CSPI05G22350 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G22350
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 22820258 .. 22820751 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTCTCAGAAAACTTCCGTAAGGACATGGGGTTCGAATTTGACCCCGAAAAATGGGTCATTACTGGAATTCAATTACGACCTCCTCTATTGCTCACCATTAACAAAGAACACAGTCATTGCGACAATGAAGACCAACCGCCGACGCCTACTGGAGATGAATGCCGGATCCTATCGGGTTCCAAATGCCCACCCGCCCCTAAGAAGCCTAAATCTTCGTTGAAATTCAACCACGGCAACGTGCGGCAATTCTTCAAGCCTCCCGACTTAGAGGTTGTTTTTAGCCGACATGTCGAAAGGGCTAATTGAATAACAGCTCCATGGCTTCTTAACTTTAGCTATTACCCTTTCCAATCTTTGTTTTTTCTCTTTTTTTTGTTCGTTTCTTTTCTTAGTTGGTGCACTGTATAGAGATTGTAAAACGTAGCCAGTCAAAGCTGGTGGTTTCTGCCATTCAGATGGGCAGGAAGAACCAAAATTTTACCTTCTAA

mRNA sequence

ATGCCGTTCTCAGAAAACTTCCGTAAGGACATGGGGTTCGAATTTGACCCCGAAAAATGGGTCATTACTGGAATTCAATTACGACCTCCTCTATTGCTCACCATTAACAAAGAACACAGTCATTGCGACAATGAAGACCAACCGCCGACGCCTACTGGAGATGAATGCCGGATCCTATCGGGTTCCAAATGCCCACCCGCCCCTAAGAAGCCTAAATCTTCGTTGAAATTCAACCACGGCAACGTGCGGCAATTCTTCAAGCCTCCCGACTTAGAGTTGGTGCACTGTATAGAGATTGTAAAACGTAGCCAGTCAAAGCTGGTGGTTTCTGCCATTCAGATGGGCAGGAAGAACCAAAATTTTACCTTCTAA

Coding sequence (CDS)

ATGCCGTTCTCAGAAAACTTCCGTAAGGACATGGGGTTCGAATTTGACCCCGAAAAATGGGTCATTACTGGAATTCAATTACGACCTCCTCTATTGCTCACCATTAACAAAGAACACAGTCATTGCGACAATGAAGACCAACCGCCGACGCCTACTGGAGATGAATGCCGGATCCTATCGGGTTCCAAATGCCCACCCGCCCCTAAGAAGCCTAAATCTTCGTTGAAATTCAACCACGGCAACGTGCGGCAATTCTTCAAGCCTCCCGACTTAGAGTTGGTGCACTGTATAGAGATTGTAAAACGTAGCCAGTCAAAGCTGGTGGTTTCTGCCATTCAGATGGGCAGGAAGAACCAAAATTTTACCTTCTAA

Homology

[Close]

BLAST of CSPI05G22350 vs. TrEMBL
Match: A0A0A0KVI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598740 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.0e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60
           MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS
Sbjct: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60

Query: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120
           GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN
Sbjct: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120

Query: 121 FTF 124
           FTF
Sbjct: 121 FTF 123

[Close]

BLAST of CSPI05G22350 vs. TrEMBL
Match: A0A067JRX4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17805 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPL--LLTINKEHSHCDNEDQPPTPTGDECRI 60
          M FS   + D G E D +KWVI GI LR PL  + T   +     + D   TPT +E RI
Sbjct: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNPVDKESESDHDCSTTPTSEESRI 60

Query: 61 LSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
           +   CPPAPKK K++LK N+  VR+FF PPDL+ V
Sbjct: 61 SARLTCPPAPKKRKATLKCNYNGVREFFTPPDLDTV 96

[Close]

BLAST of CSPI05G22350 vs. TrEMBL
Match: F6H7W9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0225g00120 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 3   FSENFRKDMGFEFDPEKWVITGIQLRPPL----LLTINKEHSHCDNEDQPPTPTGDECRI 62
           F+E  + D G E + +KWVI+GIQLR PL       + KE    +  ++  TPT +E RI
Sbjct: 4   FAEKLQVDGGLESENKKWVISGIQLRAPLKPVYTSPVGKERD--EEGEECSTPTYEEARI 63

Query: 63  LSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQS 106
            +   CPPAP+K K S + N+  VR+FF PPDLE V  I  V+R+ S
Sbjct: 64  PTTLTCPPAPRKRKPSSRCNYNGVREFFTPPDLETVF-IRHVERASS 107

[Close]

BLAST of CSPI05G22350 vs. TrEMBL
Match: B9SPK0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0024670 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINK---EHSHCDNEDQPPTPTGDECR 60
          M FS   + D G E D +KWVI GI LR PL     K   E     N++   TPT ++ R
Sbjct: 1  MGFSGKTQVDNGLELDSKKWVIAGIPLRAPLKPIYTKPVVEKESDQNDECSTTPTSEQAR 60

Query: 61 ILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
            +   CPPAPKK K++LK N+ N R+FF PPDLE V
Sbjct: 61 TPARLMCPPAPKKRKATLKCNYSN-REFFIPPDLETV 96

[Close]

BLAST of CSPI05G22350 vs. TrEMBL
Match: W1P4C4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00083p00042830 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.9e-12
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 1


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPL---LLTINKEHSHCDNEDQPPTPTGDECR 60
           M +SE FR + G + D +KW+I GI  R PL   ++  +      D +++  TPT  E R
Sbjct: 1   MGYSEKFRDEEGAKQDGKKWIIAGIPSRNPLSPIIINPSSNEGKFDGDERSRTPTSKEAR 60

Query: 61  ILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKR 103
           I     CPPAP+KPK S KF     ++FF  PDL+ +  I   +R
Sbjct: 61  IPEKLPCPPAPRKPKLSSKFPMNGFKEFFSSPDLDALFTIHFKER 105

[Close]

BLAST of CSPI05G22350 vs. TAIR10
Match: AT5G40460.1 (AT5G40460.1 unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLR------------PPLLLTINKEHSHCDNEDQP 60
           M FS+  + + G E D +KWVI GI +R            PP ++T  +E  + + E+  
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  PTPTGDECRILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPP-DLELV 95
            TPT  E +I    +CPPAP+K + +LK     VR+FF PP DLE V
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNVVREFFTPPSDLETV 107

[Close]

BLAST of CSPI05G22350 vs. TAIR10
Match: AT1G60783.1 (AT1G60783.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-10
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 18  EKWVITGIQLRP---PLLLTINKEHSHCDNEDQPPTPTGDECRILSGSKCPPAPKKPKSS 77
           +K VITGI L     P+ L+ +   +  D +  P TPT D  RI +   CPPAPKK K +
Sbjct: 22  KKCVITGISLHSTVKPISLSSSAVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLT 81

Query: 78  LKFNHGNVRQFFKPPDLELV 95
           LK ++G  R+FF PPDLE V
Sbjct: 82  LKVSYGP-REFFSPPDLETV 100

[Close]

BLAST of CSPI05G22350 vs. NCBI nr
Match: gi|700196589|gb|KGN51766.1| (hypothetical protein Csa_5G598740 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.5e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60
           MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS
Sbjct: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60

Query: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120
           GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN
Sbjct: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120

Query: 121 FTF 124
           FTF
Sbjct: 121 FTF 123

[Close]

BLAST of CSPI05G22350 vs. NCBI nr
Match: gi|659090731|ref|XP_008446170.1| (PREDICTED: uncharacterized protein LOC103488975 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 4.9e-47
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60
          M FSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEH+HCDNEDQPPTPTGDECRI S
Sbjct: 1  MAFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHNHCDNEDQPPTPTGDECRIRS 60

Query: 61 GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
          GSKCPPAPKKPKSSLKFNH N+RQFFKPPDLE+V
Sbjct: 61 GSKCPPAPKKPKSSLKFNHSNMRQFFKPPDLEVV 94

[Close]

BLAST of CSPI05G22350 vs. NCBI nr
Match: gi|802724853|ref|XP_012085871.1| (PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas])

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-13
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPL--LLTINKEHSHCDNEDQPPTPTGDECRI 60
          M FS   + D G E D +KWVI GI LR PL  + T   +     + D   TPT +E RI
Sbjct: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNPVDKESESDHDCSTTPTSEESRI 60

Query: 61 LSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
           +   CPPAPKK K++LK N+  VR+FF PPDL+ V
Sbjct: 61 SARLTCPPAPKKRKATLKCNYNGVREFFTPPDLDTV 96

[Close]

BLAST of CSPI05G22350 vs. NCBI nr
Match: gi|225470585|ref|XP_002273869.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Vitis vinifera])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 3   FSENFRKDMGFEFDPEKWVITGIQLRPPL----LLTINKEHSHCDNEDQPPTPTGDECRI 62
           F+E  + D G E + +KWVI+GIQLR PL       + KE    +  ++  TPT +E RI
Sbjct: 4   FAEKLQVDGGLESENKKWVISGIQLRAPLKPVYTSPVGKERD--EEGEECSTPTYEEARI 63

Query: 63  LSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQS 106
            +   CPPAP+K K S + N+  VR+FF PPDLE V  I  V+R+ S
Sbjct: 64  PTTLTCPPAPRKRKPSSRCNYNGVREFFTPPDLETVF-IRHVERASS 107

[Close]

BLAST of CSPI05G22350 vs. NCBI nr
Match: gi|1000948938|ref|XP_015580091.1| (PREDICTED: uncharacterized protein LOC8273497 [Ricinus communis])

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINK---EHSHCDNEDQPPTPTGDECR 60
          M FS   + D G E D +KWVI GI LR PL     K   E     N++   TPT ++ R
Sbjct: 1  MGFSGKTQVDNGLELDSKKWVIAGIPLRAPLKPIYTKPVVEKESDQNDECSTTPTSEQAR 60

Query: 61 ILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
            +   CPPAPKK K++LK N+ N R+FF PPDLE V
Sbjct: 61 TPARLMCPPAPKKRKATLKCNYSN-REFFIPPDLETV 96

The following BLAST results are available for this feature:

BLAST of CSPI05G22350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G22350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVI5_CUCSA	1.0e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598740 PE=4 SV=1	[more]
A0A067JRX4_JATCU	3.2e-13	46.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17805 PE=4 SV=1	[more]
F6H7W9_VITVI	1.6e-12	43.93	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0225g00120 PE=4 SV=...	[more]
B9SPK0_RICCO	2.7e-12	46.39	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0024670 PE=4 SV=1	[more]
W1P4C4_AMBTC	7.9e-12	38.10	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00083p00042830 PE=4 SV=...	[more]

BLAST of CSPI05G22350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40460.1	3.2e-12	38.32	unknown protein	[more]
AT1G60783.1	3.9e-10	46.25	unknown protein	[more]

BLAST of CSPI05G22350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196589\|gb\|KGN51766.1\|	1.5e-67	100.00	hypothetical protein Csa_5G598740 [Cucumis sativus]	[more]
gi\|659090731\|ref\|XP_008446170.1\|	4.9e-47	93.62	PREDICTED: uncharacterized protein LOC103488975 [Cucumis melo]	[more]
gi\|802724853\|ref\|XP_012085871.1\|	4.6e-13	46.88	PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]	[more]
gi\|225470585\|ref\|XP_002273869.1\|	2.3e-12	43.93	PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Vitis vinifera]	[more]
gi\|1000948938\|ref\|XP_015580091.1\|	3.9e-12	46.39	PREDICTED: uncharacterized protein LOC8273497 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G22350.1	CSPI05G22350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 3..94 score: 2.3
None	No IPR available	PANTHER	PTHR33142:SF2	SUBFAMILY NOT NAMED	coord: 3..94 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G22350	Csa5G598740	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G22350	MELO3C011958	Melon (DHL92) v3.5.1	cpimeB369
CSPI05G22350	Lsi04G005830	Bottle gourd (USVL1VR-Ls)	cpilsiB372
CSPI05G22350	MELO3C011958.2	Melon (DHL92) v3.6.1	cpimedB363
CSPI05G22350	CsaV3_5G031210	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G22350	Cla97C05G107880	Watermelon (97103) v2	cpiwmbB402
CSPI05G22350	Bhi07G001423	Wax gourd	cpiwgoB516
CSPI05G22350	Cucsa.286400	Cucumber (Gy14) v1	cgycpiB432
CSPI05G22350	CmaCh04G017560	Cucurbita maxima (Rimu)	cmacpiB758
CSPI05G22350	CmoCh04G018470	Cucurbita moschata (Rifu)	cmocpiB748
CSPI05G22350	CsGy5G021820	Cucumber (Gy14) v2	cgybcpiB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G22350	Watermelon (97103) v2	cpiwmbB421
CSPI05G22350	Wax gourd	cpiwgoB493
CSPI05G22350	Wax gourd	cpiwgoB501
CSPI05G22350	Wild cucumber (PI 183967)	cpicpiB035
CSPI05G22350	Wild cucumber (PI 183967)	cpicpiB076
CSPI05G22350	Cucumber (Gy14) v1	cgycpiB109
CSPI05G22350	Cucumber (Gy14) v1	cgycpiB580
CSPI05G22350	Cucurbita maxima (Rimu)	cmacpiB193
CSPI05G22350	Cucurbita maxima (Rimu)	cmacpiB419
CSPI05G22350	Cucurbita maxima (Rimu)	cmacpiB814
CSPI05G22350	Cucurbita moschata (Rifu)	cmocpiB177
CSPI05G22350	Cucurbita moschata (Rifu)	cmocpiB407
CSPI05G22350	Cucurbita moschata (Rifu)	cmocpiB797
CSPI05G22350	Cucumber (Chinese Long) v2	cpicuB220
CSPI05G22350	Melon (DHL92) v3.5.1	cpimeB381
CSPI05G22350	Melon (DHL92) v3.5.1	cpimeB389
CSPI05G22350	Watermelon (Charleston Gray)	cpiwcgB395
CSPI05G22350	Watermelon (Charleston Gray)	cpiwcgB412
CSPI05G22350	Watermelon (Charleston Gray)	cpiwcgB429
CSPI05G22350	Watermelon (97103) v1	cpiwmB410
CSPI05G22350	Cucurbita pepo (Zucchini)	cpecpiB042
CSPI05G22350	Cucurbita pepo (Zucchini)	cpecpiB116
CSPI05G22350	Cucurbita pepo (Zucchini)	cpecpiB440
CSPI05G22350	Cucurbita pepo (Zucchini)	cpecpiB838
CSPI05G22350	Bottle gourd (USVL1VR-Ls)	cpilsiB353
CSPI05G22350	Bottle gourd (USVL1VR-Ls)	cpilsiB392
CSPI05G22350	Melon (DHL92) v3.6.1	cpimedB376
CSPI05G22350	Melon (DHL92) v3.6.1	cpimedB383
CSPI05G22350	Cucumber (Gy14) v2	cgybcpiB036
CSPI05G22350	Cucumber (Gy14) v2	cgybcpiB077
CSPI05G22350	Silver-seed gourd	carcpiB0275
CSPI05G22350	Silver-seed gourd	carcpiB0538
CSPI05G22350	Silver-seed gourd	carcpiB0759
CSPI05G22350	Silver-seed gourd	carcpiB0658
CSPI05G22350	Cucumber (Chinese Long) v3	cpicucB258
CSPI05G22350	Cucumber (Chinese Long) v3	cpicucB261