CSPI06G19030 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G19030
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Damaged dna-binding 2, putative isoform 2
Location	Chr6 : 17227358 .. 17228869 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAAGTGATGAATGGAAGCCCGGCAGATGAGGATAAGGCCTTGGGCTTTCCTTTTCGGAGTTCTTTATCCTTTTCATTAACTCTCTCATCCTAGATGATATTACTCTTCTCTTCTCCTTCATTAATTGTCTACAAATCCATAATTTTCTATATTTAAATTCTTGTCTCTTCTTCTCTACACAATCTCTCCACTCCCATCGATATATCAATGCCAAACTATATTTCTTAATCTCATCTTCATTTTAAAACTATAATCTTCTTCCTTCTCTATCTCATTTGAATCACTCAATTATGTCAATTGCTCTGGAAACCAATACCGTTTTTTCTCAACCTGGATTGCCCTCTTACTGTTCTGTCTTGAATACCACCGGAATTATTCCGGTAGTTCGGCGAGAGGCGGCTCTTGCTGATGCGGTGGCGCCAGCGGATGTGGATAGATGTAGTTCCTCTTCATCGTCCTCGATCGGAGAAAATAGTGGTTTCTCTGTACGATCATCGGATAATGACGATGGAGAGGATAATGAGGCGGAAAGTTCGTATAAAGGACCTCTAGGAATGGAGTCGTTGGAAGAAGTTCTGCCTATCAGGTTAGCGATTTTTTTTTTTTTTGGGTTCTTCGTAATCTTCTTCTTTTCTATGGTTTCAAGATTTAGAGCAACTTGATCTATCGCTTGTTGATTTCGAGATTCAGTTGAGTTTTGACAAATTATATCATCTTGTGAATGTTATGCAGGAGAGGAATTTCAAATTTCTATAACGGGAAATCGAAATCCTTCACAAGTCTAGTAGACGCTTCCTCCTCCTCCTCCATTAAAGACATAGCGAAGCCTGAAAACGCTTTCTCTCGAAAACGGAGGAATCTTCTTGCATCTAATCTAATCGCCGGCGGCATATCAAAGCGTCCGATTATTAGTTCAAGTCGAAGCTCGTTAGCGTTGGCCGTCGTCCTGAGCAGTTCTGAAATCCACAAAAATAACGATCTGAATTCAATATTACCTCCGCCGACGCTGATTCGTCCTCCATTGTACCCCAATGGGCGAGGATCTCGTATCAATTCAGGTTCTGCAGTTCCATCTCTCTGTAAATTCCCAACTTGGCGATCATACTCCATGGCCAATATACAGTAGCTAGCGTAGGGAAGGGTTTTCCCATGGCGTCCATGGAAGCTAAATCACCATGAAAGACTAACTTAACCTCTTGTGAAACCGAGTTTCATCGAATTGGTTTCTGACGAATAACTCATTTTCTTTCAAATTTCCCACGATCTTAGGAACTCTGTTTTGATTTCCTTTTTGTATGAATGTATGTAAAGTGAAAAGAGAAAAAGCATAGCAGTTCATATTTTGAATCGATTTCTGTTTGTTCATACAATTTGAATCAGCAAATGGAGAGAGCATGAGAGTTTCTTTTTTTAAATAAAGTAATGGGAAAAATACAGATAAAAGTTTGGGGCAAACTGAAAAGGAATTGGTAATGAATGTGTCAATGTCATATAAAGCTGATGGACTAA

mRNA sequence

ATGTCAATTGCTCTGGAAACCAATACCGTTTTTTCTCAACCTGGATTGCCCTCTTACTGTTCTGTCTTGAATACCACCGGAATTATTCCGGTAGTTCGGCGAGAGGCGGCTCTTGCTGATGCGGTGGCGCCAGCGGATGTGGATAGATGTAGTTCCTCTTCATCGTCCTCGATCGGAGAAAATAGTGGTTTCTCTGTACGATCATCGGATAATGACGATGGAGAGGATAATGAGGCGGAAAGTTCGTATAAAGGACCTCTAGGAATGGAGTCGTTGGAAGAAGTTCTGCCTATCAGGAGAGGAATTTCAAATTTCTATAACGGGAAATCGAAATCCTTCACAAGTCTAGTAGACGCTTCCTCCTCCTCCTCCATTAAAGACATAGCGAAGCCTGAAAACGCTTTCTCTCGAAAACGGAGGAATCTTCTTGCATCTAATCTAATCGCCGGCGGCATATCAAAGCGTCCGATTATTAGTTCAAGTCGAAGCTCGTTAGCGTTGGCCGTCGTCCTGAGCAGTTCTGAAATCCACAAAAATAACGATCTGAATTCAATATTACCTCCGCCGACGCTGATTCGTCCTCCATTGTACCCCAATGGGCGAGGATCTCGTATCAATTCAGGTTCTGCAGTTCCATCTCTCTGTAAATTCCCAACTTGGCGATCATACTCCATGGCCAATATACAGTAG

Coding sequence (CDS)

ATGTCAATTGCTCTGGAAACCAATACCGTTTTTTCTCAACCTGGATTGCCCTCTTACTGTTCTGTCTTGAATACCACCGGAATTATTCCGGTAGTTCGGCGAGAGGCGGCTCTTGCTGATGCGGTGGCGCCAGCGGATGTGGATAGATGTAGTTCCTCTTCATCGTCCTCGATCGGAGAAAATAGTGGTTTCTCTGTACGATCATCGGATAATGACGATGGAGAGGATAATGAGGCGGAAAGTTCGTATAAAGGACCTCTAGGAATGGAGTCGTTGGAAGAAGTTCTGCCTATCAGGAGAGGAATTTCAAATTTCTATAACGGGAAATCGAAATCCTTCACAAGTCTAGTAGACGCTTCCTCCTCCTCCTCCATTAAAGACATAGCGAAGCCTGAAAACGCTTTCTCTCGAAAACGGAGGAATCTTCTTGCATCTAATCTAATCGCCGGCGGCATATCAAAGCGTCCGATTATTAGTTCAAGTCGAAGCTCGTTAGCGTTGGCCGTCGTCCTGAGCAGTTCTGAAATCCACAAAAATAACGATCTGAATTCAATATTACCTCCGCCGACGCTGATTCGTCCTCCATTGTACCCCAATGGGCGAGGATCTCGTATCAATTCAGGTTCTGCAGTTCCATCTCTCTGTAAATTCCCAACTTGGCGATCATACTCCATGGCCAATATACAGTAG

Homology

[Close]

BLAST of CSPI06G19030 vs. TrEMBL
Match: A0A0A0KFI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361410 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 1.5e-117
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1


Query: 1   MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSSSSIGE 60
           MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRC+SSSSSSIGE
Sbjct: 1   MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCTSSSSSSIGE 60

Query: 61  NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS 120
           NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS
Sbjct: 61  NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS 120

Query: 121 SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN 180
           SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN
Sbjct: 121 SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN 180

Query: 181 DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
           DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ
Sbjct: 181 DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 229

[Close]

BLAST of CSPI06G19030 vs. TrEMBL
Match: A0A0A0L451_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648530 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.3e-43
Identity = 116/196 (59.18%), Postives = 141/196 (71.94%), Query Frame = 1


Query: 51  SSSSSSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGM-ESLEEVLPIRRGISNFYNGK 110
           S+SSSSSIG NS    +S D D+GE++E +SSYKGPL M +SLEEVLP+R+GIS FY+GK
Sbjct: 59  STSSSSSIGRNSD---QSDDEDNGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGK 118

Query: 111 SKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLI------------AGGISKRPI 170
           SKSFTSL DASS +S+K+IAKPENA+S+KRRNL+A NL+             GGISKRP 
Sbjct: 119 SKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRP- 178

Query: 171 ISSSRSSLALAVVLSSSEIHKNNDLN----SILPPPTLIRPPLYPNGRGSRINSGSAVPS 230
           ISSS+SSLALAV +SSSE + + D N    S  PPP   RPPL+P  R S  N  S VP 
Sbjct: 179 ISSSKSSLALAVAMSSSESNSSEDSNCSSYSSSPPP---RPPLHPQSRPSNNNFPSMVPP 238

[Close]

BLAST of CSPI06G19030 vs. TrEMBL
Match: W9RF79_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018609 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.7e-40
Identity = 120/216 (55.56%), Postives = 147/216 (68.06%), Query Frame = 1


Query: 32  VRREAALADAVAPADVDRCSSSSSSSIGENSGFSVRSS-DNDDGEDNEAESSYKGPLGM- 91
           V+   A  +  + A     +S+SSSSIG+NS  SVRSS D DD E+NEA+SSYKGPL M 
Sbjct: 41  VKESNACNNETSSASASASASASSSSIGKNSDLSVRSSSDGDDCEENEAQSSYKGPLEMM 100

Query: 92  ESLEEVLPIRRGISNFYNGKSKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLI- 151
           E+LEEVLPIRRGIS FYNGKSKSFTSL DA+S+SSIKDI KPENA++RKRRNL+A N + 
Sbjct: 101 EALEEVLPIRRGISKFYNGKSKSFTSLGDAASTSSIKDITKPENAYTRKRRNLMAFNHVW 160

Query: 152 ------------AGGISKRPIISSSRSSLALAVVLSSSEIHK--NNDLNSILPPPTLIRP 211
                        GGISKRP ISSSRSSLALA+ +SSSE     ++D +S  PPP    P
Sbjct: 161 DNKNRSFPLRSNGGGISKRP-ISSSRSSLALAMAMSSSESSSSTSDDSSSRSPPPL---P 220

Query: 212 PLYPNGRGS-RINSGSAVPSLCKFPTWRSYSMANIQ 230
           PL+P  R S  + S ++ P    F   RS S+A++Q
Sbjct: 221 PLHPQARASFHVKSSTSPPR--HFCASRSLSLADLQ 250

[Close]

BLAST of CSPI06G19030 vs. TrEMBL
Match: A5B5R8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g02000 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.5e-37
Identity = 112/235 (47.66%), Postives = 148/235 (62.98%), Query Frame = 1


Query: 18  SYCSVLNTTGIIPVVRREAALADAVAPAD-----VDRCSSSSSSSIGENSGFSVRSSDND 77
           S  S+  +  ++   RR  A  +  A A+     +D CSSSSS  IG+NS  S  SSD +
Sbjct: 22  SCISIFESPELLTGDRRFPAGGEMAAKAEEREEELDSCSSSSS--IGKNSDVSGMSSDQE 81

Query: 78  DGEDNEAESSYKGPL-GMESLEEVLPIRRGISNFYNGKSKSFTSLVDASSSSSIKDIAKP 137
           D  + E +SSYK PL  M +LEEVLP+RRGIS FYNGKSKSFTSL DAS+S+S KD+AKP
Sbjct: 82  DSGETEVQSSYKRPLDSMNALEEVLPLRRGISRFYNGKSKSFTSLADASTSASCKDLAKP 141

Query: 138 ENAFSRKRRNLLASNLI------------AGGISKRPIISSSRSSLALAVVLSSSEIHK- 197
           ENA++R+RRNLLA N +             GGISK+ + ++SRS+LALAV +SSS+ +  
Sbjct: 142 ENAYNRRRRNLLAYNHVLDKNRNFPLRSNGGGISKK-LAATSRSTLALAVAMSSSDSNNS 201

Query: 198 ----NNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
               N+ LN I   P+L+ PPL+P  R    N  S+ P       WRSYS+A++Q
Sbjct: 202 SEDLNSSLNCISRSPSLLLPPLHPQARLYHNNVSSSPPQR-NLSAWRSYSLADLQ 252

[Close]

BLAST of CSPI06G19030 vs. TrEMBL
Match: A9PBN9_POPTR (MTD1 family protein OS=Populus trichocarpa GN=POPTR_0006s23640g PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 109/211 (51.66%), Postives = 138/211 (65.40%), Query Frame = 1


Query: 32  VRREAALADAVAPADVDRCSSSSSSSIGENSGFSVRSSDNDDGEDNEAESSYKGPL-GME 91
           V R   +A+  +P+     ++SSSSSIG+NS  +      D  E+NE +S+YKG L  ME
Sbjct: 23  VERRKEMAEECSPSS---STTSSSSSIGKNSDLT--DGGEDGLEENEVQSAYKGTLDSME 82

Query: 92  SLEEVLPIRRGISNFYNGKSKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLI-- 151
           +LEEVLPIRRGISNFYNGKSKSFTSL DASSS SIKDIAKPENA++RKRRNLLA + +  
Sbjct: 83  ALEEVLPIRRGISNFYNGKSKSFTSLSDASSSPSIKDIAKPENAYTRKRRNLLAFSHVWE 142

Query: 152 -------AGGISKRPIISSSRSSLALAVVLSSSE---IHKNNDLNSILPPPTLIRPPLYP 211
                    GI+KRP IS+S+S+LALAV +SSSE       +  ++   PP L  PPL+P
Sbjct: 143 KTRSFPYRSGIAKRP-ISNSKSTLALAVAMSSSESISSASEDSTSTSKSPPNL--PPLHP 202

Query: 212 NGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
             R S  N  S       F  WRS+S+A++Q
Sbjct: 203 RSRASHNNLTSLPSPRQNFSPWRSFSLADLQ 225

[Close]

BLAST of CSPI06G19030 vs. TAIR10
Match: AT5G21940.1 (AT5G21940.1 unknown protein)

HSP 1 Score: 128.6 bits (322), Expect = 4.8e-30
Identity = 96/212 (45.28%), Postives = 129/212 (60.85%), Query Frame = 1


Query: 51  SSSSSSSIGENSGFSVRSSDN--DDGEDNEAESSYKGPLGM-ESLEEVLPIRRGISNFYN 110
           SSS+SSSIG NS    +SS++  DD  +NE ES YKGPL M ESLE+VLP+R+GIS +Y+
Sbjct: 37  SSSASSSIGRNSDDGEKSSEDGGDDAGENEVESPYKGPLEMMESLEQVLPVRKGISKYYS 96

Query: 111 GKSKSFTSLV-----DASSSSSIKDIAKPENAFSRKRRNLLASNL-------IAGGISKR 170
           GKSKSFT+L        +SSSS+KD+AKPEN +SR+RRNLL   +         GGISK+
Sbjct: 97  GKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRRNLLCHQIWENNKTTPRGGISKK 156

Query: 171 PIISSSRSSLALAVVLSSSEI------------HKNNDLNSILPPPTLIR--------PP 228
            ++SSSRS+L LA+ +++  +              ++   S  PP  L          PP
Sbjct: 157 HVMSSSRSALTLAMAVAAGVMTGEGSSSGGDSSPGSSPTTSGSPPRQLHHHQHQMKKLPP 216

[Close]

BLAST of CSPI06G19030 vs. TAIR10
Match: AT3G43850.1 (AT3G43850.1 unknown protein)

HSP 1 Score: 104.4 bits (259), Expect = 9.7e-23
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 1


Query: 51  SSSSSSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGM-ESLEEVLPIRRGISNFYNGK 110
           SS+SS SIGENS       D+D+G +NE ESSY GPL M ESLEE LPI+R IS FY GK
Sbjct: 23  SSTSSDSIGENS-------DDDEGGENEIESSYNGPLDMMESLEEALPIKRAISKFYKGK 82

Query: 111 SKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLIA-GGISKRPIIS 160
           SKSF SL + +SS  +KD+ KPEN +SR+RRNLL+  + + GGISK+P  S
Sbjct: 83  SKSFMSLSE-TSSLPVKDLTKPENLYSRRRRNLLSHRICSRGGISKKPFKS 125

[Close]

BLAST of CSPI06G19030 vs. TAIR10
Match: AT2G24550.1 (AT2G24550.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-11
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 51  SSSSSSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGM--ESLEEVLPIRRGISNFYNG 110
           SS SSSSIGE+S       + ++ E+++A S  +G L     SLE+ LPI+RG+SN Y G
Sbjct: 64  SSDSSSSIGESS------ENEEEEEEDDAVSCQRGTLDSFSSSLEDSLPIKRGLSNHYVG 123

Query: 111 KSKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGIS 154
           KSKSF +L++A+S +  KD+ K EN F+++RR ++A+ L   G S
Sbjct: 124 KSKSFGNLMEAASKA--KDLEKVENPFNKRRRLVIANKLRRRGRS 160

[Close]

BLAST of CSPI06G19030 vs. TAIR10
Match: AT4G31510.1 (AT4G31510.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 8.0e-09
Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 1


Query: 33  RREAALADAVAPADVD------RCSSS----SSSSIGENSGFSVRSSDNDDGEDNEAESS 92
           R      D   PA +       RC  S    SSSS+GE       +S+N++ ED+   SS
Sbjct: 12  RSSVTTHDQAVPASLSSRIGLRRCGRSPPPESSSSVGE-------TSENEEDEDDAVSSS 71

Query: 93  YKGPLGM--ESLEEVLPIRRGISNFYNGKSKSFTSLVDASSSSSIKDIAKPENAFSRKRR 152
               L     SLE+ LPI+RG+SN Y GKSKSF +L++AS+++   D+ K E+  +++RR
Sbjct: 72  QGRWLNSFSSSLEDSLPIKRGLSNHYIGKSKSFGNLMEASNTN---DLVKVESPLNKRRR 131

Query: 153 NLLASNL-IAGGISKRPIIS--SSRSSLALAVVLSSSEIHKNND 182
            L+A+ L     +S   I +  +  S   LA+  S +E HK ND
Sbjct: 132 LLIANKLRRRSSLSSFSIYTKINPNSMPLLALQESDNEDHKLND 165

[Close]

BLAST of CSPI06G19030 vs. TAIR10
Match: AT5G24890.1 (AT5G24890.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-08
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 52  SSSSSSIGE--NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGK 111
           SS SSSIG   +S      S+N++ + +  E   +G   M SLE+ LP +RG+SN Y GK
Sbjct: 59  SSDSSSIGTPGDSEEDEEESENENDDVSSKELGLRGLASMSSLEDSLPSKRGLSNHYKGK 118

Query: 112 SKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNL 148
           SKSF +L       S+K++AK EN  +++RR  + + L
Sbjct: 119 SKSFGNL---GEIGSVKEVAKQENPLNKRRRLQICNKL 153

[Close]

BLAST of CSPI06G19030 vs. NCBI nr
Match: gi|449452937|ref|XP_004144215.1| (PREDICTED: uncharacterized protein LOC101211014 [Cucumis sativus])

HSP 1 Score: 430.3 bits (1105), Expect = 2.2e-117
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1


Query: 1   MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSSSSIGE 60
           MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRC+SSSSSSIGE
Sbjct: 1   MSIALETNTVFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCTSSSSSSIGE 60

Query: 61  NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS 120
           NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS
Sbjct: 61  NSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTSLVDAS 120

Query: 121 SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN 180
           SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN
Sbjct: 121 SSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSEIHKNN 180

Query: 181 DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
           DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ
Sbjct: 181 DLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 229

[Close]

BLAST of CSPI06G19030 vs. NCBI nr
Match: gi|659089501|ref|XP_008445543.1| (PREDICTED: uncharacterized protein LOC103488525 [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 1.1e-108
Identity = 216/234 (92.31%), Postives = 222/234 (94.87%), Query Frame = 1


Query: 1   MSIALETNT-----VFSQPGLPSYCSVLNTTGIIPVVRREAALADAVAPADVDRCSSSSS 60
           MSIALE+NT     VFSQ GLP YCSVLNTTGIIPVVRREAA+ADAVAP DVDRCSSSSS
Sbjct: 36  MSIALESNTRIPPSVFSQAGLPPYCSVLNTTGIIPVVRREAAVADAVAPEDVDRCSSSSS 95

Query: 61  SSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 120
           SSIGENSGFSVRSSDNDDGEDNEAESSY+GPLGMESLEEVLPIRRGISNFYNGKSKSFTS
Sbjct: 96  SSIGENSGFSVRSSDNDDGEDNEAESSYRGPLGMESLEEVLPIRRGISNFYNGKSKSFTS 155

Query: 121 LVDASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 180
           L DASSSSSIK+IAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE
Sbjct: 156 LADASSSSSIKEIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSSSE 215

Query: 181 IHKNNDLNSILPPPTLIRPPLYPNGRGSRINSGSAVPSLCKFPTWRSYSMANIQ 230
            HKNNDLNSI+PPPT IRPPL+PNGR SRINSGSAVPSLCKFPTWRSYSMANIQ
Sbjct: 216 SHKNNDLNSIIPPPTPIRPPLHPNGRASRINSGSAVPSLCKFPTWRSYSMANIQ 269

[Close]

BLAST of CSPI06G19030 vs. NCBI nr
Match: gi|449447177|ref|XP_004141345.1| (PREDICTED: vitellogenin-2-like [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 4.7e-43
Identity = 116/196 (59.18%), Postives = 141/196 (71.94%), Query Frame = 1


Query: 51  SSSSSSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGM-ESLEEVLPIRRGISNFYNGK 110
           S+SSSSSIG NS    +S D D+GE++E +SSYKGPL M +SLEEVLP+R+GIS FY+GK
Sbjct: 59  STSSSSSIGRNSD---QSDDEDNGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGK 118

Query: 111 SKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLI------------AGGISKRPI 170
           SKSFTSL DASS +S+K+IAKPENA+S+KRRNL+A NL+             GGISKRP 
Sbjct: 119 SKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRP- 178

Query: 171 ISSSRSSLALAVVLSSSEIHKNNDLN----SILPPPTLIRPPLYPNGRGSRINSGSAVPS 230
           ISSS+SSLALAV +SSSE + + D N    S  PPP   RPPL+P  R S  N  S VP 
Sbjct: 179 ISSSKSSLALAVAMSSSESNSSEDSNCSSYSSSPPP---RPPLHPQSRPSNNNFPSMVPP 238

[Close]

BLAST of CSPI06G19030 vs. NCBI nr
Match: gi|659104048|ref|XP_008452790.1| (PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 4.7e-43
Identity = 116/196 (59.18%), Postives = 141/196 (71.94%), Query Frame = 1


Query: 51  SSSSSSSIGENSGFSVRSSDNDDGEDNEAESSYKGPLGM-ESLEEVLPIRRGISNFYNGK 110
           S+SSSSSIG NS    +S D D+GE++E +SSYKGPL M +SLEEVLP+R+GIS FY+GK
Sbjct: 60  STSSSSSIGRNSD---QSDDEDNGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGK 119

Query: 111 SKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLI------------AGGISKRPI 170
           SKSFTSL DASS +S+K+IAKPENA+S+KRRNL+A NL+             GGISKRP 
Sbjct: 120 SKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRP- 179

Query: 171 ISSSRSSLALAVVLSSSEIHKNNDLN----SILPPPTLIRPPLYPNGRGSRINSGSAVPS 230
           ISSS+SSLALAV +SSSE + + D N    S  PPP   RPPL+P  R S  N  S VP 
Sbjct: 180 ISSSKSSLALAVAMSSSESNSSEDSNSSSYSSSPPP---RPPLHPQSRPSNNNFPSMVPP 239

[Close]

BLAST of CSPI06G19030 vs. NCBI nr
Match: gi|703105965|ref|XP_010098377.1| (hypothetical protein L484_018609 [Morus notabilis])

HSP 1 Score: 172.6 bits (436), Expect = 8.2e-40
Identity = 120/216 (55.56%), Postives = 147/216 (68.06%), Query Frame = 1


Query: 32  VRREAALADAVAPADVDRCSSSSSSSIGENSGFSVRSS-DNDDGEDNEAESSYKGPLGM- 91
           V+   A  +  + A     +S+SSSSIG+NS  SVRSS D DD E+NEA+SSYKGPL M 
Sbjct: 41  VKESNACNNETSSASASASASASSSSIGKNSDLSVRSSSDGDDCEENEAQSSYKGPLEMM 100

Query: 92  ESLEEVLPIRRGISNFYNGKSKSFTSLVDASSSSSIKDIAKPENAFSRKRRNLLASNLI- 151
           E+LEEVLPIRRGIS FYNGKSKSFTSL DA+S+SSIKDI KPENA++RKRRNL+A N + 
Sbjct: 101 EALEEVLPIRRGISKFYNGKSKSFTSLGDAASTSSIKDITKPENAYTRKRRNLMAFNHVW 160

Query: 152 ------------AGGISKRPIISSSRSSLALAVVLSSSEIHK--NNDLNSILPPPTLIRP 211
                        GGISKRP ISSSRSSLALA+ +SSSE     ++D +S  PPP    P
Sbjct: 161 DNKNRSFPLRSNGGGISKRP-ISSSRSSLALAMAMSSSESSSSTSDDSSSRSPPPL---P 220

Query: 212 PLYPNGRGS-RINSGSAVPSLCKFPTWRSYSMANIQ 230
           PL+P  R S  + S ++ P    F   RS S+A++Q
Sbjct: 221 PLHPQARASFHVKSSTSPPR--HFCASRSLSLADLQ 250

The following BLAST results are available for this feature:

BLAST of CSPI06G19030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G19030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFI7_CUCSA	1.5e-117	99.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361410 PE=4 SV=1	[more]
A0A0A0L451_CUCSA	3.3e-43	59.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648530 PE=4 SV=1	[more]
W9RF79_9ROSA	5.7e-40	55.56	Uncharacterized protein OS=Morus notabilis GN=L484_018609 PE=4 SV=1	[more]
A5B5R8_VITVI	4.5e-37	47.66	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g02000 PE=4 SV=...	[more]
A9PBN9_POPTR	1.9e-35	51.66	MTD1 family protein OS=Populus trichocarpa GN=POPTR_0006s23640g PE=2 SV=1	[more]

BLAST of CSPI06G19030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21940.1	4.8e-30	45.28	unknown protein	[more]
AT3G43850.1	9.7e-23	59.46	unknown protein	[more]
AT2G24550.1	5.0e-11	44.76	unknown protein	[more]
AT4G31510.1	8.0e-09	35.98	unknown protein	[more]
AT5G24890.1	4.0e-08	39.80	unknown protein	[more]

BLAST of CSPI06G19030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452937\|ref\|XP_004144215.1\|	2.2e-117	99.56	PREDICTED: uncharacterized protein LOC101211014 [Cucumis sativus]	[more]
gi\|659089501\|ref\|XP_008445543.1\|	1.1e-108	92.31	PREDICTED: uncharacterized protein LOC103488525 [Cucumis melo]	[more]
gi\|449447177\|ref\|XP_004141345.1\|	4.7e-43	59.18	PREDICTED: vitellogenin-2-like [Cucumis sativus]	[more]
gi\|659104048\|ref\|XP_008452790.1\|	4.7e-43	59.18	PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo]	[more]
gi\|703105965\|ref\|XP_010098377.1\|	8.2e-40	55.56	hypothetical protein L484_018609 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G19030.1	CSPI06G19030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172	FAMILY NOT NAMED	coord: 48..229 score: 6.9
None	No IPR available	PANTHER	PTHR33172:SF6	SUBFAMILY NOT NAMED	coord: 48..229 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G19030	Cla021964	Watermelon (97103) v1	cpiwmB471
CSPI06G19030	Csa6G361410	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G19030	MELO3C011491	Melon (DHL92) v3.5.1	cpimeB464
CSPI06G19030	ClCG08G009780	Watermelon (Charleston Gray)	cpiwcgB522
CSPI06G19030	Lsi08G008290	Bottle gourd (USVL1VR-Ls)	cpilsiB478
CSPI06G19030	MELO3C011491.2	Melon (DHL92) v3.6.1	cpimedB456
CSPI06G19030	CsaV3_6G031910	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G19030	Cla97C08G152580	Watermelon (97103) v2	cpiwmbB513
CSPI06G19030	Bhi04G001194	Wax gourd	cpiwgoB592
CSPI06G19030	Cucsa.055990	Cucumber (Gy14) v1	cgycpiB042
CSPI06G19030	CmaCh05G004110	Cucurbita maxima (Rimu)	cmacpiB816
CSPI06G19030	CmoCh05G004230	Cucurbita moschata (Rifu)	cmocpiB800
CSPI06G19030	Cp4.1LG11g03510	Cucurbita pepo (Zucchini)	cpecpiB117
CSPI06G19030	CsGy6G018470	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G19030	Carg09313	Silver-seed gourd	carcpiB0163

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G19030	Cucurbita pepo (Zucchini)	cpecpiB844
CSPI06G19030	Silver-seed gourd	carcpiB0150
CSPI06G19030	Cucurbita maxima (Rimu)	cmacpiB198
CSPI06G19030	Cucurbita moschata (Rifu)	cmocpiB183