CmoCh09G000640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G000640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription activator-like protein
Location	Cmo_Chr09 : 290024 .. 290323 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTAACCAGAAGGTGGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAAACGAAGAAGCTAGAGCAAGAACCACCGCACTATATATCCCCGATGCAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCGCCGAGGAAGGCCAACAGCAAAGCCTACAGAAGAAGCCCGCGAGCGACACACAGAGTGCCGACGGGCCTGTAGAATCGGGAATGAAGCCGAAGCACGCGCCCCCGCCATCCTCTGGCGATAGAGACATCGACATCACTGGGCAATCGTATTTCCAGTAG

mRNA sequence

ATGGAGACTAACCAGAAGGTGGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAAACGAAGAAGCTAGAGCAAGAACCACCGCACTATATATCCCCGATGCAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCGCCGAGGAAGGCCAACAGCAAAGCCTACAGAAGAAGCCCGCGAGCGACACACAGAGTGCCGACGGGCCTGTAGAATCGGGAATGAAGCCGAAGCACGCGCCCCCGCCATCCTCTGGCGATAGAGACATCGACATCACTGGGCAATCGTATTTCCAGTAG

Coding sequence (CDS)

ATGGAGACTAACCAGAAGGTGGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAAACGAAGAAGCTAGAGCAAGAACCACCGCACTATATATCCCCGATGCAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGCGCCGAGGAAGGCCAACAGCAAAGCCTACAGAAGAAGCCCGCGAGCGACACACAGAGTGCCGACGGGCCTGTAGAATCGGGAATGAAGCCGAAGCACGCGCCCCCGCCATCCTCTGGCGATAGAGACATCGACATCACTGGGCAATCGTATTTCCAGTAG

Homology

[Close]

BLAST of CmoCh09G000640 vs. TrEMBL
Match: A0A0A0L393_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658490 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-31
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEE-GQQQSLQ-- 60
           ME  QK+EMEREQQRREE+KK+EQEPP+YIS MQPLTE AYGGGMYG ++ G Q SLQ  
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           K PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

[Close]

BLAST of CmoCh09G000640 vs. TrEMBL
Match: W9R762_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024884 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-21
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1


Query: 2   ETNQKVEMEREQQRREETK---KLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSL-- 61
           +  +KVE ERE Q REETK   +  ++PP+ ISPM+P+T  AYGGGMYG EEGQ +    
Sbjct: 10  DQQKKVEAERESQIREETKHKAEAHEQPPN-ISPMEPVTRCAYGGGMYGTEEGQPEEPPG 69

Query: 62  QKKPASDTQSADGPVE-SGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            K PAS+TQSADGPVE +  +PKH PPPS+GDRDIDITGQSY Q
Sbjct: 70  NKTPASETQSADGPVEFAETRPKHTPPPSTGDRDIDITGQSYIQ 112

[Close]

BLAST of CmoCh09G000640 vs. TrEMBL
Match: F6H0B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00140 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-19
Identity = 52/91 (57.14%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 9   MEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQSAD 68
           M+RE ++ E+  + +++PP+ ISPM+PLT  AYGGG+YGA++   + L K PAS+TQSAD
Sbjct: 1   MQRESEKMEKGAEKQKQPPN-ISPMEPLTHDAYGGGLYGADDEPSRKLVKSPASNTQSAD 60

Query: 69  GPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           GP    ++PKH PPPS+GDRD DITGQSY Q
Sbjct: 61  GPEGPNIQPKHKPPPSTGDRDTDITGQSYIQ 90

[Close]

BLAST of CmoCh09G000640 vs. TrEMBL
Match: B9R8L1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600690 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-19
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 7   VEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQS 66
           +E +RE+Q RE T     +PP  ++ M+P+T  AYGGGMYG+E  + Q   KKPASDTQS
Sbjct: 1   METDREKQEREGTLN---QPPQ-LTAMKPVTHDAYGGGMYGSEADEPQKQSKKPASDTQS 60

Query: 67  ADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           ADGP E   +PKH PPPS+GDRD+DITGQSY Q
Sbjct: 61  ADGPAEKTTEPKHKPPPSTGDRDLDITGQSYIQ 89

[Close]

BLAST of CmoCh09G000640 vs. TrEMBL
Match: A0A0D2Q4J3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118600 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.1e-19
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 14  QRREET---KKLEQ----EPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQS 73
           +R+ ET   K  EQ    +PPH ISPM P+T +AYGGG+YG ++GQ +  +  PAS+TQS
Sbjct: 2   ERKSETGGGKGKEQSESHQPPH-ISPMYPVTHNAYGGGLYGTDQGQAKKPENPPASETQS 61

Query: 74  ADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           ADGP E+  +PKH PPPSSGDRDIDITGQSY Q
Sbjct: 62  ADGPNEAKNEPKHKPPPSSGDRDIDITGQSYIQ 93

[Close]

BLAST of CmoCh09G000640 vs. TAIR10
Match: AT5G42290.1 (AT5G42290.1 transcription activator-related)

HSP 1 Score: 82.0 bits (201), Expect = 2.2e-16
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 7   VEMEREQQRREETKKLE--QEPPHYISPMQPLTESAYGGGMYGAEEGQQQS--------- 66
           +E E +Q+  E   K E  Q  P YIS MQP+T  AYGGG+YG ++ ++ +         
Sbjct: 1   MEKEPKQEPEEGRDKYEPHQHQPPYISQMQPVTHEAYGGGLYGQDDEKETTNLEKEAKNI 60

Query: 67  -----LQKKPASDTQSADGPVE-SGMKPKHAPPPSSGDRDIDITGQSYFQ 100
                 Q+ PASDTQSADGP E   + PKH  P SSGDRD+DITGQSY Q
Sbjct: 61  EKEPQQQRPPASDTQSADGPDEVKTLTPKHKQPASSGDRDVDITGQSYIQ 110

[Close]

BLAST of CmoCh09G000640 vs. NCBI nr
Match: gi|659104639|ref|XP_008452943.1| (PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 1


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKK- 60
           ME  Q++EMEREQQRRE++KK+EQEPP+YISPMQPLTESAYGGGMYG EEG Q+SLQ K 
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTEEGDQESLQMKK 60

Query: 61  -PASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            PAS TQSADGPVE+ MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  VPASQTQSADGPVEAEMKLKHPPPPSSGDRDIDITGQSYFQ 101

[Close]

BLAST of CmoCh09G000640 vs. NCBI nr
Match: gi|778697864|ref|XP_011654420.1| (PREDICTED: uncharacterized protein LOC105435391 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.9e-31
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEE-GQQQSLQ-- 60
           ME  QK+EMEREQQRREE+KK+EQEPP+YIS MQPLTE AYGGGMYG ++ G Q SLQ  
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           K PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

[Close]

BLAST of CmoCh09G000640 vs. NCBI nr
Match: gi|720083313|ref|XP_010242857.1| (PREDICTED: uncharacterized protein LOC104587101 [Nelumbo nucifera])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 10  EREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQSADG 69
           +R  +  +E    +Q  P  ISPM+P+TE AYGGG+YG EEGQ +   K PASDTQSADG
Sbjct: 25  KRSMEPYQEDDAQKQHQPPNISPMKPVTEGAYGGGLYGTEEGQPEKPTKPPASDTQSADG 84

Query: 70  PVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           PV++G+KPKH PPPS+GDRD+DITGQSY Q
Sbjct: 85  PVDTGIKPKHKPPPSTGDRDVDITGQSYIQ 114

[Close]

BLAST of CmoCh09G000640 vs. NCBI nr
Match: gi|747046733|ref|XP_011101060.1| (PREDICTED: uncharacterized protein LOC105179155 [Sesamum indicum])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 9   MEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQSAD 68
           ME+  ++  +    EQ  P +ISPMQPLT  AYGGGMY AEEGQ +  +K PAS TQSAD
Sbjct: 1   MEKANKQETQDAAREQHQPPHISPMQPLTRDAYGGGMYAAEEGQLKEQEKPPASATQSAD 60

Query: 69  GPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           GP E+ ++PKH PPPS+GDRD+DITGQSY Q
Sbjct: 61  GPAEATIQPKHTPPPSTGDRDLDITGQSYIQ 91

[Close]

BLAST of CmoCh09G000640 vs. NCBI nr
Match: gi|703092281|ref|XP_010094588.1| (hypothetical protein L484_024884 [Morus notabilis])

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-21
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1


Query: 2   ETNQKVEMEREQQRREETK---KLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSL-- 61
           +  +KVE ERE Q REETK   +  ++PP+ ISPM+P+T  AYGGGMYG EEGQ +    
Sbjct: 10  DQQKKVEAERESQIREETKHKAEAHEQPPN-ISPMEPVTRCAYGGGMYGTEEGQPEEPPG 69

Query: 62  QKKPASDTQSADGPVE-SGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            K PAS+TQSADGPVE +  +PKH PPPS+GDRDIDITGQSY Q
Sbjct: 70  NKTPASETQSADGPVEFAETRPKHTPPPSTGDRDIDITGQSYIQ 112

The following BLAST results are available for this feature:

BLAST of CmoCh09G000640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G000640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L393_CUCSA	2.7e-31	77.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658490 PE=4 SV=1	[more]
W9R762_9ROSA	2.6e-21	62.50	Uncharacterized protein OS=Morus notabilis GN=L484_024884 PE=4 SV=1	[more]
F6H0B3_VITVI	2.4e-19	57.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00140 PE=4 SV=...	[more]
B9R8L1_RICCO	3.1e-19	59.14	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600690 PE=4 SV=1	[more]
A0A0D2Q4J3_GOSRA	9.1e-19	60.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118600 PE=4 SV=1	[more]

BLAST of CmoCh09G000640 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42290.1	2.2e-16	48.18	transcription activator-related	[more]

BLAST of CmoCh09G000640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104639\|ref\|XP_008452943.1\|	2.0e-35	81.19	PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo]	[more]
gi\|778697864\|ref\|XP_011654420.1\|	3.9e-31	77.45	PREDICTED: uncharacterized protein LOC105435391 [Cucumis sativus]	[more]
gi\|720083313\|ref\|XP_010242857.1\|	4.4e-22	62.22	PREDICTED: uncharacterized protein LOC104587101 [Nelumbo nucifera]	[more]
gi\|747046733\|ref\|XP_011101060.1\|	1.7e-21	61.54	PREDICTED: uncharacterized protein LOC105179155 [Sesamum indicum]	[more]
gi\|703092281\|ref\|XP_010094588.1\|	3.7e-21	62.50	hypothetical protein L484_024884 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G000640.1	CmoCh09G000640.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G000640	Cucsa.272020	Cucumber (Gy14) v1	cgycmoB0742
CmoCh09G000640	CmaCh09G000630	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G000640	Cla023438	Watermelon (97103) v1	cmowmB031
CmoCh09G000640	Csa4G658490	Cucumber (Chinese Long) v2	cmocuB015
CmoCh09G000640	MELO3C017014	Melon (DHL92) v3.5.1	cmomeB026
CmoCh09G000640	ClCG11G018630	Watermelon (Charleston Gray)	cmowcgB010
CmoCh09G000640	CSPI04G26810	Wild cucumber (PI 183967)	cmocpiB016
CmoCh09G000640	Lsi04G017960	Bottle gourd (USVL1VR-Ls)	cmolsiB012
CmoCh09G000640	Cp4.1LG06g00280	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G000640	MELO3C017014.2	Melon (DHL92) v3.6.1	cmomedB026
CmoCh09G000640	CsaV3_4G037160	Cucumber (Chinese Long) v3	cmocucB0020
CmoCh09G000640	Cla97C11G224740	Watermelon (97103) v2	cmowmbB010
CmoCh09G000640	Bhi09G002412	Wax gourd	cmowgoB0023
CmoCh09G000640	CsGy4G025140	Cucumber (Gy14) v2	cgybcmoB438
CmoCh09G000640	Carg08638	Silver-seed gourd	carcmoB0144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G000640	Cucurbita pepo (Zucchini)	cmocpeB020
CmoCh09G000640	Silver-seed gourd	carcmoB0484
CmoCh09G000640	Cucurbita maxima (Rimu)	cmacmoB435
CmoCh09G000640	Cucurbita moschata (Rifu)	cmocmoB017