Carg08638 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08638
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription activator-like protein
Location	Cucurbita_argyrosperma_scaffold_057 : 276102 .. 276401 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTAACCAGAAGGTGGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAAACGAAGAAGCTAGAGCAAGAACCACCGCACTATATATCCCCGATGCAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCACCGAGGAAGGCCAACAGCAAAGCCTACAGAAGAAGCCCGCGAGCGACACACAGAGTGCCGACGGGCCTGTAGAATCGGGAATGAAGCCGAAGCACGCGCCCCCGCCATCCTCTGGCGATAGAGACATCGACATCACTGGGCAATCGTATTTCCAGTAG

mRNA sequence

ATGGAGACTAACCAGAAGGTGGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAAACGAAGAAGCTAGAGCAAGAACCACCGCACTATATATCCCCGATGCAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCACCGAGGAAGGCCAACAGCAAAGCCTACAGAAGAAGCCCGCGAGCGACACACAGAGTGCCGACGGGCCTGTAGAATCGGGAATGAAGCCGAAGCACGCGCCCCCGCCATCCTCTGGCGATAGAGACATCGACATCACTGGGCAATCGTATTTCCAGTAG

Coding sequence (CDS)

ATGGAGACTAACCAGAAGGTGGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAAACGAAGAAGCTAGAGCAAGAACCACCGCACTATATATCCCCGATGCAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCACCGAGGAAGGCCAACAGCAAAGCCTACAGAAGAAGCCCGCGAGCGACACACAGAGTGCCGACGGGCCTGTAGAATCGGGAATGAAGCCGAAGCACGCGCCCCCGCCATCCTCTGGCGATAGAGACATCGACATCACTGGGCAATCGTATTTCCAGTAG

Protein sequence

METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSLQKKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ

Homology

[Close]

BLAST of Carg08638 vs. NCBI nr
Match: XP_022936823.1 (uncharacterized protein LOC111443294 [Cucurbita moschata] >XP_022976625.1 uncharacterized protein LOC111476971 [Cucurbita maxima] >XP_023535795.1 uncharacterized protein LOC111797123 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.0 bits (484), Expect = 1.9e-45
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSLQKKP 60
           METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYG EEGQQQSLQKKP
Sbjct: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKP 60

Query: 61  ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61  ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 99

[Close]

BLAST of Carg08638 vs. NCBI nr
Match: XP_008452943.1 (PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 7.4e-34
Identity = 81/101 (80.20%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSLQKK- 60
           ME  Q++EMEREQQRRE++KK+EQEPP+YISPMQPLTESAYGGGMYGTEEG Q+SLQ K 
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTEEGDQESLQMKK 60

Query: 61  -PASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            PAS TQSADGPVE+ MK KH P  SSGDRDIDITGQSYFQ
Sbjct: 61  VPASQTQSADGPVEAEMKLKHPPXXSSGDRDIDITGQSYFQ 101

[Close]

BLAST of Carg08638 vs. NCBI nr
Match: XP_022132786.1 (uncharacterized protein LOC111005558 [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 75/99 (75.76%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSLQKKP 60
           ME NQK+EMER                  ISPMQPLTESAYGGGMYG EEGQQQ L+KKP
Sbjct: 1   MERNQKIEMERXXXXXXXXXXXXXXXXXXISPMQPLTESAYGGGMYGAEEGQQQLLKKKP 60

Query: 61  ASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           ASDTQSADGPVE+GMKPKHAPPPSSGDRDIDITGQSYFQ
Sbjct: 61  ASDTQSADGPVEAGMKPKHAPPPSSGDRDIDITGQSYFQ 99

[Close]

BLAST of Carg08638 vs. NCBI nr
Match: XP_011654420.1 (PREDICTED: uncharacterized protein LOC105435391 [Cucumis sativus] >KGN55489.1 hypothetical protein Csa_4G658490 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 5.7e-26
Identity = 73/102 (71.57%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTEE-GQQQSLQ-- 60
           ME  QK+EMEREQ         EQEPP+YIS MQPLTE AYGGGMYGT++ G Q SLQ  
Sbjct: 1   MENKQKIEMEREQXXXXXXXXXEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           K PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

[Close]

BLAST of Carg08638 vs. NCBI nr
Match: KZV20090.1 (Mediator of RNA polymerase II transcription subunit 26 [Dorcoceras hygrometricum])

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 60/94 (63.83%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 7   VEMEREQQRREETK-KLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSLQKKPASDTQ 66
           +E ER QQ R+ET+ + +Q  P YISP+QPLT++AYGGGMYGTEEGQ +   K PAS+TQ
Sbjct: 1   MEKERTQQERDETEVEQKQHQPPYISPLQPLTKNAYGGGMYGTEEGQSKDPMKPPASETQ 60

Query: 67  SADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           SADGP E+  +PKH PPPS+GD+++DITGQSY Q
Sbjct: 61  SADGPAEATAQPKHKPPPSTGDKNLDITGQSYIQ 94

[Close]

BLAST of Carg08638 vs. TAIR10
Match: AT5G42290.1 (transcription activator-related)

HSP 1 Score: 82.0 bits (201), Expect = 2.2e-16
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 7   VEMEREQQRREETKKLE--QEPPHYISPMQPLTESAYGGGMYGTEEGQQQS--------- 66
           +E E +Q+  E   K E  Q  P YIS MQP+T  AYGGG+YG ++ ++ +         
Sbjct: 1   MEKEPKQEPEEGRDKYEPHQHQPPYISQMQPVTHEAYGGGLYGQDDEKETTNLXXXXXXX 60

Query: 67  -----LQKKPASDTQSADGPVE-SGMKPKHAPPPSSGDRDIDITGQSYFQ 100
                 Q+ PASDTQSADGP E   + PKH  P SSGDRD+DITGQSY Q
Sbjct: 61  XXXXQQQRPPASDTQSADGPDEVKTLTPKHKQPASSGDRDVDITGQSYIQ 110

[Close]

BLAST of Carg08638 vs. TrEMBL
Match: tr|A0A1S3BV26|A0A1S3BV26_CUCME (uncharacterized protein LOC103493802 OS=Cucumis melo OX=3656 GN=LOC103493802 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.9e-34
Identity = 81/101 (80.20%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSLQKK- 60
           ME  Q++EMEREQQRRE++KK+EQEPP+YISPMQPLTESAYGGGMYGTEEG Q+SLQ K 
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTEEGDQESLQMKK 60

Query: 61  -PASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            PAS TQSADGPVE+ MK KH P  SSGDRDIDITGQSYFQ
Sbjct: 61  VPASQTQSADGPVEAEMKLKHPPXXSSGDRDIDITGQSYFQ 101

[Close]

BLAST of Carg08638 vs. TrEMBL
Match: tr|A0A0A0L393|A0A0A0L393_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G658490 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.7e-26
Identity = 73/102 (71.57%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGTEE-GQQQSLQ-- 60
           ME  QK+EMEREQ         EQEPP+YIS MQPLTE AYGGGMYGT++ G Q SLQ  
Sbjct: 1   MENKQKIEMEREQXXXXXXXXXEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           K PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

[Close]

BLAST of Carg08638 vs. TrEMBL
Match: tr|A0A1U7YXQ5|A0A1U7YXQ5_NELNU (uncharacterized protein LOC104587101 OS=Nelumbo nucifera OX=4432 GN=LOC104587101 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-23
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 16  REETKKLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSLQKKPASDTQSADGPVESGM 75
           +E+  + + +PP+ ISPM+P+TE AYGGG+YGTEEGQ +   K PASDTQSADGPV++G+
Sbjct: 32  QEDDAQKQHQPPN-ISPMKPVTEGAYGGGLYGTEEGQPEKPTKPPASDTQSADGPVDTGI 91

Query: 76  KPKHAPPPSSGDRDIDITGQSYFQ 100
           KPKH PPPS+GDRD+DITGQSY Q
Sbjct: 92  KPKHKPPPSTGDRDVDITGQSYIQ 114

[Close]

BLAST of Carg08638 vs. TrEMBL
Match: tr|W9R762|W9R762_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024884 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21
Identity = 66/104 (63.46%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 2   ETNQKVEMEREQQRREETK---KLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSL-- 61
           +  +KVE ERE Q REETK   +  ++PP+ ISPM+P+T  AYGGGMYGTEEGQ +    
Sbjct: 10  DQQKKVEAERESQIREETKHKAEAHEQPPN-ISPMEPVTRCAYGGGMYGTEEGQPEEPPG 69

Query: 62  QKKPASDTQSADGPVE-SGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            K PAS+TQSADGPVE +  +PKH PPPS+GDRDIDITGQSY Q
Sbjct: 70  NKTPASETQSADGPVEFAETRPKHTPPPSTGDRDIDITGQSYIQ 112

[Close]

BLAST of Carg08638 vs. TrEMBL
Match: tr|A0A2R6R047|A0A2R6R047_ACTCH (Proline-, glutamic acid-and leucine-rich protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12716 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.1e-21
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   METNQKV-EMEREQQRRE---ETKKLEQEPPHYISPMQPLTESAYGGGMYGTEEGQQQSL 60
           M+  Q + EME++ +R E   +T + + +PP+ ISPM+PLT  AYGGGMYGTE GQ +  
Sbjct: 1   MDQKQSIREMEKKLEREEDVQDTIQRQHQPPN-ISPMEPLTRGAYGGGMYGTEAGQPEKP 60

Query: 61  QKKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            K PAS+TQSADGP E  + PKH PPPSSGDRD+DITGQSY Q
Sbjct: 61  TKPPASETQSADGPTEPDVPPKHRPPPSSGDRDVDITGQSYIQ 102

The following BLAST results are available for this feature:

BLAST of Carg08638 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936823.1	1.9e-45	98.99	uncharacterized protein LOC111443294 [Cucurbita moschata] >XP_022976625.1 unchar...	[more]
XP_008452943.1	7.4e-34	80.20	PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo]	[more]
XP_022132786.1	1.1e-29	75.76	uncharacterized protein LOC111005558 [Momordica charantia]	[more]
XP_011654420.1	5.7e-26	71.57	PREDICTED: uncharacterized protein LOC105435391 [Cucumis sativus] >KGN55489.1 hy...	[more]
KZV20090.1	2.6e-23	63.83	Mediator of RNA polymerase II transcription subunit 26 [Dorcoceras hygrometricum...	[more]

BLAST of Carg08638 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42290.1	2.2e-16	48.18	transcription activator-related	[more]

BLAST of Carg08638 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08638 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BV26\|A0A1S3BV26_CUCME	4.9e-34	80.20	uncharacterized protein LOC103493802 OS=Cucumis melo OX=3656 GN=LOC103493802 PE=...	[more]
tr\|A0A0A0L393\|A0A0A0L393_CUCSA	3.7e-26	71.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G658490 PE=4 SV=1	[more]
tr\|A0A1U7YXQ5\|A0A1U7YXQ5_NELNU	3.0e-23	66.67	uncharacterized protein LOC104587101 OS=Nelumbo nucifera OX=4432 GN=LOC104587101...	[more]
tr\|W9R762\|W9R762_9ROSA	1.2e-21	63.46	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024884 PE=4 SV=1	[more]
tr\|A0A2R6R047\|A0A2R6R047_ACTCH	8.1e-21	59.22	Proline-, glutamic acid-and leucine-rich protein OS=Actinidia chinensis var. chi...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08638-RA	Carg08638-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08638	Cla023438	Watermelon (97103) v1	carwmB0104
Carg08638	Csa4G658490	Cucumber (Chinese Long) v2	carcuB0113
Carg08638	MELO3C017014	Melon (DHL92) v3.5.1	carmeB0107
Carg08638	ClCG11G018630	Watermelon (Charleston Gray)	carwcgB0102
Carg08638	CSPI04G26810	Wild cucumber (PI 183967)	carcpiB0118
Carg08638	Cucsa.272020	Cucumber (Gy14) v1	carcgyB0125
Carg08638	CmaCh09G000630	Cucurbita maxima (Rimu)	carcmaB0134
Carg08638	CmoCh09G000640	Cucurbita moschata (Rifu)	carcmoB0144
Carg08638	Lsi04G017960	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08638	Cp4.1LG06g00280	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08638	CsGy4G025140	Cucumber (Gy14) v2	carcgybB0113
Carg08638	MELO3C017014.2	Melon (DHL92) v3.6.1	carmedB0109
Carg08638	CsaV3_4G037160	Cucumber (Chinese Long) v3	carcucB0122
Carg08638	Cla97C11G224740	Watermelon (97103) v2	carwmbB0106
Carg08638	Bhi09G002412	Wax gourd	carwgoB0119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08638	Silver-seed gourd	carcarB120
Carg08638	Silver-seed gourd	carcarB122
Carg08638	Cucurbita maxima (Rimu)	carcmaB0136
Carg08638	Cucurbita moschata (Rifu)	carcmoB0146
Carg08638	Cucurbita pepo (Zucchini)	carcpeB0153