CSPI06G19030.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAAAGTGATGAATGGAAGCCCGGCAGATGAGGATAAGGCCTTGGGCTTTCCTTTTCGGAGTTCTTTATCCTTTTCATTAACTCTCTCATCCTAGATGATATTACTCTTCTCTTCTCCTTCATTAATTGTCTACAAATCCATAATTTTCTATATTTAAATTCTTGTCTCTTCTTCTCTACACAATCTCTCCACTCCCATCGATATATCAATGCCAAACTATATTTCTTAATCTCATCTTCATTTTAAAACTATAATCTTCTTCCTTCTCTATCTCATTTGAATCACTCAATTATGTCAATTGCTCTGGAAACCAATACCGTTTTTTCTCAACCTGGATTGCCCTCTTACTGTTCTGTCTTGAATACCACCGGAATTATTCCGGTAGTTCGGCGAGAGGCGGCTCTTGCTGATGCGGTGGCGCCAGCGGATGTGGATAGATGTAGTTCCTCTTCATCGTCCTCGATCGGAGAAAATAGTGGTTTCTCTGTACGATCATCGGATAATGACGATGGAGAGGATAATGAGGCGGAAAGTTCGTATAAAGGACCTCTAGGAATGGAGTCGTTGGAAGAAGTTCTGCCTATCAGGTTAGCGATTTTTTTTTTTTTTGGGTTCTTCGTAATCTTCTTCTTTTCTATGGTTTCAAGATTTAGAGCAACTTGATCTATCGCTTGTTGATTTCGAGATTCAGTTGAGTTTTGACAAATTATATCATCTTGTGAATGTTATGCAGGAGAGGAATTTCAAATTTCTATAACGGGAAATCGAAATCCTTCACAAGTCTAGTAGACGCTTCCTCCTCCTCCTCCATTAAAGACATAGCGAAGCCTGAAAACGCTTTCTCTCGAAAACGGAGGAATCTTCTTGCATCTAATCTAATCGCCGGCGGCATATCAAAGCGTCCGATTATTAGTTCAAGTCGAAGCTCGTTAGCGTTGGCCGTCGTCCTGAGCAGTTCTGAAATCCACAAAAATAACGATCTGAATTCAATATTACCTCCGCCGACGCTGATTCGTCCTCCATTGTACCCCAATGGGCGAGGATCTCGTATCAATTCAGGTTCTGCAGTTCCATCTCTCTGTAAATTCCCAACTTGGCGATCATACTCCATGGCCAATATACAGTAGCTAGCGTAGGGAAGGGTTTTCCCATGGCGTCCATGGAAGCTAAATCACCATGAAAGACTAACTTAACCTCTTGTGAAACCGAGTTTCATCGAATTGGTTTCTGACGAATAACTCATTTTCTTTCAAATTTCCCACGATCTTAGGAACTCTGTTTTGATTTCCTTTTTGTATGAATGTATGTAAAGTGAAAAGAGAAAAAGCATAGCAGTTCATATTTTGAATCGATTTCTGTTTGTTCATACAATTTGAATCAGCAAATGGAGAGAGCATGAGAGTTTCTTTTTTTAAATAAAGTAATGGGAAAAATACAGATAAAAGTTTGGGGCAAACTGAAAAGGAATTGGTAATGAATGTGTCAATGTCATATAAAGCTGATGGACTAA ATGTCAATTGCTCTGGAAACCAATACCGTTTTTTCTCAACCTGGATTGCCCTCTTACTGTTCTGTCTTGAATACCACCGGAATTATTCCGGTAGTTCGGCGAGAGGCGGCTCTTGCTGATGCGGTGGCGCCAGCGGATGTGGATAGATGTAGTTCCTCTTCATCGTCCTCGATCGGAGAAAATAGTGGTTTCTCTGTACGATCATCGGATAATGACGATGGAGAGGATAATGAGGCGGAAAGTTCGTATAAAGGACCTCTAGGAATGGAGTCGTTGGAAGAAGTTCTGCCTATCAGGAGAGGAATTTCAAATTTCTATAACGGGAAATCGAAATCCTTCACAAGTCTAGTAGACGCTTCCTCCTCCTCCTCCATTAAAGACATAGCGAAGCCTGAAAACGCTTTCTCTCGAAAACGGAGGAATCTTCTTGCATCTAATCTAATCGCCGGCGGCATATCAAAGCGTCCGATTATTAGTTCAAGTCGAAGCTCGTTAGCGTTGGCCGTCGTCCTGAGCAGTTCTGAAATCCACAAAAATAACGATCTGAATTCAATATTACCTCCGCCGACGCTGATTCGTCCTCCATTGTACCCCAATGGGCGAGGATCTCGTATCAATTCAGGTTCTGCAGTTCCATCTCTCTGTAAATTCCCAACTTGGCGATCATACTCCATGGCCAATATACAGTAG ATGTCAATTGCTCTGGAAACCAATACCGTTTTTTCTCAACCTGGATTGCCCTCTTACTGTTCTGTCTTGAATACCACCGGAATTATTCCGGTAGTTCGGCGAGAGGCGGCTCTTGCTGATGCGGTGGCGCCAGCGGATGTGGATAGATGTAGTTCCTCTTCATCGTCCTCGATCGGAGAAAATAGTGGTTTCTCTGTACGATCATCGGATAATGACGATGGAGAGGATAATGAGGCGGAAAGTTCGTATAAAGGACCTCTAGGAATGGAGTCGTTGGAAGAAGTTCTGCCTATCAGGAGAGGAATTTCAAATTTCTATAACGGGAAATCGAAATCCTTCACAAGTCTAGTAGACGCTTCCTCCTCCTCCTCCATTAAAGACATAGCGAAGCCTGAAAACGCTTTCTCTCGAAAACGGAGGAATCTTCTTGCATCTAATCTAATCGCCGGCGGCATATCAAAGCGTCCGATTATTAGTTCAAGTCGAAGCTCGTTAGCGTTGGCCGTCGTCCTGAGCAGTTCTGAAATCCACAAAAATAACGATCTGAATTCAATATTACCTCCGCCGACGCTGATTCGTCCTCCATTGTACCCCAATGGGCGAGGATCTCGTATCAATTCAGGTTCTGCAGTTCCATCTCTCTGTAAATTCCCAACTTGGCGATCATACTCCATGGCCAATATACAGTAG
BLAST of CSPI06G19030.1 vs. TrEMBL
Match: A0A0A0KFI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361410 PE=4 SV=1) HSP 1 Score: 430.3 bits (1105), Expect = 1.5e-117 Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. TrEMBL
Match: A0A0A0L451_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648530 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 3.3e-43 Identity = 116/196 (59.18%), Postives = 141/196 (71.94%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. TrEMBL
Match: W9RF79_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018609 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 5.7e-40 Identity = 120/216 (55.56%), Postives = 147/216 (68.06%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. TrEMBL
Match: A5B5R8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g02000 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 4.5e-37 Identity = 112/235 (47.66%), Postives = 148/235 (62.98%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. TrEMBL
Match: A9PBN9_POPTR (MTD1 family protein OS=Populus trichocarpa GN=POPTR_0006s23640g PE=2 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35 Identity = 109/211 (51.66%), Postives = 138/211 (65.40%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. TAIR10
Match: AT5G21940.1 (AT5G21940.1 unknown protein) HSP 1 Score: 128.6 bits (322), Expect = 4.8e-30 Identity = 96/212 (45.28%), Postives = 129/212 (60.85%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. TAIR10
Match: AT3G43850.1 (AT3G43850.1 unknown protein) HSP 1 Score: 104.4 bits (259), Expect = 9.7e-23 Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. TAIR10
Match: AT2G24550.1 (AT2G24550.1 unknown protein) HSP 1 Score: 65.5 bits (158), Expect = 5.0e-11 Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. TAIR10
Match: AT4G31510.1 (AT4G31510.1 unknown protein) HSP 1 Score: 58.2 bits (139), Expect = 8.0e-09 Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. TAIR10
Match: AT5G24890.1 (AT5G24890.1 unknown protein) HSP 1 Score: 55.8 bits (133), Expect = 4.0e-08 Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. NCBI nr
Match: gi|449452937|ref|XP_004144215.1| (PREDICTED: uncharacterized protein LOC101211014 [Cucumis sativus]) HSP 1 Score: 430.3 bits (1105), Expect = 2.2e-117 Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. NCBI nr
Match: gi|659089501|ref|XP_008445543.1| (PREDICTED: uncharacterized protein LOC103488525 [Cucumis melo]) HSP 1 Score: 401.4 bits (1030), Expect = 1.1e-108 Identity = 216/234 (92.31%), Postives = 222/234 (94.87%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. NCBI nr
Match: gi|449447177|ref|XP_004141345.1| (PREDICTED: vitellogenin-2-like [Cucumis sativus]) HSP 1 Score: 183.3 bits (464), Expect = 4.7e-43 Identity = 116/196 (59.18%), Postives = 141/196 (71.94%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. NCBI nr
Match: gi|659104048|ref|XP_008452790.1| (PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo]) HSP 1 Score: 183.3 bits (464), Expect = 4.7e-43 Identity = 116/196 (59.18%), Postives = 141/196 (71.94%), Query Frame = 1
BLAST of CSPI06G19030.1 vs. NCBI nr
Match: gi|703105965|ref|XP_010098377.1| (hypothetical protein L484_018609 [Morus notabilis]) HSP 1 Score: 172.6 bits (436), Expect = 8.2e-40 Identity = 120/216 (55.56%), Postives = 147/216 (68.06%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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