CSPI05G22350.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G22350.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 22820258 .. 22820751 (-)
Sequence length	372

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTCTCAGAAAACTTCCGTAAGGACATGGGGTTCGAATTTGACCCCGAAAAATGGGTCATTACTGGAATTCAATTACGACCTCCTCTATTGCTCACCATTAACAAAGAACACAGTCATTGCGACAATGAAGACCAACCGCCGACGCCTACTGGAGATGAATGCCGGATCCTATCGGGTTCCAAATGCCCACCCGCCCCTAAGAAGCCTAAATCTTCGTTGAAATTCAACCACGGCAACGTGCGGCAATTCTTCAAGCCTCCCGACTTAGAGGTTGTTTTTAGCCGACATGTCGAAAGGGCTAATTGAATAACAGCTCCATGGCTTCTTAACTTTAGCTATTACCCTTTCCAATCTTTGTTTTTTCTCTTTTTTTTGTTCGTTTCTTTTCTTAGTTGGTGCACTGTATAGAGATTGTAAAACGTAGCCAGTCAAAGCTGGTGGTTTCTGCCATTCAGATGGGCAGGAAGAACCAAAATTTTACCTTCTAA

mRNA sequence

ATGCCGTTCTCAGAAAACTTCCGTAAGGACATGGGGTTCGAATTTGACCCCGAAAAATGGGTCATTACTGGAATTCAATTACGACCTCCTCTATTGCTCACCATTAACAAAGAACACAGTCATTGCGACAATGAAGACCAACCGCCGACGCCTACTGGAGATGAATGCCGGATCCTATCGGGTTCCAAATGCCCACCCGCCCCTAAGAAGCCTAAATCTTCGTTGAAATTCAACCACGGCAACGTGCGGCAATTCTTCAAGCCTCCCGACTTAGAGTTGGTGCACTGTATAGAGATTGTAAAACGTAGCCAGTCAAAGCTGGTGGTTTCTGCCATTCAGATGGGCAGGAAGAACCAAAATTTTACCTTCTAA

Coding sequence (CDS)

ATGCCGTTCTCAGAAAACTTCCGTAAGGACATGGGGTTCGAATTTGACCCCGAAAAATGGGTCATTACTGGAATTCAATTACGACCTCCTCTATTGCTCACCATTAACAAAGAACACAGTCATTGCGACAATGAAGACCAACCGCCGACGCCTACTGGAGATGAATGCCGGATCCTATCGGGTTCCAAATGCCCACCCGCCCCTAAGAAGCCTAAATCTTCGTTGAAATTCAACCACGGCAACGTGCGGCAATTCTTCAAGCCTCCCGACTTAGAGTTGGTGCACTGTATAGAGATTGTAAAACGTAGCCAGTCAAAGCTGGTGGTTTCTGCCATTCAGATGGGCAGGAAGAACCAAAATTTTACCTTCTAA

Homology

[Close]

BLAST of CSPI05G22350.1 vs. TrEMBL
Match: A0A0A0KVI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598740 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.0e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60
           MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS
Sbjct: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60

Query: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120
           GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN
Sbjct: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120

Query: 121 FTF 124
           FTF
Sbjct: 121 FTF 123

[Close]

BLAST of CSPI05G22350.1 vs. TrEMBL
Match: A0A067JRX4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17805 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPL--LLTINKEHSHCDNEDQPPTPTGDECRI 60
          M FS   + D G E D +KWVI GI LR PL  + T   +     + D   TPT +E RI
Sbjct: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNPVDKESESDHDCSTTPTSEESRI 60

Query: 61 LSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
           +   CPPAPKK K++LK N+  VR+FF PPDL+ V
Sbjct: 61 SARLTCPPAPKKRKATLKCNYNGVREFFTPPDLDTV 96

[Close]

BLAST of CSPI05G22350.1 vs. TrEMBL
Match: F6H7W9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0225g00120 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 3   FSENFRKDMGFEFDPEKWVITGIQLRPPL----LLTINKEHSHCDNEDQPPTPTGDECRI 62
           F+E  + D G E + +KWVI+GIQLR PL       + KE    +  ++  TPT +E RI
Sbjct: 4   FAEKLQVDGGLESENKKWVISGIQLRAPLKPVYTSPVGKERD--EEGEECSTPTYEEARI 63

Query: 63  LSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQS 106
            +   CPPAP+K K S + N+  VR+FF PPDLE V  I  V+R+ S
Sbjct: 64  PTTLTCPPAPRKRKPSSRCNYNGVREFFTPPDLETVF-IRHVERASS 107

[Close]

BLAST of CSPI05G22350.1 vs. TrEMBL
Match: B9SPK0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0024670 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINK---EHSHCDNEDQPPTPTGDECR 60
          M FS   + D G E D +KWVI GI LR PL     K   E     N++   TPT ++ R
Sbjct: 1  MGFSGKTQVDNGLELDSKKWVIAGIPLRAPLKPIYTKPVVEKESDQNDECSTTPTSEQAR 60

Query: 61 ILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
            +   CPPAPKK K++LK N+ N R+FF PPDLE V
Sbjct: 61 TPARLMCPPAPKKRKATLKCNYSN-REFFIPPDLETV 96

[Close]

BLAST of CSPI05G22350.1 vs. TrEMBL
Match: W1P4C4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00083p00042830 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.9e-12
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 1


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPL---LLTINKEHSHCDNEDQPPTPTGDECR 60
           M +SE FR + G + D +KW+I GI  R PL   ++  +      D +++  TPT  E R
Sbjct: 1   MGYSEKFRDEEGAKQDGKKWIIAGIPSRNPLSPIIINPSSNEGKFDGDERSRTPTSKEAR 60

Query: 61  ILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKR 103
           I     CPPAP+KPK S KF     ++FF  PDL+ +  I   +R
Sbjct: 61  IPEKLPCPPAPRKPKLSSKFPMNGFKEFFSSPDLDALFTIHFKER 105

[Close]

BLAST of CSPI05G22350.1 vs. TAIR10
Match: AT5G40460.1 (AT5G40460.1 unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLR------------PPLLLTINKEHSHCDNEDQP 60
           M FS+  + + G E D +KWVI GI +R            PP ++T  +E  + + E+  
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  PTPTGDECRILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPP-DLELV 95
            TPT  E +I    +CPPAP+K + +LK     VR+FF PP DLE V
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNVVREFFTPPSDLETV 107

[Close]

BLAST of CSPI05G22350.1 vs. TAIR10
Match: AT1G60783.1 (AT1G60783.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-10
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 18  EKWVITGIQLRP---PLLLTINKEHSHCDNEDQPPTPTGDECRILSGSKCPPAPKKPKSS 77
           +K VITGI L     P+ L+ +   +  D +  P TPT D  RI +   CPPAPKK K +
Sbjct: 22  KKCVITGISLHSTVKPISLSSSAVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLT 81

Query: 78  LKFNHGNVRQFFKPPDLELV 95
           LK ++G  R+FF PPDLE V
Sbjct: 82  LKVSYGP-REFFSPPDLETV 100

[Close]

BLAST of CSPI05G22350.1 vs. NCBI nr
Match: gi|700196589|gb|KGN51766.1| (hypothetical protein Csa_5G598740 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.5e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60
           MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS
Sbjct: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60

Query: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120
           GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN
Sbjct: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120

Query: 121 FTF 124
           FTF
Sbjct: 121 FTF 123

[Close]

BLAST of CSPI05G22350.1 vs. NCBI nr
Match: gi|659090731|ref|XP_008446170.1| (PREDICTED: uncharacterized protein LOC103488975 [Cucumis melo])

HSP 1 Score: 195.7 bits (496), Expect = 4.9e-47
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60
          M FSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEH+HCDNEDQPPTPTGDECRI S
Sbjct: 1  MAFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHNHCDNEDQPPTPTGDECRIRS 60

Query: 61 GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
          GSKCPPAPKKPKSSLKFNH N+RQFFKPPDLE+V
Sbjct: 61 GSKCPPAPKKPKSSLKFNHSNMRQFFKPPDLEVV 94

[Close]

BLAST of CSPI05G22350.1 vs. NCBI nr
Match: gi|802724853|ref|XP_012085871.1| (PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas])

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-13
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPL--LLTINKEHSHCDNEDQPPTPTGDECRI 60
          M FS   + D G E D +KWVI GI LR PL  + T   +     + D   TPT +E RI
Sbjct: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNPVDKESESDHDCSTTPTSEESRI 60

Query: 61 LSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
           +   CPPAPKK K++LK N+  VR+FF PPDL+ V
Sbjct: 61 SARLTCPPAPKKRKATLKCNYNGVREFFTPPDLDTV 96

[Close]

BLAST of CSPI05G22350.1 vs. NCBI nr
Match: gi|225470585|ref|XP_002273869.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Vitis vinifera])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1


Query: 3   FSENFRKDMGFEFDPEKWVITGIQLRPPL----LLTINKEHSHCDNEDQPPTPTGDECRI 62
           F+E  + D G E + +KWVI+GIQLR PL       + KE    +  ++  TPT +E RI
Sbjct: 4   FAEKLQVDGGLESENKKWVISGIQLRAPLKPVYTSPVGKERD--EEGEECSTPTYEEARI 63

Query: 63  LSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQS 106
            +   CPPAP+K K S + N+  VR+FF PPDLE V  I  V+R+ S
Sbjct: 64  PTTLTCPPAPRKRKPSSRCNYNGVREFFTPPDLETVF-IRHVERASS 107

[Close]

BLAST of CSPI05G22350.1 vs. NCBI nr
Match: gi|1000948938|ref|XP_015580091.1| (PREDICTED: uncharacterized protein LOC8273497 [Ricinus communis])

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-12
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINK---EHSHCDNEDQPPTPTGDECR 60
          M FS   + D G E D +KWVI GI LR PL     K   E     N++   TPT ++ R
Sbjct: 1  MGFSGKTQVDNGLELDSKKWVIAGIPLRAPLKPIYTKPVVEKESDQNDECSTTPTSEQAR 60

Query: 61 ILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 95
            +   CPPAPKK K++LK N+ N R+FF PPDLE V
Sbjct: 61 TPARLMCPPAPKKRKATLKCNYSN-REFFIPPDLETV 96

The following BLAST results are available for this feature:

BLAST of CSPI05G22350.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G22350.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVI5_CUCSA	1.0e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598740 PE=4 SV=1	[more]
A0A067JRX4_JATCU	3.2e-13	46.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17805 PE=4 SV=1	[more]
F6H7W9_VITVI	1.6e-12	43.93	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0225g00120 PE=4 SV=...	[more]
B9SPK0_RICCO	2.7e-12	46.39	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0024670 PE=4 SV=1	[more]
W1P4C4_AMBTC	7.9e-12	38.10	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00083p00042830 PE=4 SV=...	[more]

BLAST of CSPI05G22350.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40460.1	3.2e-12	38.32	unknown protein	[more]
AT1G60783.1	3.9e-10	46.25	unknown protein	[more]

BLAST of CSPI05G22350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196589\|gb\|KGN51766.1\|	1.5e-67	100.00	hypothetical protein Csa_5G598740 [Cucumis sativus]	[more]
gi\|659090731\|ref\|XP_008446170.1\|	4.9e-47	93.62	PREDICTED: uncharacterized protein LOC103488975 [Cucumis melo]	[more]
gi\|802724853\|ref\|XP_012085871.1\|	4.6e-13	46.88	PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]	[more]
gi\|225470585\|ref\|XP_002273869.1\|	2.3e-12	43.93	PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Vitis vinifera]	[more]
gi\|1000948938\|ref\|XP_015580091.1\|	3.9e-12	46.39	PREDICTED: uncharacterized protein LOC8273497 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G22350	CSPI05G22350	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G22350.1	CSPI05G22350.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G22350.1.cds2	CSPI05G22350.1.cds2	CDS
CSPI05G22350.1.cds1	CSPI05G22350.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 3..94 score: 2.3
None	No IPR available	PANTHER	PTHR33142:SF2	SUBFAMILY NOT NAMED	coord: 3..94 score: 2.3