CSPI05G14690 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G14690
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Structural constituent of ribosome, putative
Location	Chr5 : 15235055 .. 15235586 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCAAGAAGGTCCTGTCGCCTGTTTCTAGAGATTTCAATATCGATGATTACATAGGGATGGAAAGTTGTGTGGATTTGAAAGACCACCACAAGAGTACGGCGGAGATTTCGTCCACCAAGAGGTTAATGCAGATCGGAAACAAGAAAATGAAAGATGAGAAAGAGTATCCTCCGCCAATCCCATTGTTGGTGGTGATGAAACGGCAGTACACCGGCGACGGGAGGCTGATACTGACGGAAGAGAAAATTAAACACCGTGGGTTCTTGCGTGCACAGAGATCCGATGGGCGGCTGATGCTGCAGCTTGTGGCGGTGGAGGTGGGGGAGGAGCGGCGGAGAGATGCAGGGGGGTTTGTGTTGGGAGTGGCAGTGTGACCTAATGGAACCCTGAAGGCCGTTGGAGGCTAACCAAATGCGTCTCTTTCTAACGTTTGCTTAGGGGTGTTTTAGTTTTTAGACCTCAACTTCCTTTCTCCAATAAAATATTTAGCTTCAACTATATTATAAATATATAAACTTCTACCAA

mRNA sequence

ATGGAGAGCAAGAAGGTCCTGTCGCCTGTTTCTAGAGATTTCAATATCGATGATTACATAGGGATGGAAAGTTGTGTGGATTTGAAAGACCACCACAAGAGTACGGCGGAGATTTCGTCCACCAAGAGGTTAATGCAGATCGGAAACAAGAAAATGAAAGATGAGAAAGAGTATCCTCCGCCAATCCCATTGTTGGTGGTGATGAAACGGCAGTACACCGGCGACGGGAGGCTGATACTGACGGAAGAGAAAATTAAACACCGTGGGTTCTTGCGTGCACAGAGATCCGATGGGCGGCTGATGCTGCAGCTTGTGGCGGTGGAGGTGGGGGAGGAGCGGCGGAGAGATGCAGGGGGGTTTGTGTTGGGAGTGGCAGTGTGA

Coding sequence (CDS)

ATGGAGAGCAAGAAGGTCCTGTCGCCTGTTTCTAGAGATTTCAATATCGATGATTACATAGGGATGGAAAGTTGTGTGGATTTGAAAGACCACCACAAGAGTACGGCGGAGATTTCGTCCACCAAGAGGTTAATGCAGATCGGAAACAAGAAAATGAAAGATGAGAAAGAGTATCCTCCGCCAATCCCATTGTTGGTGGTGATGAAACGGCAGTACACCGGCGACGGGAGGCTGATACTGACGGAAGAGAAAATTAAACACCGTGGGTTCTTGCGTGCACAGAGATCCGATGGGCGGCTGATGCTGCAGCTTGTGGCGGTGGAGGTGGGGGAGGAGCGGCGGAGAGATGCAGGGGGGTTTGTGTTGGGAGTGGCAGTGTGA

Homology

[Close]

BLAST of CSPI05G14690 vs. TrEMBL
Match: A0A0A0KN42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409630 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.0e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MESKKVLSPVSRDFNIDDYIGMESCVDLKDHHKSTAEISSTKRLMQIGNKKMKDEKEYPP 60
           MESKKVLSPVSRDFNIDDYIGMESCVDLKDHHKSTAEISSTKRLMQIGNKKMKDEKEYPP
Sbjct: 1   MESKKVLSPVSRDFNIDDYIGMESCVDLKDHHKSTAEISSTKRLMQIGNKKMKDEKEYPP 60

Query: 61  PIPLLVVMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEVGEERRRDAGGF 120
           PIPLLVVMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEVGEERRRDAGGF
Sbjct: 61  PIPLLVVMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEVGEERRRDAGGF 120

Query: 121 VLGVAV 127
           VLGVAV
Sbjct: 121 VLGVAV 126

[Close]

BLAST of CSPI05G14690 vs. TrEMBL
Match: A0A0B2PAH8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_040015 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.4e-16
Identity = 53/119 (44.54%), Postives = 69/119 (57.98%), Query Frame = 1


Query: 6   VLSPVSRDFNIDDYIGMESCVDLK------DHHKSTAEISSTKRLMQIGNKKMKDEKEYP 65
           V+S ++   N DDYIG ESC DL+      D+H+S     +  +     N KMK+ K +P
Sbjct: 2   VMSSITFPPNSDDYIGTESCTDLQNIDHVIDNHQSFKSNDAGNKTKVKNNIKMKENKVFP 61

Query: 66  PPIPLLV-----------VMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAV 108
           PPIPLL            V+KR YT +GRLIL EEK+KH  + RA  ++GRL LQLV V
Sbjct: 62  PPIPLLARTQNLASHMPWVLKRYYTNEGRLILKEEKVKHHEYFRAHSANGRLTLQLVNV 120

[Close]

BLAST of CSPI05G14690 vs. TrEMBL
Match: I1MAQ1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G168100 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.4e-16
Identity = 53/119 (44.54%), Postives = 69/119 (57.98%), Query Frame = 1


Query: 6   VLSPVSRDFNIDDYIGMESCVDLK------DHHKSTAEISSTKRLMQIGNKKMKDEKEYP 65
           V+S ++   N DDYIG ESC DL+      D+H+S     +  +     N KMK+ K +P
Sbjct: 2   VMSSITFPPNSDDYIGTESCTDLQNIDHVIDNHQSFKSNDAGNKTKVKNNIKMKENKVFP 61

Query: 66  PPIPLLV-----------VMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAV 108
           PPIPLL            V+KR YT +GRLIL EEK+KH  + RA  ++GRL LQLV V
Sbjct: 62  PPIPLLARTQNLASHMPWVLKRYYTNEGRLILKEEKVKHHEYFRAHSANGRLTLQLVNV 120

[Close]

BLAST of CSPI05G14690 vs. TrEMBL
Match: B9RJE9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033430 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 16  IDDYIGMESCVDLKDHHKSTAEISSTKRLMQ-------------IGNKKMKDEKEYPPPI 75
           I DYIG+ESC+DLKD        S  K   Q                K+ K++KE+PPPI
Sbjct: 40  IGDYIGIESCLDLKDDDDMFISASEEKEGDQSFSVRLSRRDERWAAKKEKKEKKEFPPPI 99

Query: 76  PLLV-----------VMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVE 109
           PLL            V+KR YT DGRLIL EE+++H G+ RAQR +GRL LQLV ++
Sbjct: 100 PLLARTENLPCHMPWVLKRYYTSDGRLILKEERVRHHGYFRAQRCNGRLTLQLVPLD 156

[Close]

BLAST of CSPI05G14690 vs. TrEMBL
Match: M5XST0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019765mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 1


Query: 6   VLSPVSRDFNIDDYIGMESCVDLK------------DHHKSTAEISSTKRLMQIGNKKMK 65
           +LSP S      DYIGMES VD++            D  +     S   R   +G ++ K
Sbjct: 49  LLSPTSSSLLSGDYIGMESSVDVQKDCEKDQVVPNDDEEEEEEGQSGNFRQRLMGRREQK 108

Query: 66  ---DEKEYPPPIPLLV-----------VMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGR 109
                KE+PPPIPLL            V+KR YT DGRLILTEEK++H  + RA RS+GR
Sbjct: 109 WAMRNKEFPPPIPLLARTENLPSHMPWVLKRHYTSDGRLILTEEKVRHHEYFRAHRSNGR 168

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BLAST of CSPI05G14690 vs. TAIR10
Match: AT1G22110.1 (AT1G22110.1 structural constituent of ribosome)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 16  IDDYIGMESCVDL--KDHHKSTAEISS--TKRLMQIGNKKMKDE-------KEYPPPIPL 75
           + DYIG ESC D+   D       ++S   K   + G ++ ++        +E+PPPIPL
Sbjct: 49  VGDYIGTESCFDILSADEGNDVVSVASEPVKSRFRYGGRRREEREARAAAAREFPPPIPL 108

Query: 76  LV-----------VMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVE 109
           L            V+KR  T DGRLIL EEK++H  + RA RS+GRL L LV ++
Sbjct: 109 LAQTGNLLPHMPWVLKRVVTSDGRLILREEKVRHHEYFRANRSNGRLTLHLVPLD 163

[Close]

BLAST of CSPI05G14690 vs. TAIR10
Match: AT1G77932.1 (AT1G77932.1 Protein of unknown function (DUF3049))

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1


Query: 19  YIGMESCVDLKDHHKSTAEISSTKRLMQIGNKKMKDEKEYPPPIPLLV--VMKRQYTGDG 78
           YIG ESC +         ++   +R  +   K +  E   PP +P  V  V+KR+YT DG
Sbjct: 10  YIGKESCFNAFSDKTGDVKLPCERREEK---KTVAREIMSPPMLPSHVPSVLKREYTSDG 69

Query: 79  RLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEVGEERRRD 117
           RL+L EEK+    + RA RS+GRLM+QLV+++  ++R  D
Sbjct: 70  RLLLKEEKVCRNEYFRAHRSNGRLMIQLVSLDEDDDRDSD 106

[Close]

BLAST of CSPI05G14690 vs. TAIR10
Match: AT5G22390.1 (AT5G22390.1 Protein of unknown function (DUF3049))

HSP 1 Score: 50.8 bits (120), Expect = 7.0e-07
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1


Query: 51  KMKDEKEYPPPIPLLVVMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVE 109
           + K+ KEYPP +  +    + Y  +GRL+L E +I  R FLRA R DGRL L+LV  E
Sbjct: 128 RRKERKEYPPAMTRMSF--KTYRKEGRLVLEEVRIPRREFLRASREDGRLRLKLVQPE 183

[Close]

BLAST of CSPI05G14690 vs. NCBI nr
Match: gi|778708490|ref|XP_011656213.1| (PREDICTED: uncharacterized protein LOC105435672 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MESKKVLSPVSRDFNIDDYIGMESCVDLKDHHKSTAEISSTKRLMQIGNKKMKDEKEYPP 60
           MESKKVLSPVSRDFNIDDYIGMESCVDLKDHHKSTAEISSTKRLMQIGNKKMKDEKEYPP
Sbjct: 1   MESKKVLSPVSRDFNIDDYIGMESCVDLKDHHKSTAEISSTKRLMQIGNKKMKDEKEYPP 60

Query: 61  PIPLLVVMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEVGEERRRDAGGF 120
           PIPLLVVMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEVGEERRRDAGGF
Sbjct: 61  PIPLLVVMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEVGEERRRDAGGF 120

Query: 121 VLGVAV 127
           VLGVAV
Sbjct: 121 VLGVAV 126

[Close]

BLAST of CSPI05G14690 vs. NCBI nr
Match: gi|659121098|ref|XP_008460498.1| (PREDICTED: uncharacterized protein LOC103499298 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 1.0e-60
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 1


Query: 1   MESKKVLSPVSRDFNIDDYIGMESCVDLKDHHKSTAEISSTKRLMQIGNKKMKDEKEYPP 60
           MESKKVLSPVSRDFNIDDYIGMESCVDLK+HHKSTAEIS TKRLMQIGNKKMKDEKEYPP
Sbjct: 1   MESKKVLSPVSRDFNIDDYIGMESCVDLKNHHKSTAEISPTKRLMQIGNKKMKDEKEYPP 60

Query: 61  PIPLLVVMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEVGEERRRDAGGF 120
           PIPLLVVMKR YTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEV EER+RDAGGF
Sbjct: 61  PIPLLVVMKRHYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVEVAEERQRDAGGF 120

Query: 121 VLGVAV 127
           +LGVAV
Sbjct: 121 ILGVAV 126

[Close]

BLAST of CSPI05G14690 vs. NCBI nr
Match: gi|571510729|ref|XP_006596322.1| (PREDICTED: uncharacterized protein LOC102664674 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 7.8e-16
Identity = 53/119 (44.54%), Postives = 69/119 (57.98%), Query Frame = 1


Query: 6   VLSPVSRDFNIDDYIGMESCVDLK------DHHKSTAEISSTKRLMQIGNKKMKDEKEYP 65
           V+S ++   N DDYIG ESC DL+      D+H+S     +  +     N KMK+ K +P
Sbjct: 2   VMSSITFPPNSDDYIGTESCTDLQNIDHVIDNHQSFKSNDAGNKTKVKNNIKMKENKVFP 61

Query: 66  PPIPLLV-----------VMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAV 108
           PPIPLL            V+KR YT +GRLIL EEK+KH  + RA  ++GRL LQLV V
Sbjct: 62  PPIPLLARTQNLASHMPWVLKRYYTNEGRLILKEEKVKHHEYFRAHSANGRLTLQLVNV 120

[Close]

BLAST of CSPI05G14690 vs. NCBI nr
Match: gi|223546954|gb|EEF48451.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 16  IDDYIGMESCVDLKDHHKSTAEISSTKRLMQ-------------IGNKKMKDEKEYPPPI 75
           I DYIG+ESC+DLKD        S  K   Q                K+ K++KE+PPPI
Sbjct: 40  IGDYIGIESCLDLKDDDDMFISASEEKEGDQSFSVRLSRRDERWAAKKEKKEKKEFPPPI 99

Query: 76  PLLV-----------VMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVE 109
           PLL            V+KR YT DGRLIL EE+++H G+ RAQR +GRL LQLV ++
Sbjct: 100 PLLARTENLPCHMPWVLKRYYTSDGRLILKEERVRHHGYFRAQRCNGRLTLQLVPLD 156

[Close]

BLAST of CSPI05G14690 vs. NCBI nr
Match: gi|1000977366|ref|XP_002513868.2| (PREDICTED: uncharacterized protein LOC8263019 [Ricinus communis])

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 16  IDDYIGMESCVDLKDHHKSTAEISSTKRLMQ-------------IGNKKMKDEKEYPPPI 75
           I DYIG+ESC+DLKD        S  K   Q                K+ K++KE+PPPI
Sbjct: 40  IGDYIGIESCLDLKDDDDMFISASEEKEGDQSFSVRLSRRDERWAAKKEKKEKKEFPPPI 99

Query: 76  PLLV-----------VMKRQYTGDGRLILTEEKIKHRGFLRAQRSDGRLMLQLVAVE 109
           PLL            V+KR YT DGRLIL EE+++H G+ RAQR +GRL LQLV ++
Sbjct: 100 PLLARTENLPCHMPWVLKRYYTSDGRLILKEERVRHHGYFRAQRCNGRLTLQLVPLD 156

The following BLAST results are available for this feature:

BLAST of CSPI05G14690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G14690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN42_CUCSA	7.0e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G409630 PE=4 SV=1	[more]
A0A0B2PAH8_GLYSO	5.4e-16	44.54	Uncharacterized protein OS=Glycine soja GN=glysoja_040015 PE=4 SV=1	[more]
I1MAQ1_SOYBN	5.4e-16	44.54	Uncharacterized protein OS=Glycine max GN=GLYMA_14G168100 PE=4 SV=1	[more]
B9RJE9_RICCO	1.2e-15	44.44	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1033430 PE=4 SV=1	[more]
M5XST0_PRUPE	3.0e-14	41.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019765mg PE=4 SV=1	[more]

BLAST of CSPI05G14690 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22110.1	1.0e-13	38.26	structural constituent of ribosome	[more]
AT1G77932.1	1.2e-11	39.00	Protein of unknown function (DUF3049)	[more]
AT5G22390.1	7.0e-07	46.55	Protein of unknown function (DUF3049)	[more]

BLAST of CSPI05G14690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708490\|ref\|XP_011656213.1\|	1.0e-63	100.00	PREDICTED: uncharacterized protein LOC105435672 [Cucumis sativus]	[more]
gi\|659121098\|ref\|XP_008460498.1\|	1.0e-60	95.24	PREDICTED: uncharacterized protein LOC103499298 [Cucumis melo]	[more]
gi\|571510729\|ref\|XP_006596322.1\|	7.8e-16	44.54	PREDICTED: uncharacterized protein LOC102664674 [Glycine max]	[more]
gi\|223546954\|gb\|EEF48451.1\|	1.7e-15	44.44	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000977366\|ref\|XP_002513868.2\|	1.7e-15	44.44	PREDICTED: uncharacterized protein LOC8263019 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021410	FAF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G14690.1	CSPI05G14690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021410	The fantastic four family	PFAM	PF11250	FAF	coord: 57..104 score: 2.0
None	No IPR available	PANTHER	PTHR33155	FAMILY NOT NAMED	coord: 16..108 score: 3.4
None	No IPR available	PANTHER	PTHR33155:SF12	F2E2.18	coord: 16..108 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G14690	Cla019784	Watermelon (97103) v1	cpiwmB391
CSPI05G14690	Csa5G409630	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G14690	MELO3C022816	Melon (DHL92) v3.5.1	cpimeB343
CSPI05G14690	ClCG03G008910	Watermelon (Charleston Gray)	cpiwcgB401
CSPI05G14690	Lsi09G009530	Bottle gourd (USVL1VR-Ls)	cpilsiB330
CSPI05G14690	MELO3C022816.2	Melon (DHL92) v3.6.1	cpimedB332
CSPI05G14690	CsaV3_5G023810	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G14690	Cla97C03G060100	Watermelon (97103) v2	cpiwmbB389
CSPI05G14690	Bhi12G001095	Wax gourd	cpiwgoB455
CSPI05G14690	Cucsa.034610	Cucumber (Gy14) v1	cgycpiB007
CSPI05G14690	CmaCh15G007290	Cucurbita maxima (Rimu)	cmacpiB297
CSPI05G14690	CmoCh04G024150	Cucurbita moschata (Rifu)	cmocpiB749
CSPI05G14690	Cp4.1LG01g20160	Cucurbita pepo (Zucchini)	cpecpiB441
CSPI05G14690	Cp4.1LG13g05060	Cucurbita pepo (Zucchini)	cpecpiB188
CSPI05G14690	CsGy5G014610	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G14690	Carg01479	Silver-seed gourd	carcpiB0865
CSPI05G14690	Carg18252	Silver-seed gourd	carcpiB0562

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G14690	Cucurbita maxima (Rimu)	cmacpiB759
CSPI05G14690	Cucurbita moschata (Rifu)	cmocpiB289