CmoCh04G018470 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G018470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	EXG1
Location	Cmo_Chr04 : 9283140 .. 9283433 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTCCAATTCGATCCCAGAAAATGGGTCATCACGGGAATTCAGTCACGACCTCCTCTTGTGCCTATTTACACGAATCTCATTCACAAAGAACTCGATCACTGTGACACAGAAGACCAACCGCCGACGCCGACAGGAGACGACTGTCGGATCCGGTCCGGTTCAAAATGCCCGCCCGCCCCCAAGAAGCGAAAATCTTCTATGAAATTCAACCATGGGAATGTGAGGCAGTTCTTCAAGCCTCCGGATTTAGAGGTTGTCTTTAGTCGACATGTCGAGAGGGCTAATTGA

mRNA sequence

ATGGGCTTCCAATTCGATCCCAGAAAATGGGTCATCACGGGAATTCAGTCACGACCTCCTCTTGTGCCTATTTACACGAATCTCATTCACAAAGAACTCGATCACTGTGACACAGAAGACCAACCGCCGACGCCGACAGGAGACGACTGTCGGATCCGGTCCGGTTCAAAATGCCCGCCCGCCCCCAAGAAGCGAAAATCTTCTATGAAATTCAACCATGGGAATGTGAGGCAGTTCTTCAAGCCTCCGGATTTAGAGGTTGTCTTTAGTCGACATGTCGAGAGGGCTAATTGA

Coding sequence (CDS)

ATGGGCTTCCAATTCGATCCCAGAAAATGGGTCATCACGGGAATTCAGTCACGACCTCCTCTTGTGCCTATTTACACGAATCTCATTCACAAAGAACTCGATCACTGTGACACAGAAGACCAACCGCCGACGCCGACAGGAGACGACTGTCGGATCCGGTCCGGTTCAAAATGCCCGCCCGCCCCCAAGAAGCGAAAATCTTCTATGAAATTCAACCATGGGAATGTGAGGCAGTTCTTCAAGCCTCCGGATTTAGAGGTTGTCTTTAGTCGACATGTCGAGAGGGCTAATTGA

Homology

[Close]

BLAST of CmoCh04G018470 vs. TrEMBL
Match: A0A0A0KVI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598740 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.9e-33
Identity = 69/88 (78.41%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 1  MGFQFDPRKWVITGIQSRPPLVPIYTNLIHKELDHCDTEDQPPTPTGDDCRIRSGSKCPP 60
          MGF+FDP KWVITGIQ RPPL+      I+KE  HCD EDQPPTPTGD+CRI SGSKCPP
Sbjct: 11 MGFEFDPEKWVITGIQLRPPLLLT----INKEHSHCDNEDQPPTPTGDECRILSGSKCPP 70

Query: 61 APKKRKSSMKFNHGNVRQFFKPPDLEVV 89
          APKK KSS+KFNHGNVRQFFKPPDLE+V
Sbjct: 71 APKKPKSSLKFNHGNVRQFFKPPDLELV 94

[Close]

BLAST of CmoCh04G018470 vs. TrEMBL
Match: A0A067H3K0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033782mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 53/100 (53.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 2   GFQFDPRKWVITGIQSRPPLVPIYTN----LIHKELDHCDTEDQPPTPTGDDCRIRSGSK 61
           G + + ++WVI GI  R PL PIYTN     + KE+D    E+   TPT +D RI +   
Sbjct: 12  GLESEGKRWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLT 71

Query: 62  CPPAPKKRKSSMKFNHGNVRQFFKPPDLEVVFSRHVERAN 98
           CP AP+KRKSS+K N+  VR+FF PPDLE VF RHVERAN
Sbjct: 72  CPAAPRKRKSSLKCNYSGVREFFSPPDLESVFIRHVERAN 111

[Close]

BLAST of CmoCh04G018470 vs. TrEMBL
Match: A0A067JRX4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17805 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-20
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 2   GFQFDPRKWVITGIQSRPPLVPIYTNLIHKELDHCDTEDQPPTPTGDDCRIRSGSKCPPA 61
           G + D +KWVI GI  R PL  IYTN + KE +     D   TPT ++ RI +   CPPA
Sbjct: 12  GLELDCKKWVIAGIPLRAPLKKIYTNPVDKESE--SDHDCSTTPTSEESRISARLTCPPA 71

Query: 62  PKKRKSSMKFNHGNVRQFFKPPDLEVVFSRHVERAN 98
           PKKRK+++K N+  VR+FF PPDL+ VF RHVERAN
Sbjct: 72  PKKRKATLKCNYNGVREFFTPPDLDTVFIRHVERAN 105

[Close]

BLAST of CmoCh04G018470 vs. TrEMBL
Match: A0A0S3T387_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G094000 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 57/112 (50.89%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 1   MGFQFDP--------RKWVITGIQSRPPLVPIYTNLIHK------ELDHCDTEDQPPTPT 60
           MGF   P        RKWVI GI  R PL PIYT  + K      E D  D  D   TP 
Sbjct: 1   MGFSEKPQVEESDGTRKWVIAGISLRAPLKPIYTTTVEKKEEEEEEDDEGDVADSSTTPK 60

Query: 61  GDDCRIRSGSKCPPAPKKRKSSMKFNH-GNVRQFFKPPDLEVVFSRHVERAN 98
           G++ RI +  KCPPAP+KRK S+K N+    R+FF PPDLE VF RHVERAN
Sbjct: 61  GEEARIPTALKCPPAPRKRKPSLKCNYRSGAREFFTPPDLETVFIRHVERAN 112

[Close]

BLAST of CmoCh04G018470 vs. TrEMBL
Match: A0A0L9UB77_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g317600 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 57/112 (50.89%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 1   MGFQFDP--------RKWVITGIQSRPPLVPIYTNLIHK------ELDHCDTEDQPPTPT 60
           MGF   P        RKWVI GI  R PL PIYT  + K      E D  D  D   TP 
Sbjct: 1   MGFSEKPQVEESDGTRKWVIAGISLRAPLKPIYTTTVEKKEEEEEEDDEGDVADSSTTPK 60

Query: 61  GDDCRIRSGSKCPPAPKKRKSSMKFNH-GNVRQFFKPPDLEVVFSRHVERAN 98
           G++ RI +  KCPPAP+KRK S+K N+    R+FF PPDLE VF RHVERAN
Sbjct: 61  GEEARIPTALKCPPAPRKRKPSLKCNYRSGAREFFTPPDLETVFIRHVERAN 112

[Close]

BLAST of CmoCh04G018470 vs. TAIR10
Match: AT5G40460.1 (AT5G40460.1 unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-12
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1


Query: 2   GFQFDPRKWVITGIQSRPPLVPIYTNL------IHKELDHCDTEDQP--PTPTGDDCRIR 61
           G + D +KWVI GI  R  L P+ T L      + +  + C  E++    TPT  + +I 
Sbjct: 12  GLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECSTTPTAKETKIP 71

Query: 62  SGSKCPPAPKKRKSSMKFNHGNVRQFFKPP-DLEVVFSR 92
              +CPPAP+KR+ ++K     VR+FF PP DLE VF R
Sbjct: 72  ELLECPPAPRKRRPALKCRSNVVREFFTPPSDLETVFLR 110

[Close]

BLAST of CmoCh04G018470 vs. TAIR10
Match: AT1G60783.1 (AT1G60783.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 5.5e-12
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 8   RKWVITGIQSRPPLVPIYTNLIHKELDHCDTEDQ-PPTPTGDDCRIRSGSKCPPAPKKRK 67
           +K VITGI     + PI  +L    + + + ED  P TPT D  RI +   CPPAPKKRK
Sbjct: 22  KKCVITGISLHSTVKPI--SLSSSAVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRK 81

Query: 68  SSMKFNHGNVRQFFKPPDLEVVF 90
            ++K ++G  R+FF PPDLE VF
Sbjct: 82  LTLKVSYG-PREFFSPPDLETVF 101

[Close]

BLAST of CmoCh04G018470 vs. NCBI nr
Match: gi|659090731|ref|XP_008446170.1| (PREDICTED: uncharacterized protein LOC103488975 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 6.5e-39
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 1


Query: 1   MGFQFDPRKWVITGIQSRPPLVPIYTNLIHKELDHCDTEDQPPTPTGDDCRIRSGSKCPP 60
           MGF+FDP KWVITGIQ RPPL+      I+KE +HCD EDQPPTPTGD+CRIRSGSKCPP
Sbjct: 11  MGFEFDPEKWVITGIQLRPPLLLT----INKEHNHCDNEDQPPTPTGDECRIRSGSKCPP 70

Query: 61  APKKRKSSMKFNHGNVRQFFKPPDLEVVFSRHVERAN 98
           APKK KSS+KFNH N+RQFFKPPDLEVVFSRHVERAN
Sbjct: 71  APKKPKSSLKFNHSNMRQFFKPPDLEVVFSRHVERAN 103

[Close]

BLAST of CmoCh04G018470 vs. NCBI nr
Match: gi|700196589|gb|KGN51766.1| (hypothetical protein Csa_5G598740 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 4.1e-33
Identity = 69/88 (78.41%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 1  MGFQFDPRKWVITGIQSRPPLVPIYTNLIHKELDHCDTEDQPPTPTGDDCRIRSGSKCPP 60
          MGF+FDP KWVITGIQ RPPL+      I+KE  HCD EDQPPTPTGD+CRI SGSKCPP
Sbjct: 11 MGFEFDPEKWVITGIQLRPPLLLT----INKEHSHCDNEDQPPTPTGDECRILSGSKCPP 70

Query: 61 APKKRKSSMKFNHGNVRQFFKPPDLEVV 89
          APKK KSS+KFNHGNVRQFFKPPDLE+V
Sbjct: 71 APKKPKSSLKFNHGNVRQFFKPPDLELV 94

[Close]

BLAST of CmoCh04G018470 vs. NCBI nr
Match: gi|568860871|ref|XP_006483937.1| (PREDICTED: uncharacterized protein LOC102611595 [Citrus sinensis])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 53/100 (53.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 2   GFQFDPRKWVITGIQSRPPLVPIYTN----LIHKELDHCDTEDQPPTPTGDDCRIRSGSK 61
           G + + ++WVI GI  R PL PIYTN     + KE+D    E+   TPT +D RI +   
Sbjct: 12  GLESEGKRWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLT 71

Query: 62  CPPAPKKRKSSMKFNHGNVRQFFKPPDLEVVFSRHVERAN 98
           CP AP+KRKSS+K N+  VR+FF PPDLE VF RHVERAN
Sbjct: 72  CPAAPRKRKSSLKCNYSGVREFFSPPDLESVFIRHVERAN 111

[Close]

BLAST of CmoCh04G018470 vs. NCBI nr
Match: gi|802724853|ref|XP_012085871.1| (PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas])

HSP 1 Score: 105.1 bits (261), Expect = 6.8e-20
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 1


Query: 2   GFQFDPRKWVITGIQSRPPLVPIYTNLIHKELDHCDTEDQPPTPTGDDCRIRSGSKCPPA 61
           G + D +KWVI GI  R PL  IYTN + KE +     D   TPT ++ RI +   CPPA
Sbjct: 12  GLELDCKKWVIAGIPLRAPLKKIYTNPVDKESE--SDHDCSTTPTSEESRISARLTCPPA 71

Query: 62  PKKRKSSMKFNHGNVRQFFKPPDLEVVFSRHVERAN 98
           PKKRK+++K N+  VR+FF PPDL+ VF RHVERAN
Sbjct: 72  PKKRKATLKCNYNGVREFFTPPDLDTVFIRHVERAN 105

[Close]

BLAST of CmoCh04G018470 vs. NCBI nr
Match: gi|920696569|gb|KOM39794.1| (hypothetical protein LR48_Vigan03g317600 [Vigna angularis])

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 57/112 (50.89%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 1   MGFQFDP--------RKWVITGIQSRPPLVPIYTNLIHK------ELDHCDTEDQPPTPT 60
           MGF   P        RKWVI GI  R PL PIYT  + K      E D  D  D   TP 
Sbjct: 1   MGFSEKPQVEESDGTRKWVIAGISLRAPLKPIYTTTVEKKEEEEEEDDEGDVADSSTTPK 60

Query: 61  GDDCRIRSGSKCPPAPKKRKSSMKFNH-GNVRQFFKPPDLEVVFSRHVERAN 98
           G++ RI +  KCPPAP+KRK S+K N+    R+FF PPDLE VF RHVERAN
Sbjct: 61  GEEARIPTALKCPPAPRKRKPSLKCNYRSGAREFFTPPDLETVFIRHVERAN 112

The following BLAST results are available for this feature:

BLAST of CmoCh04G018470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G018470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVI5_CUCSA	2.9e-33	78.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598740 PE=4 SV=1	[more]
A0A067H3K0_CITSI	1.2e-20	53.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033782mg PE=4 SV=1	[more]
A0A067JRX4_JATCU	4.7e-20	53.13	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17805 PE=4 SV=1	[more]
A0A0S3T387_PHAAN	1.1e-19	50.89	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G094000 PE=...	[more]
A0A0L9UB77_PHAAN	1.1e-19	50.89	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g317600 PE=4 SV=1	[more]

BLAST of CmoCh04G018470 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40460.1	3.3e-12	39.39	unknown protein	[more]
AT1G60783.1	5.5e-12	46.99	unknown protein	[more]

BLAST of CmoCh04G018470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090731\|ref\|XP_008446170.1\|	6.5e-39	80.41	PREDICTED: uncharacterized protein LOC103488975 [Cucumis melo]	[more]
gi\|700196589\|gb\|KGN51766.1\|	4.1e-33	78.41	hypothetical protein Csa_5G598740 [Cucumis sativus]	[more]
gi\|568860871\|ref\|XP_006483937.1\|	1.8e-20	53.00	PREDICTED: uncharacterized protein LOC102611595 [Citrus sinensis]	[more]
gi\|802724853\|ref\|XP_012085871.1\|	6.8e-20	53.13	PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]	[more]
gi\|920696569\|gb\|KOM39794.1\|	1.5e-19	50.89	hypothetical protein LR48_Vigan03g317600 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G018470.1	CmoCh04G018470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 8..97 score: 3.8
None	No IPR available	PANTHER	PTHR33142:SF2	SUBFAMILY NOT NAMED	coord: 8..97 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G018470	Cucsa.286400	Cucumber (Gy14) v1	cgycmoB0794
CmoCh04G018470	CmaCh04G017560	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G018470	Csa5G598740	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G018470	MELO3C011958	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G018470	CSPI05G22350	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G018470	Lsi04G005830	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G018470	MELO3C011958.2	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G018470	CsaV3_5G031210	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G018470	Cla97C05G107880	Watermelon (97103) v2	cmowmbB730
CmoCh04G018470	Bhi07G001423	Wax gourd	cmowgoB0890
CmoCh04G018470	CsGy5G021820	Cucumber (Gy14) v2	cgybcmoB653

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G018470	Cucurbita moschata (Rifu)	cmocmoB341
CmoCh04G018470	Cucurbita moschata (Rifu)	cmocmoB472
CmoCh04G018470	Cucumber (Gy14) v1	cgycmoB1092
CmoCh04G018470	Cucurbita maxima (Rimu)	cmacmoB189
CmoCh04G018470	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G018470	Cucurbita maxima (Rimu)	cmacmoB785
CmoCh04G018470	Wild cucumber (PI 183967)	cmocpiB693
CmoCh04G018470	Cucumber (Chinese Long) v2	cmocuB682
CmoCh04G018470	Melon (DHL92) v3.5.1	cmomeB673
CmoCh04G018470	Watermelon (Charleston Gray)	cmowcgB655
CmoCh04G018470	Watermelon (Charleston Gray)	cmowcgB683
CmoCh04G018470	Watermelon (97103) v1	cmowmB666
CmoCh04G018470	Watermelon (97103) v1	cmowmB694
CmoCh04G018470	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G018470	Cucurbita pepo (Zucchini)	cmocpeB656
CmoCh04G018470	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G018470	Bottle gourd (USVL1VR-Ls)	cmolsiB698
CmoCh04G018470	Cucumber (Gy14) v2	cgybcmoB232
CmoCh04G018470	Melon (DHL92) v3.6.1	cmomedB761
CmoCh04G018470	Silver-seed gourd	carcmoB0343
CmoCh04G018470	Silver-seed gourd	carcmoB0685
CmoCh04G018470	Silver-seed gourd	carcmoB0858
CmoCh04G018470	Silver-seed gourd	carcmoB0985
CmoCh04G018470	Cucumber (Chinese Long) v3	cmocucB0808
CmoCh04G018470	Watermelon (97103) v2	cmowmbB763
CmoCh04G018470	Wax gourd	cmowgoB0861