CmaCh09G000630 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G000630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transcription activator-like protein
Location	Cma_Chr09 : 282949 .. 283248 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTAACCAGAAGGTGGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAAACGAAGAAGCTAGAGCAAGAACCACCGCACTATATATCCCCGATGCAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGTGCCGAGGAAGGCCAACAGCAAAGCCTACAGAAGAAGCCCGCGAGCGACACACAGAGTGCCGACGGGCCTGTAGAATCGGGAATGAAGCCGAAGCACGCGCCCCCGCCATCCTCTGGCGACAGAGACATCGACATCACCGGGCAATCGTATTTCCAGTAG

mRNA sequence

ATGGAGACTAACCAGAAGGTGGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAAACGAAGAAGCTAGAGCAAGAACCACCGCACTATATATCCCCGATGCAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGTGCCGAGGAAGGCCAACAGCAAAGCCTACAGAAGAAGCCCGCGAGCGACACACAGAGTGCCGACGGGCCTGTAGAATCGGGAATGAAGCCGAAGCACGCGCCCCCGCCATCCTCTGGCGACAGAGACATCGACATCACCGGGCAATCGTATTTCCAGTAG

Coding sequence (CDS)

ATGGAGACTAACCAGAAGGTGGAGATGGAGAGGGAGCAGCAGAGGCGAGAAGAAACGAAGAAGCTAGAGCAAGAACCACCGCACTATATATCCCCGATGCAGCCATTGACGGAAAGTGCTTACGGCGGAGGAATGTACGGTGCCGAGGAAGGCCAACAGCAAAGCCTACAGAAGAAGCCCGCGAGCGACACACAGAGTGCCGACGGGCCTGTAGAATCGGGAATGAAGCCGAAGCACGCGCCCCCGCCATCCTCTGGCGACAGAGACATCGACATCACCGGGCAATCGTATTTCCAGTAG

Protein sequence

METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ

Homology

[Close]

BLAST of CmaCh09G000630 vs. TrEMBL
Match: A0A0A0L393_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658490 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-31
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEE-GQQQSLQ-- 60
           ME  QK+EMEREQQRREE+KK+EQEPP+YIS MQPLTE AYGGGMYG ++ G Q SLQ  
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           K PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

[Close]

BLAST of CmaCh09G000630 vs. TrEMBL
Match: W9R762_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024884 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-21
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1


Query: 2   ETNQKVEMEREQQRREETK---KLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSL-- 61
           +  +KVE ERE Q REETK   +  ++PP+ ISPM+P+T  AYGGGMYG EEGQ +    
Sbjct: 10  DQQKKVEAERESQIREETKHKAEAHEQPPN-ISPMEPVTRCAYGGGMYGTEEGQPEEPPG 69

Query: 62  QKKPASDTQSADGPVE-SGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            K PAS+TQSADGPVE +  +PKH PPPS+GDRDIDITGQSY Q
Sbjct: 70  NKTPASETQSADGPVEFAETRPKHTPPPSTGDRDIDITGQSYIQ 112

[Close]

BLAST of CmaCh09G000630 vs. TrEMBL
Match: F6H0B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00140 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-19
Identity = 52/91 (57.14%), Postives = 70/91 (76.92%), Query Frame = 1


Query: 9   MEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQSAD 68
           M+RE ++ E+  + +++PP+ ISPM+PLT  AYGGG+YGA++   + L K PAS+TQSAD
Sbjct: 1   MQRESEKMEKGAEKQKQPPN-ISPMEPLTHDAYGGGLYGADDEPSRKLVKSPASNTQSAD 60

Query: 69  GPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           GP    ++PKH PPPS+GDRD DITGQSY Q
Sbjct: 61  GPEGPNIQPKHKPPPSTGDRDTDITGQSYIQ 90

[Close]

BLAST of CmaCh09G000630 vs. TrEMBL
Match: B9R8L1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600690 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-19
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 7   VEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQS 66
           +E +RE+Q RE T     +PP  ++ M+P+T  AYGGGMYG+E  + Q   KKPASDTQS
Sbjct: 1   METDREKQEREGTLN---QPPQ-LTAMKPVTHDAYGGGMYGSEADEPQKQSKKPASDTQS 60

Query: 67  ADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           ADGP E   +PKH PPPS+GDRD+DITGQSY Q
Sbjct: 61  ADGPAEKTTEPKHKPPPSTGDRDLDITGQSYIQ 89

[Close]

BLAST of CmaCh09G000630 vs. TrEMBL
Match: A0A0D2Q4J3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118600 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.1e-19
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1


Query: 14  QRREET---KKLEQ----EPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQS 73
           +R+ ET   K  EQ    +PPH ISPM P+T +AYGGG+YG ++GQ +  +  PAS+TQS
Sbjct: 2   ERKSETGGGKGKEQSESHQPPH-ISPMYPVTHNAYGGGLYGTDQGQAKKPENPPASETQS 61

Query: 74  ADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           ADGP E+  +PKH PPPSSGDRDIDITGQSY Q
Sbjct: 62  ADGPNEAKNEPKHKPPPSSGDRDIDITGQSYIQ 93

[Close]

BLAST of CmaCh09G000630 vs. TAIR10
Match: AT5G42290.1 (AT5G42290.1 transcription activator-related)

HSP 1 Score: 82.0 bits (201), Expect = 2.2e-16
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 1


Query: 7   VEMEREQQRREETKKLE--QEPPHYISPMQPLTESAYGGGMYGAEEGQQQS--------- 66
           +E E +Q+  E   K E  Q  P YIS MQP+T  AYGGG+YG ++ ++ +         
Sbjct: 1   MEKEPKQEPEEGRDKYEPHQHQPPYISQMQPVTHEAYGGGLYGQDDEKETTNLEKEAKNI 60

Query: 67  -----LQKKPASDTQSADGPVE-SGMKPKHAPPPSSGDRDIDITGQSYFQ 100
                 Q+ PASDTQSADGP E   + PKH  P SSGDRD+DITGQSY Q
Sbjct: 61  EKEPQQQRPPASDTQSADGPDEVKTLTPKHKQPASSGDRDVDITGQSYIQ 110

[Close]

BLAST of CmaCh09G000630 vs. NCBI nr
Match: gi|659104639|ref|XP_008452943.1| (PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 1


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKK- 60
           ME  Q++EMEREQQRRE++KK+EQEPP+YISPMQPLTESAYGGGMYG EEG Q+SLQ K 
Sbjct: 1   MENKQRIEMEREQQRREQSKKIEQEPPYYISPMQPLTESAYGGGMYGTEEGDQESLQMKK 60

Query: 61  -PASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            PAS TQSADGPVE+ MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  VPASQTQSADGPVEAEMKLKHPPPPSSGDRDIDITGQSYFQ 101

[Close]

BLAST of CmaCh09G000630 vs. NCBI nr
Match: gi|778697864|ref|XP_011654420.1| (PREDICTED: uncharacterized protein LOC105435391 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.9e-31
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   METNQKVEMEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEE-GQQQSLQ-- 60
           ME  QK+EMEREQQRREE+KK+EQEPP+YIS MQPLTE AYGGGMYG ++ G Q SLQ  
Sbjct: 1   MENKQKIEMEREQQRREESKKIEQEPPYYISRMQPLTECAYGGGMYGTDDKGDQDSLQIK 60

Query: 61  KKPASDTQSADGPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           K PAS TQSADGPV + MK KH PPPSSGDRDIDITGQSYFQ
Sbjct: 61  KVPASTTQSADGPVVAEMKLKHPPPPSSGDRDIDITGQSYFQ 102

[Close]

BLAST of CmaCh09G000630 vs. NCBI nr
Match: gi|720083313|ref|XP_010242857.1| (PREDICTED: uncharacterized protein LOC104587101 [Nelumbo nucifera])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 10  EREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQSADG 69
           +R  +  +E    +Q  P  ISPM+P+TE AYGGG+YG EEGQ +   K PASDTQSADG
Sbjct: 25  KRSMEPYQEDDAQKQHQPPNISPMKPVTEGAYGGGLYGTEEGQPEKPTKPPASDTQSADG 84

Query: 70  PVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           PV++G+KPKH PPPS+GDRD+DITGQSY Q
Sbjct: 85  PVDTGIKPKHKPPPSTGDRDVDITGQSYIQ 114

[Close]

BLAST of CmaCh09G000630 vs. NCBI nr
Match: gi|747046733|ref|XP_011101060.1| (PREDICTED: uncharacterized protein LOC105179155 [Sesamum indicum])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 9   MEREQQRREETKKLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSLQKKPASDTQSAD 68
           ME+  ++  +    EQ  P +ISPMQPLT  AYGGGMY AEEGQ +  +K PAS TQSAD
Sbjct: 1   MEKANKQETQDAAREQHQPPHISPMQPLTRDAYGGGMYAAEEGQLKEQEKPPASATQSAD 60

Query: 69  GPVESGMKPKHAPPPSSGDRDIDITGQSYFQ 100
           GP E+ ++PKH PPPS+GDRD+DITGQSY Q
Sbjct: 61  GPAEATIQPKHTPPPSTGDRDLDITGQSYIQ 91

[Close]

BLAST of CmaCh09G000630 vs. NCBI nr
Match: gi|703092281|ref|XP_010094588.1| (hypothetical protein L484_024884 [Morus notabilis])

HSP 1 Score: 109.4 bits (272), Expect = 3.7e-21
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1


Query: 2   ETNQKVEMEREQQRREETK---KLEQEPPHYISPMQPLTESAYGGGMYGAEEGQQQSL-- 61
           +  +KVE ERE Q REETK   +  ++PP+ ISPM+P+T  AYGGGMYG EEGQ +    
Sbjct: 10  DQQKKVEAERESQIREETKHKAEAHEQPPN-ISPMEPVTRCAYGGGMYGTEEGQPEEPPG 69

Query: 62  QKKPASDTQSADGPVE-SGMKPKHAPPPSSGDRDIDITGQSYFQ 100
            K PAS+TQSADGPVE +  +PKH PPPS+GDRDIDITGQSY Q
Sbjct: 70  NKTPASETQSADGPVEFAETRPKHTPPPSTGDRDIDITGQSYIQ 112

The following BLAST results are available for this feature:

BLAST of CmaCh09G000630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G000630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L393_CUCSA	2.7e-31	77.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G658490 PE=4 SV=1	[more]
W9R762_9ROSA	2.6e-21	62.50	Uncharacterized protein OS=Morus notabilis GN=L484_024884 PE=4 SV=1	[more]
F6H0B3_VITVI	2.4e-19	57.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00140 PE=4 SV=...	[more]
B9R8L1_RICCO	3.1e-19	59.14	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600690 PE=4 SV=1	[more]
A0A0D2Q4J3_GOSRA	9.1e-19	60.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G118600 PE=4 SV=1	[more]

BLAST of CmaCh09G000630 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42290.1	2.2e-16	48.18	transcription activator-related	[more]

BLAST of CmaCh09G000630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104639\|ref\|XP_008452943.1\|	2.0e-35	81.19	PREDICTED: uncharacterized protein LOC103493802 [Cucumis melo]	[more]
gi\|778697864\|ref\|XP_011654420.1\|	3.9e-31	77.45	PREDICTED: uncharacterized protein LOC105435391 [Cucumis sativus]	[more]
gi\|720083313\|ref\|XP_010242857.1\|	4.4e-22	62.22	PREDICTED: uncharacterized protein LOC104587101 [Nelumbo nucifera]	[more]
gi\|747046733\|ref\|XP_011101060.1\|	1.7e-21	61.54	PREDICTED: uncharacterized protein LOC105179155 [Sesamum indicum]	[more]
gi\|703092281\|ref\|XP_010094588.1\|	3.7e-21	62.50	hypothetical protein L484_024884 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G000630.1	CmaCh09G000630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G000630	Cucsa.272020	Cucumber (Gy14) v1	cgycmaB0751
CmaCh09G000630	Cla023438	Watermelon (97103) v1	cmawmB039
CmaCh09G000630	Csa4G658490	Cucumber (Chinese Long) v2	cmacuB024
CmaCh09G000630	MELO3C017014	Melon (DHL92) v3.5.1	cmameB037
CmaCh09G000630	ClCG11G018630	Watermelon (Charleston Gray)	cmawcgB017
CmaCh09G000630	CSPI04G26810	Wild cucumber (PI 183967)	cmacpiB025
CmaCh09G000630	CmoCh09G000640	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G000630	Lsi04G017960	Bottle gourd (USVL1VR-Ls)	cmalsiB024
CmaCh09G000630	Cp4.1LG06g00280	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G000630	MELO3C017014.2	Melon (DHL92) v3.6.1	cmamedB036
CmaCh09G000630	CsaV3_4G037160	Cucumber (Chinese Long) v3	cmacucB0031
CmaCh09G000630	Cla97C11G224740	Watermelon (97103) v2	cmawmbB022
CmaCh09G000630	Bhi09G002412	Wax gourd	cmawgoB0029
CmaCh09G000630	CsGy4G025140	Cucumber (Gy14) v2	cgybcmaB469
CmaCh09G000630	Carg08638	Silver-seed gourd	carcmaB0134

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G000630	Silver-seed gourd	carcmaB0501
CmaCh09G000630	Cucurbita maxima (Rimu)	cmacmaB051
CmaCh09G000630	Cucurbita moschata (Rifu)	cmacmoB047
CmaCh09G000630	Cucurbita pepo (Zucchini)	cmacpeB045