CSPI03G22050 (gene) Wild cucumber (PI 183967)

NameCSPI03G22050
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionArabinogalactan peptide-like protein
LocationChr3 : 18474391 .. 18475680 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGCCAAAAATAGTGAAGAAACTTTGCCAGCAAAGGATTGAGTTCCAGCACAATCAACTTAACAGTCTGTCTATCCAGCACAGCAAAAGCATAAAAAATAAGGAATCTTTACAAAGAGAGAATGCAAAATCACATGGGTTTGCTTGGATTCCCAAAGCTTACAGTTCAAACATAAACAGTATTAAATCCCCAATTCCTCCATTTCCATTCTTCTCATTCATAATCTTCAAATTTCTTCTTCTTCTGTCTCTCTCTAGGGTTCTTCTGAGAGAGACAGAGATGGCTGTTTTGAGGGCTTCTTGTTTTGGAATATATGCTGCTCTGCTTATTGCTGTCTTTTATGTTGTTGCGTTGCCTCTATCTTCAGCTCAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAGCTCCAACTAGTGATGGTTAGTTCTCTGTTCTTGGTTTTCTACTTTTTCTGTTTGTTTCTCGAGAAATTTTGTGGGAAAAAGATACAAAATCCAGAAAATGGGTTTCAAATTTAATTGGAAATAGGGATTGGGGAATTTGGATGGGATCCTTGTTTGAAAAAGAAACAAAATTTACCACTTTTCTCCCTCTAGAAGCTGCTATTTCTTTTTTTTTTTTTTTCTGTTGATTTCTTGAGAAATTTGCTGGGGGGAATGGGAGAGGAATATGAGAATGGCTTTGAAATTAAAACTCTCATCTTCATATCTACAAAGTTGAATCTCCTTAAATAATAAAATGGCCTCTGCTATTTTGAAGAAAAGAGTTCATTTCAAAGGCAAATTTGAGTTGCTGGAATTAGATGGGAACAGCAGAACTAACCTGAAAAAGAAGAACTTTTGTTGGTCTTTCACAGCCAACCACTAAGATTGGAATACAAAATCAACATTTTTCATCTTTCTGTCTTACCATTTTAGAACTTCTATTTTATTTCTTTAAAGAAAGGTTGCTCCGGTAGAACCCCAAAAATAACAATTGGGATTTGATATGTTGCAGGAACCGCAATAGACCAAGGAATAGCATACGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGAAAAAACAGAAGAACAATTACTATGAATTTCATTATTTTCAAGTCTGTGAGAGATGAAAGGAAAGAGGGTGTGGGGTTGTGTTATTCTATATATTTGCCATTTTTTCTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTGAAGCTTGGCAAAGGTTTCATTTGTAGAAAGTGATCTGTTGTATTTTGTATTATAATTTATTTATATATTTTTCATTCTTTT

mRNA sequence

ATGGCTGTTTTGAGGGCTTCTTGTTTTGGAATATATGCTGCTCTGCTTATTGCTGTCTTTTATGTTGTTGCGTTGCCTCTATCTTCAGCTCAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAGCTCCAACTAGTGATGGAACCGCAATAGACCAAGGAATAGCATACGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGA

Coding sequence (CDS)

ATGGCTGTTTTGAGGGCTTCTTGTTTTGGAATATATGCTGCTCTGCTTATTGCTGTCTTTTATGTTGTTGCGTTGCCTCTATCTTCAGCTCAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAGCTCCAACTAGTGATGGAACCGCAATAGACCAAGGAATAGCATACGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGA
BLAST of CSPI03G22050 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-09
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1

Query: 16 LIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVLTYIIH 71
          ++AVF ++++ L     S SS +PAPAPTSDGT+IDQGIAYVLM+VAL LTY IH
Sbjct: 10 ILAVFVIISVILLPIAQSHSS-SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of CSPI03G22050 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-09
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1

Query: 16 LIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVLTYIIH 71
          L +  + V L L+ AQ    S APAPAPTSDGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 12 LFSFVFAVILSLAGAQ----SLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of CSPI03G22050 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-08
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1

Query: 6  ASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVL 65
          AS   +    L A  + V  P + AQ    S APAP+PTSDGT+IDQGIAY+LM+VALVL
Sbjct: 2  ASRNSVAVIALFAFVFAVISPFAGAQ----SLAPAPSPTSDGTSIDQGIAYLLMVVALVL 61

Query: 66 TYIIH 71
          TY+IH
Sbjct: 62 TYLIH 62

BLAST of CSPI03G22050 vs. TrEMBL
Match: A0A0A0L7T5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355060 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.5e-26
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60
          MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML
Sbjct: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTYIIH
Sbjct: 61 VALVLTYIIH 70

BLAST of CSPI03G22050 vs. TrEMBL
Match: A0A061G4Z7_THECC (Arabinogalactan protein 22 OS=Theobroma cacao GN=TCM_016399 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.3e-10
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60
          MAV R S   ++ AL   VF ++ALP   A + + S APAPAPTSDGT+IDQGIAYVLML
Sbjct: 1  MAVSRVSLAAVFVAL---VFAMIALP---AAVQAQSSAPAPAPTSDGTSIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTY+IH
Sbjct: 61 VALVLTYLIH 64

BLAST of CSPI03G22050 vs. TrEMBL
Match: A0A0D2U9F1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G252400 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-10
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60
          MAV + S   ++A L   VF +VALP   A + + S APAPAPTSDGT+IDQGIAYVLML
Sbjct: 1  MAVSKVSFVAVFAGL---VFTLVALP---AAVQAQSSAPAPAPTSDGTSIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTY+IH
Sbjct: 61 VALVLTYLIH 64

BLAST of CSPI03G22050 vs. TrEMBL
Match: B9RIM3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1580600 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 1

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60
          MAV R S FG++A   IA  Y + LPL+  Q      APAP+PTSDGT+IDQGIAYVLML
Sbjct: 1  MAVSRIS-FGLFAT--IATIYAIMLPLAHGQ------APAPSPTSDGTSIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTY+IH
Sbjct: 61 VALVLTYLIH 61

BLAST of CSPI03G22050 vs. TrEMBL
Match: A9PBL3_POPTR (Arabinogalactan-protein OS=Populus trichocarpa GN=POPTR_0014s09050g PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-09
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1

Query: 17 IAVFYVVALPLS--SAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVLTYIIH 71
          IAV  VV+L L+  S  + + SPAPAPAPTSDGT+IDQGIAY+LMLVALVLTY+IH
Sbjct: 11 IAVLAVVSLILAVVSPSVEAQSPAPAPAPTSDGTSIDQGIAYLLMLVALVLTYLIH 66

BLAST of CSPI03G22050 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 67.4 bits (163), Expect = 4.1e-12
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1

Query: 9  FGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVLTYI 68
          FG+  + ++++ + + LP++ AQ    S APAPAPTSDGT IDQGIAYVLMLVALVLTY+
Sbjct: 8  FGV--STIVSIIFAILLPMAHAQ----SAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYL 63

Query: 69 IH 71
          IH
Sbjct: 68 IH 63

BLAST of CSPI03G22050 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-10
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1

Query: 16 LIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVLTYIIH 71
          ++AVF ++++ L     S SS +PAPAPTSDGT+IDQGIAYVLM+VAL LTY IH
Sbjct: 10 ILAVFVIISVILLPIAQSHSS-SPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of CSPI03G22050 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1

Query: 16 LIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVLTYIIH 71
          L +  + V L L+ AQ    S APAPAPTSDGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 12 LFSFVFAVILSLAGAQ----SLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of CSPI03G22050 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-09
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1

Query: 6  ASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVL 65
          AS   +    L A  + V  P + AQ    S APAP+PTSDGT+IDQGIAY+LM+VALVL
Sbjct: 2  ASRNSVAVIALFAFVFAVISPFAGAQ----SLAPAPSPTSDGTSIDQGIAYLLMVVALVL 61

Query: 66 TYIIH 71
          TY+IH
Sbjct: 62 TYLIH 62

BLAST of CSPI03G22050 vs. NCBI nr
Match: gi|700202730|gb|KGN57863.1| (hypothetical protein Csa_3G355060 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 7.9e-26
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60
          MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML
Sbjct: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTYIIH
Sbjct: 61 VALVLTYIIH 70

BLAST of CSPI03G22050 vs. NCBI nr
Match: gi|659130864|ref|XP_008465391.1| (PREDICTED: arabinogalactan peptide 22 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 6.5e-20
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 1

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60
          MAVLRASCFGIYAA+LIAVFYV+AL +SSA+LSSS   PAPAPTSDGT IDQGIAYVLML
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALSVSSAELSSS---PAPAPTSDGTTIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTYIIH
Sbjct: 61 VALVLTYIIH 67

BLAST of CSPI03G22050 vs. NCBI nr
Match: gi|645258212|ref|XP_008234783.1| (PREDICTED: arabinogalactan peptide 20-like [Prunus mume])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-11
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 1

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60
          MAV+ AS FG+ A +L+  F+ V LP++ A  +  +PAPAPAPTSDGTAIDQG+AYVLM+
Sbjct: 1  MAVINASSFGVVAIVLL--FFAVVLPMAHA--TRVAPAPAPAPTSDGTAIDQGVAYVLMV 60

Query: 61 VALVLTYIIH 71
          +ALVLTY+IH
Sbjct: 61 LALVLTYLIH 66

BLAST of CSPI03G22050 vs. NCBI nr
Match: gi|694321811|ref|XP_009352058.1| (PREDICTED: arabinogalactan peptide 20-like [Pyrus x bretschneideri])

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-10
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60
          MA + +  FG+ A  +IAV Y V LP++ A   + +PAPAPA TSDGTAIDQGIAY LML
Sbjct: 1  MAAMNSLSFGVVA--IIAVLYAVVLPMAHATRLAPAPAPAPALTSDGTAIDQGIAYGLML 60

Query: 61 VALVLTYIIH 71
          +ALVLTY+IH
Sbjct: 61 LALVLTYLIH 68

BLAST of CSPI03G22050 vs. NCBI nr
Match: gi|590678914|ref|XP_007040434.1| (Arabinogalactan protein 22 [Theobroma cacao])

HSP 1 Score: 71.6 bits (174), Expect = 6.1e-10
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60
          MAV R S   ++ AL   VF ++ALP   A + + S APAPAPTSDGT+IDQGIAYVLML
Sbjct: 1  MAVSRVSLAAVFVAL---VFAMIALP---AAVQAQSSAPAPAPTSDGTSIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTY+IH
Sbjct: 61 VALVLTYLIH 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGP22_ARATH5.2e-0963.64Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1[more]
AGP16_ARATH6.7e-0965.45Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1[more]
AGP20_ARATH2.6e-0856.92Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L7T5_CUCSA5.5e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355060 PE=4 SV=1[more]
A0A061G4Z7_THECC4.3e-1064.29Arabinogalactan protein 22 OS=Theobroma cacao GN=TCM_016399 PE=4 SV=1[more]
A0A0D2U9F1_GOSRA7.3e-1064.29Uncharacterized protein OS=Gossypium raimondii GN=B456_008G252400 PE=4 SV=1[more]
B9RIM3_RICCO1.6e-0964.29Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1580600 PE=4 SV=1[more]
A9PBL3_POPTR4.7e-0971.43Arabinogalactan-protein OS=Populus trichocarpa GN=POPTR_0014s09050g PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT5G24105.14.1e-1261.29 arabinogalactan protein 41[more]
AT5G53250.12.9e-1063.64 arabinogalactan protein 22[more]
AT2G46330.13.8e-1065.45 arabinogalactan protein 16[more]
AT3G61640.11.4e-0956.92 arabinogalactan protein 20[more]
Match NameE-valueIdentityDescription
gi|700202730|gb|KGN57863.1|7.9e-26100.00hypothetical protein Csa_3G355060 [Cucumis sativus][more]
gi|659130864|ref|XP_008465391.1|6.5e-2087.14PREDICTED: arabinogalactan peptide 22 [Cucumis melo][more]
gi|645258212|ref|XP_008234783.1|3.2e-1162.86PREDICTED: arabinogalactan peptide 20-like [Prunus mume][more]
gi|694321811|ref|XP_009352058.1|3.6e-1061.43PREDICTED: arabinogalactan peptide 20-like [Pyrus x bretschneideri][more]
gi|590678914|ref|XP_007040434.1|6.1e-1064.29Arabinogalactan protein 22 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G22050.1CSPI03G22050.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan peptide, AGPPFAMPF06376DUF1070coord: 37..70
score: 1.8
NoneNo IPR availablePANTHERPTHR33374FAMILY NOT NAMEDcoord: 1..70
score: 4.6