CSPI04G26810 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G26810
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionMediator of RNA polymerase II transcription subunit 26
LocationChr4 : 23773823 .. 23774385 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTTTTTTGGTGGAATTACCCTAAAATGGAAAACAAGCAGAAGATAGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAATCCAAGAAGATAGAGCAAGAACCGCCGTACTATATTTCTCGGATGCAGCCATTGACAGAATGTGCTTACGGCGGAGGAATGTACGGCACCGACGATAAAGGAGATCAGGACAGCCTGCAGATCAAGAAAGTACCTGCGAGCACAACGCAGAGCGCCGATGGACCAGTTGTAGCGGAAATGAAGCTGAAGCATCCGCCTCCGCCGTCCTCAGGCGACAGAGACATCGATATCACCGGGCAATCGTATTTCCAGTAGCCTGAAAAGCTCGTGAAGGCTTCCCCGGTCCGGTTGCGTATTGTAAATGCGTTTTAATAATGGCGATCGAGAGGTGTAGTTTGTTTATTCGTGTAATTTGGTTCGTTTTCTTTACTCGATTAACGCGTTTCTTGTGGATCTATGAATGATTGAAACAGTTATTTCTAAGAGATTGAGTATACAACTTAACCTAAATTAATATGTAAAATTAGGAGAAAACGAATTCAT

mRNA sequence

ATGGAAAACAAGCAGAAGATAGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAATCCAAGAAGATAGAGCAAGAACCGCCGTACTATATTTCTCGGATGCAGCCATTGACAGAATGTGCTTACGGCGGAGGAATGTACGGCACCGACGATAAAGGAGATCAGGACAGCCTGCAGATCAAGAAAGTACCTGCGAGCACAACGCAGAGCGCCGATGGACCAGTTGTAGCGGAAATGAAGCTGAAGCATCCGCCTCCGCCGTCCTCAGGCGACAGAGACATCGATATCACCGGGCAATCGTATTTCCAGTAG

Coding sequence (CDS)

ATGGAAAACAAGCAGAAGATAGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAATCCAAGAAGATAGAGCAAGAACCGCCGTACTATATTTCTCGGATGCAGCCATTGACAGAATGTGCTTACGGCGGAGGAATGTACGGCACCGACGATAAAGGAGATCAGGACAGCCTGCAGATCAAGAAAGTACCTGCGAGCACAACGCAGAGCGCCGATGGACCAGTTGTAGCGGAAATGAAGCTGAAGCATCCGCCTCCGCCGTCCTCAGGCGACAGAGACATCGATATCACCGGGCAATCGTATTTCCAGTAG
Homology
[Close]
BLAST of CSPI04G26810 vs. TrEMBL
Match: A0A0A0L393_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658490 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60
           MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

[Close]
BLAST of CSPI04G26810 vs. TrEMBL
Match: W9R762_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024884 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-20
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 2   ENKQKIEMEREQQRREESK-KIE-QEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQI 61
           + ++K+E ERE Q REE+K K E  E P  IS M+P+T CAYGGGMYGT++ G  +    
Sbjct: 10  DQQKKVEAERESQIREETKHKAEAHEQPPNISPMEPVTRCAYGGGMYGTEE-GQPEEPPG 69

Query: 62  KKVPASTTQSADGPV-VAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
            K PAS TQSADGPV  AE + KH PPPS+GDRDIDITGQSY Q
Sbjct: 70  NKTPASETQSADGPVEFAETRPKHTPPPSTGDRDIDITGQSYIQ 112

[Close]
BLAST of CSPI04G26810 vs. TrEMBL
Match: W1NWB4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00366p00014600 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-18
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = 1 

Query: 9   MEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKG-DQDSLQIKKVPASTT 68
           M+RE+ + E+ K+ E++ P  +S M+P+TE AYGGG+YGTDD G  +  + +++ PAS T
Sbjct: 1   MDRER-KEEKGKREEEKKP--MSLMRPVTEGAYGGGLYGTDDGGAPKQQMPVQRQPASDT 60

Query: 69  QSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           QSADGPVV     KH PPPS+GDRD+DITGQSY Q
Sbjct: 61  QSADGPVVEPSVPKHEPPPSTGDRDLDITGQSYIQ 92

[Close]
BLAST of CSPI04G26810 vs. TrEMBL
Match: F6H0B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00140 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-17
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 9   MEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIKKVPASTTQ 68
           M+RE ++ E+  + +++PP  IS M+PLT  AYGGG+YG DD   + S ++ K PAS TQ
Sbjct: 1   MQRESEKMEKGAEKQKQPPN-ISPMEPLTHDAYGGGLYGADD---EPSRKLVKSPASNTQ 60

Query: 69  SADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           SADGP    ++ KH PPPS+GDRD DITGQSY Q
Sbjct: 61  SADGPEGPNIQPKHKPPPSTGDRDTDITGQSYIQ 90

[Close]
BLAST of CSPI04G26810 vs. TrEMBL
Match: A0A022PP97_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a026572mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-17
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1 

Query: 23  EQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIKKVPASTTQSADGPVVAEMKLKH 82
           ++  P YIS MQP+T+ AYGGGMYGT++   +      K+PAS TQSADGP  A  + KH
Sbjct: 5   QKHQPPYISAMQPVTKEAYGGGMYGTEE--GEAKQPAGKLPASATQSADGPDEATAEPKH 64

Query: 83  PPPPSSGDRDIDITGQSYFQ 103
            PPPS+GDRD+DITGQSY Q
Sbjct: 65  KPPPSTGDRDLDITGQSYIQ 82

[Close]
BLAST of CSPI04G26810 vs. TAIR10
Match: AT5G42290.1 (AT5G42290.1 transcription activator-related)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 1 

Query: 9   MEREQQRREESKKIEQEP----PYYISRMQPLTECAYGGGMYGTDDKGDQDSL------- 68
           ME+E ++  E  + + EP    P YIS+MQP+T  AYGGG+YG DD+ +  +L       
Sbjct: 1   MEKEPKQEPEEGRDKYEPHQHQPPYISQMQPVTHEAYGGGLYGQDDEKETTNLEKEAKNI 60

Query: 69  ----QIKKVPASTTQSADGP-VVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
               Q ++ PAS TQSADGP  V  +  KH  P SSGDRD+DITGQSY Q
Sbjct: 61  EKEPQQQRPPASDTQSADGPDEVKTLTPKHKQPASSGDRDVDITGQSYIQ 110

[Close]
BLAST of CSPI04G26810 vs. NCBI nr
Match: gi|778697864|ref|XP_011654420.1| (PREDICTED: uncharacterized protein LOC105435391 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60
           MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

[Close]
BLAST of CSPI04G26810 vs. NCBI nr
Match: gi|659104639|ref|XP_008452943.1| (PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 8.8e-42
Identity = 91/102 (89.22%), Postives = 97/102 (95.10%), Query Frame = 1 

Query: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60
           MENKQ+IEMEREQQRRE+SKKIEQEPPYYIS MQPLTE AYGGGMYGT++ GDQ+SLQ+K
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTEE-GDQESLQMK 60

Query: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           KVPAS TQSADGPV AEMKLKHPPPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASQTQSADGPVEAEMKLKHPPPPSSGDRDIDITGQSYFQ 101

[Close]
BLAST of CSPI04G26810 vs. NCBI nr
Match: gi|1009133717|ref|XP_015884054.1| (PREDICTED: uncharacterized protein LOC107419769 [Ziziphus jujuba])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 1 

Query: 2   ENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIKK 61
           E ++K+E +RE+Q RE+     Q+PP  IS M+P+T  AYGGGMYGTDDK D + ++  K
Sbjct: 6   EQQRKVEAKREKQIREDHADNHQDPPPNISPMEPITHGAYGGGMYGTDDKRD-EKIKPSK 65

Query: 62  VPASTTQSADGPV-VAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
            PAS TQSADGPV    + LKH PPPSSGDRDIDITGQSY Q
Sbjct: 66  PPASQTQSADGPVDSTTIHLKHKPPPSSGDRDIDITGQSYIQ 106

[Close]
BLAST of CSPI04G26810 vs. NCBI nr
Match: gi|698547174|ref|XP_009767948.1| (PREDICTED: uncharacterized protein LOC104219013 [Nicotiana sylvestris])

HSP 1 Score: 105.5 bits (262), Expect = 5.5e-20
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 1 

Query: 2   ENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQI-K 61
           ++ +K E ++E+  +EE  + E +PP Y+S MQPLT+ AYGGGMYG DD+G   + ++ K
Sbjct: 22  KSMEKEEQDQERDYKEEVSRREHQPP-YVSPMQPLTKEAYGGGMYGKDDEGGGPARKVDK 81

Query: 62  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
           K PAS TQSADGP  A ++ KH PP SSGDRDIDITGQSY Q
Sbjct: 82  KPPASETQSADGPAEATLQPKHKPPQSSGDRDIDITGQSYIQ 122

[Close]
BLAST of CSPI04G26810 vs. NCBI nr
Match: gi|703092281|ref|XP_010094588.1| (hypothetical protein L484_024884 [Morus notabilis])

HSP 1 Score: 105.5 bits (262), Expect = 5.5e-20
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 2   ENKQKIEMEREQQRREESK-KIE-QEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQI 61
           + ++K+E ERE Q REE+K K E  E P  IS M+P+T CAYGGGMYGT++ G  +    
Sbjct: 10  DQQKKVEAERESQIREETKHKAEAHEQPPNISPMEPVTRCAYGGGMYGTEE-GQPEEPPG 69

Query: 62  KKVPASTTQSADGPV-VAEMKLKHPPPPSSGDRDIDITGQSYFQ 103
            K PAS TQSADGPV  AE + KH PPPS+GDRDIDITGQSY Q
Sbjct: 70  NKTPASETQSADGPVEFAETRPKHTPPPSTGDRDIDITGQSYIQ 112

The following BLAST results are available for this feature:
BLAST of CSPI04G26810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G26810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L393_CUCSA1.0e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658490 PE=4 SV=1[more]
W9R762_9ROSA3.9e-2060.58Uncharacterized protein OS=Morus notabilis GN=L484_024884 PE=4 SV=1[more]
W1NWB4_AMBTC3.6e-1855.79Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00366p00014600 PE=4 SV=... [more]
F6H0B3_VITVI2.3e-1754.26Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00140 PE=4 SV=... [more]
A0A022PP97_ERYGU6.8e-1758.75Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a026572mg... [more]
BLAST of CSPI04G26810 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G42290.11.2e-1748.18 transcription activator-related[more]
BLAST of CSPI04G26810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697864|ref|XP_011654420.1|1.5e-49100.00PREDICTED: uncharacterized protein LOC105435391 [Cucumis sativus][more]
gi|659104639|ref|XP_008452943.1|8.8e-4289.22PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo][more]
gi|1009133717|ref|XP_015884054.1|1.0e-2160.78PREDICTED: uncharacterized protein LOC107419769 [Ziziphus jujuba][more]
gi|698547174|ref|XP_009767948.1|5.5e-2056.86PREDICTED: uncharacterized protein LOC104219013 [Nicotiana sylvestris][more]
gi|703092281|ref|XP_010094588.1|5.5e-2060.58hypothetical protein L484_024884 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G26810.1CSPI04G26810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G26810Cla023438Watermelon (97103) v1cpiwmB357
CSPI04G26810Csa4G658490Cucumber (Chinese Long) v2cpicuB181
CSPI04G26810MELO3C017014Melon (DHL92) v3.5.1cpimeB311
CSPI04G26810ClCG11G018630Watermelon (Charleston Gray)cpiwcgB290
CSPI04G26810Lsi04G017960Bottle gourd (USVL1VR-Ls)cpilsiB284
CSPI04G26810MELO3C017014.2Melon (DHL92) v3.6.1cpimedB302
CSPI04G26810CsaV3_4G037160Cucumber (Chinese Long) v3cpicucB212
CSPI04G26810Cla97C11G224740Watermelon (97103) v2cpiwmbB287
CSPI04G26810Bhi09G002412Wax gourdcpiwgoB421
CSPI04G26810Cucsa.272020Cucumber (Gy14) v1cgycpiB409
CSPI04G26810CmaCh09G000630Cucurbita maxima (Rimu)cmacpiB025
CSPI04G26810CmoCh09G000640Cucurbita moschata (Rifu)cmocpiB016
CSPI04G26810Cp4.1LG06g00280Cucurbita pepo (Zucchini)cpecpiB789
CSPI04G26810CsGy4G025140Cucumber (Gy14) v2cgybcpiB169
CSPI04G26810Carg08638Silver-seed gourdcarcpiB0118
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G26810Cucurbita pepo (Zucchini)cpecpiB573
CSPI04G26810Bottle gourd (USVL1VR-Ls)cpilsiB320
CSPI04G26810Melon (DHL92) v3.6.1cpimedB281
CSPI04G26810Silver-seed gourdcarcpiB0393
CSPI04G26810Cucumber (Chinese Long) v3cpicucB245
CSPI04G26810Watermelon (97103) v2cpiwmbB343
CSPI04G26810Wild cucumber (PI 183967)cpicpiB166
CSPI04G26810Cucurbita maxima (Rimu)cmacpiB188
CSPI04G26810Cucurbita maxima (Rimu)cmacpiB467
CSPI04G26810Cucurbita maxima (Rimu)cmacpiB811
CSPI04G26810Cucurbita moschata (Rifu)cmocpiB456
CSPI04G26810Cucurbita moschata (Rifu)cmocpiB796
CSPI04G26810Cucumber (Chinese Long) v2cpicuB204
CSPI04G26810Melon (DHL92) v3.5.1cpimeB286
CSPI04G26810Watermelon (97103) v1cpiwmB304