2 vs. NCBI nr
Match: XP_015874275.1 (uncharacterized protein LOC107411246 [Ziziphus jujuba])

HSP 1 Score: 69.3 bits (168), Expect = 9.4e-09
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 114
           M IQR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++    P+PF+GFYP
Sbjct: 1   MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPFIGFYP 56

[Close]

BLAST of MELO3C018426.2 vs. NCBI nr
Match: OAY29431.1 (hypothetical protein MANES_15G144200 [Manihot esculenta])

HSP 1 Score: 62.8 bits (151), Expect = 8.8e-07
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 114
           M  QRLE+C++L+R+A+ FV +VAE++G VI ++   + +PT    VPVPFVGF P
Sbjct: 1   MMFQRLEMCIQLIRLALEFVFIVAEAIGIVIEQDSSHRYIPTQTFAVPVPFVGFLP 56

[Close]

BLAST of MELO3C018426.2 vs. NCBI nr
Match: OMP01570.1 (hypothetical protein COLO4_11728 [Corchorus olitorius])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHR-ECQPQALPTAGGR----VPVPFVGFY 114
           M +QRLE+C+ELL++AI+FV+VVAE+VG VI + E  P  +  A GR      VPFVGF 
Sbjct: 1   MVLQRLEICVELLKLAIDFVIVVAEAVGVVIQQSERTPPMIAAASGRSISSTSVPFVGFL 60

[Close]

BLAST of MELO3C018426.2 vs. NCBI nr
Match: KJB32405.1 (hypothetical protein B456_005G239600 [Gossypium raimondii])

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 114
           M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1   MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

[Close]

BLAST of MELO3C018426.2 vs. TAIR10
Match: AT3G19030.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 61  QRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTA-GGR------VPVPFVGF 112
           Q+LE+C+EL+++A+ FV  VAESV +   +   P +LP   GGR      VP+P VGF
Sbjct: 4   QKLEICIELVKIAVVFVTTVAESVEEAFRK--PPPSLPAVHGGRRNNYAAVPIPLVGF 59

[Close]

BLAST of MELO3C018426.2 vs. TrEMBL
Match: tr|A0A0A0K3A1|A0A0A0K3A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.4e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 114
           MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1   MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]

BLAST of MELO3C018426.2 vs. TrEMBL
Match: tr|A0A2C9UG64|A0A2C9UG64_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G144200 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-07
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 114
           M  QRLE+C++L+R+A+ FV +VAE++G VI ++   + +PT    VPVPFVGF P
Sbjct: 1   MMFQRLEMCIQLIRLALEFVFIVAEAIGIVIEQDSSHRYIPTQTFAVPVPFVGFLP 56

[Close]

BLAST of MELO3C018426.2 vs. TrEMBL
Match: tr|A0A1R3K399|A0A1R3K399_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11728 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.4e-06
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHR-ECQPQALPTAGGR----VPVPFVGFY 114
           M +QRLE+C+ELL++AI+FV+VVAE+VG VI + E  P  +  A GR      VPFVGF 
Sbjct: 1   MVLQRLEICVELLKLAIDFVIVVAEAVGVVIQQSERTPPMIAAASGRSISSTSVPFVGFL 60

[Close]

BLAST of MELO3C018426.2 vs. TrEMBL
Match: tr|A0A1S8ACW1|A0A1S8ACW1_CITLI (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRV-PVPFVGFYP 114
           M IQRLE+C+EL+++AI FV+VVAE+VG VIHR   P+ + T    + P P VG  P
Sbjct: 2   MMIQRLEMCIELVKLAIEFVLVVAEAVGAVIHRNESPENISTTTFVIAPAPLVGIIP 58

[Close]

BLAST of MELO3C018426.2 vs. TrEMBL
Match: tr|A0A0D2SML3|A0A0D2SML3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G239600 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 58  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 114
           M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1   MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

The following BLAST results are available for this feature:

BLAST of MELO3C018426.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43958.1	6.7e-23	100.00	hypothetical protein Csa_7G074910 [Cucumis sativus]	[more]
XP_015874275.1	9.4e-09	55.36	uncharacterized protein LOC107411246 [Ziziphus jujuba]	[more]
OAY29431.1	8.8e-07	50.00	hypothetical protein MANES_15G144200 [Manihot esculenta]	[more]
OMP01570.1	1.3e-05	54.10	hypothetical protein COLO4_11728 [Corchorus olitorius]	[more]
KJB32405.1	1.7e-05	49.12	hypothetical protein B456_005G239600 [Gossypium raimondii]	[more]

BLAST of MELO3C018426.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19030.1	1.5e-05	44.83	unknown protein	[more]

BLAST of MELO3C018426.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C018426.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3A1\|A0A0A0K3A1_CUCSA	4.4e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1	[more]
tr\|A0A2C9UG64\|A0A2C9UG64_MANES	5.8e-07	50.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G144200 PE=4 SV=...	[more]
tr\|A0A1R3K399\|A0A1R3K399_9ROSI	8.4e-06	54.10	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11728 PE=4 SV=1	[more]
tr\|A0A1S8ACW1\|A0A1S8ACW1_CITLI	1.1e-05	52.63	Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1	[more]
tr\|A0A0D2SML3\|A0A0D2SML3_GOSRA	1.1e-05	49.12	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G239600 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018426.2.1	MELO3C018426.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37705	FAMILY NOT NAMED	coord: 58..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018426.2	Csa7G074910	Cucumber (Chinese Long) v2	cumedB509
MELO3C018426.2	CSPI07G07890	Wild cucumber (PI 183967)	cpimedB523
MELO3C018426.2	Cucsa.220120	Cucumber (Gy14) v1	cgymedB377
MELO3C018426.2	Cla015987	Watermelon (97103) v1	medwmB232
MELO3C018426.2	Cla97C02G032620	Watermelon (97103) v2	medwmbB166
MELO3C018426.2	CsaV3_7G008870	Cucumber (Chinese Long) v3	cucmedB536

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018426.2	Watermelon (97103) v2	medwmbB190
MELO3C018426.2	Wax gourd	medwgoB222
MELO3C018426.2	Cucumber (Gy14) v2	cgybmedB465
MELO3C018426.2	Cucurbita maxima (Rimu)	cmamedB106
MELO3C018426.2	Cucurbita maxima (Rimu)	cmamedB535
MELO3C018426.2	Cucurbita moschata (Rifu)	cmomedB091
MELO3C018426.2	Cucurbita moschata (Rifu)	cmomedB452
MELO3C018426.2	Cucurbita moschata (Rifu)	cmomedB523
MELO3C018426.2	Cucurbita pepo (Zucchini)	cpemedB263
MELO3C018426.2	Cucurbita pepo (Zucchini)	cpemedB715
MELO3C018426.2	Melon (DHL92) v3.6.1	medmedB080
MELO3C018426.2	Bottle gourd (USVL1VR-Ls)	lsimedB103
MELO3C018426.2	Watermelon (Charleston Gray)	medwcgB181
MELO3C018426.2	Watermelon (Charleston Gray)	medwcgB192
MELO3C018426.2	Silver-seed gourd	carmedB0218
MELO3C018426.2	Cucumber (Chinese Long) v3	cucmedB105