CsGy3G021250 (gene) Cucumber (Gy14) v2

NameCsGy3G021250
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionarabinogalactan peptide 22
LocationChr3 : 19172968 .. 19174802 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGATTGTTTGAAGACAGTCATAAAACAGCCACAAGATTGGTGTAAAGGGTTCCAGCACAAAAGAAAAAAGAAGCCAAAAATAGTGAAGAAACTTTGCCAGCAAAGGATTGAGTTCCAGCACAATCAACTTAACAGTCTGTCTATCCAGCACAGCAAAAGCATAAAAAATAAGGAATCTTTACAAAGAGAGAATGCAAAATCACATGGGTTTGCTTGGATTCCCAAAGCTTACAGTTCAAACATAAACAGTATTAAATCCCCAATTCCTCCATTTCCATTCTTCTCATTCATAATCTTCAAATTTCTTCTTCTTCTGTCTCTCTCTAGGGTTCTTCTGAGAGAGACAGAGATGGCTGTTTTGAGGGCTTCTTGTTTTGGAATATATGCTGCTCTGCTTATTGCTGTCTTTTATGTTGTTGCGTTGCCTCTATCTTCAGCTCAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAGCTCCAACTAGTGATGGTTAGTTCTCTGTTCTTGGTTTTCTACTTTTTCTGTTTGTTTCTCGAGAAATTTTGTGGGAAAAAGATACAAAATCCAGAAAATGGGTTTCAAATTTAATTGGAAATAGGGATTGGGGAATTTGGATGGGATCCTTGTTTGAAAAAGAAACAAAATTTACCACTTTTCTCCCTCTAGAAGCTGCTATTTCTTTTTTTTTTTTTTTCTGTTGATTTCTTGAGAAATTTGCTGGGGGGAATGGGAGAGGAATATGAGAATGGCTTTGAAATTAAAACTCTCATCTTCATATCTACAAAGTTGAATCTCCTTAAATAATAAAATGGCCTCTGCTATTTTGAAGAAAAGAGTTCATTTCAAAGGCAAATTTGAGTTGCTGGAATTAGATGGGAACAGCAGAACTAACCTGAAAAAGAAGAACTTTTGTTGGTCTTTCACAGCCAACCACTAAGATTGGAATACAAAATCAACATTTTTCATCTTTCTGTCTTACCATTTTAGAACTTCTATTTTATTTCTTTAAAGAAAGGTTGCTCCGGTAGAACCCCAAAAATAACAATTGGGATTTGATATGTTGCAGGAACCGCAATAGACCAAGGAATAGCATACGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGAAAAAACAGAAGAACAATTACTATGAATTTCATTATTTTCAAGTCTGTGAGAGATGAAAGGAAAGAGGGTGTGGGGTTGTGTTATTCTATATATTTGCCATTTTTTCTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTGAAGCTTGGCAAAGGTTTCATTTGTAGAAAGTGATCTGTTGTATTTTGTATTATAATTTATTTATATATTTTTCATTCTTTTTTCTTGAATGTTCATTATTTTCCTTTCTGTACGTGTTCTTATTCTCCTAAACACACCCCCACCACAAGAAATTTACACCTCATTCATATTTCTATAAAGCTATATGTAAAACATCTGCAAGAAGAAACAAACCAACTTAAGTCGATCCGTTTCGTTCAGGATTCCAAAATTGTTCTAAAAGAACAAAATAAATAACACATTTTCATCCCTAATACATATTCCGAACAGAGTAATCTAAAATAACTTACTCTGCACTCAAGAAAAAACAAAATCATAGCATCTTTTCCTTTTCAATAATAAAACAAGTAAAAAGAAAAAAGAAAAACTAGATAGAAGCTAAGTCATATATATAGTAATTCATGTAGGAGCTAGTATAAAAAGCAAGTTTCAAAAACTTTATAGATTTATTTAATACAAATTTATGTAACATCATTAAGACTACTAAATCTATACTTTTATTCCTCCTTTTTAATGAAT

mRNA sequence

CGATTGTTTGAAGACAGTCATAAAACAGCCACAAGATTGGTGTAAAGGGTTCCAGCACAAAAGAAAAAAGAAGCCAAAAATAGTGAAGAAACTTTGCCAGCAAAGGATTGAGTTCCAGCACAATCAACTTAACAGTCTGTCTATCCAGCACAGCAAAAGCATAAAAAATAAGGAATCTTTACAAAGAGAGAATGCAAAATCACATGGGTTTGCTTGGATTCCCAAAGCTTACAGTTCAAACATAAACAGTATTAAATCCCCAATTCCTCCATTTCCATTCTTCTCATTCATAATCTTCAAATTTCTTCTTCTTCTGTCTCTCTCTAGGGTTCTTCTGAGAGAGACAGAGATGGCTGTTTTGAGGGCTTCTTGTTTTGGAATATATGCTGCTCTGCTTATTGCTGTCTTTTATGTTGTTGCGTTGCCTCTATCTTCAGCTCAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAGCTCCAACTAGTGATGGAACCGCAATAGACCAAGGAATAGCATACGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGAAAAAACAGAAGAACAATTACTATGAATTTCATTATTTTCAAGTCTGTGAGAGATGAAAGGAAAGAGGGTGTGGGGTTGTGTTATTCTATATATTTGCCATTTTTTCTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTGAAGCTTGGCAAAGGTTTCATTTGTAGAAAGTGATCTGTTGTATTTTGTATTATAATTTATTTATATATTTTTCATTCTTTTTTCTTGAATGTTCATTATTTTCCTTTCTGTACGTGTTCTTATTCTCCTAAACACACCCCCACCACAAGAAATTTACACCTCATTCATATTTCTATAAAGCTATATGTAAAACATCTGCAAGAAGAAACAAACCAACTTAAGTCGATCCGTTTCGTTCAGGATTCCAAAATTGTTCTAAAAGAACAAAATAAATAACACATTTTCATCCCTAATACATATTCCGAACAGAGTAATCTAAAATAACTTACTCTGCACTCAAGAAAAAACAAAATCATAGCATCTTTTCCTTTTCAATAATAAAACAAGTAAAAAGAAAAAAGAAAAACTAGATAGAAGCTAAGTCATATATATAGTAATTCATGTAGGAGCTAGTATAAAAAGCAAGTTTCAAAAACTTTATAGATTTATTTAATACAAATTTATGTAACATCATTAAGACTACTAAATCTATACTTTTATTCCTCCTTTTTAATGAAT

Coding sequence (CDS)

ATGGCTGTTTTGAGGGCTTCTTGTTTTGGAATATATGCTGCTCTGCTTATTGCTGTCTTTTATGTTGTTGCGTTGCCTCTATCTTCAGCTCAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAGCTCCAACTAGTGATGGAACCGCAATAGACCAAGGAATAGCATACGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGA

Protein sequence

MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVLTYIIH
BLAST of CsGy3G021250 vs. NCBI nr
Match: KGN57863.1 (hypothetical protein Csa_3G355060 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60
          MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML
Sbjct: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTYIIH
Sbjct: 61 VALVLTYIIH 70

BLAST of CsGy3G021250 vs. NCBI nr
Match: XP_008465391.1 (PREDICTED: arabinogalactan peptide 22 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 7.3e-12
Identity = 49/70 (70.00%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60
          MAVLRASCFGIYAA+LIAVFYV+AL +SS                DGT IDQGIAYVLML
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALSVSS---AELSSSPAPAPTSDGTTIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTYIIH
Sbjct: 61 VALVLTYIIH 67

BLAST of CsGy3G021250 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 0

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60
          MAVLRA CFGIY A++IA+FYVV LP+S                 DGTAIDQGIAY+LML
Sbjct: 1  MAVLRA-CFGIY-AVIIAIFYVVMLPVS---RAEHASSPAPAPTSDGTAIDQGIAYILML 60

Query: 61 VALVLTYIIH 71
          +AL LTYIIH
Sbjct: 61 LALALTYIIH 65

BLAST of CsGy3G021250 vs. NCBI nr
Match: XP_022968217.1 (arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60
          MA LRA CFG+Y A++IA+FYVV LP+ S       XXXXXXXXXDGTAIDQGIAY+LML
Sbjct: 21 MAALRA-CFGLY-AVIIAIFYVVMLPV-SRAEHASSXXXXXXXXXDGTAIDQGIAYILML 80

Query: 61 VALVLTYIIH 71
          +AL LTYIIH
Sbjct: 81 LALALTYIIH 87

BLAST of CsGy3G021250 vs. NCBI nr
Match: XP_022968216.1 (arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60
          MA LRA CFG+Y A++IA+FYVV LP+ S       XXXXXXXXXDGTAIDQGIAY+LML
Sbjct: 26 MAALRA-CFGLY-AVIIAIFYVVMLPV-SRAEHASSXXXXXXXXXDGTAIDQGIAYILML 85

Query: 61 VALVLTYIIH 71
          +AL LTYIIH
Sbjct: 86 LALALTYIIH 92

BLAST of CsGy3G021250 vs. TAIR10
Match: AT2G46330.1 (arabinogalactan protein 16)

HSP 1 Score: 44.7 bits (104), Expect = 2.8e-05
Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 0

Query: 46 DGTAIDQGIAYVLMLVALVLTYIIH 71
          DGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 38 DGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of CsGy3G021250 vs. TAIR10
Match: AT3G61640.1 (arabinogalactan protein 20)

HSP 1 Score: 44.7 bits (104), Expect = 2.8e-05
Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 0

Query: 46 DGTAIDQGIAYVLMLVALVLTYIIH 71
          DGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 38 DGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of CsGy3G021250 vs. TAIR10
Match: AT5G53250.1 (arabinogalactan protein 22)

HSP 1 Score: 43.9 bits (102), Expect = 4.7e-05
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0

Query: 46 DGTAIDQGIAYVLMLVALVLTYIIH 71
          DGT+IDQGIAYVLM+VAL LTY IH
Sbjct: 39 DGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of CsGy3G021250 vs. TAIR10
Match: AT5G24105.1 (arabinogalactan protein 41)

HSP 1 Score: 43.9 bits (102), Expect = 4.7e-05
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 9  FGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLMLVALVLTYI 68
          FG+  + ++++ + + LP++                 DGT IDQGIAYVLMLVALVLTY+
Sbjct: 8  FGV--STIVSIIFAILLPMA----HAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYL 63

Query: 69 IH 71
          IH
Sbjct: 68 IH 63

BLAST of CsGy3G021250 vs. Swiss-Prot
Match: sp|O82337|AGP16_ARATH (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.0e-04
Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 0

Query: 46 DGTAIDQGIAYVLMLVALVLTYIIH 71
          DGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 38 DGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of CsGy3G021250 vs. Swiss-Prot
Match: sp|Q9M373|AGP20_ARATH (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.0e-04
Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 0

Query: 46 DGTAIDQGIAYVLMLVALVLTYIIH 71
          DGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 38 DGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of CsGy3G021250 vs. Swiss-Prot
Match: sp|Q9FK16|AGP22_ARATH (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.5e-04
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0

Query: 46 DGTAIDQGIAYVLMLVALVLTYIIH 71
          DGT+IDQGIAYVLM+VAL LTY IH
Sbjct: 39 DGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of CsGy3G021250 vs. Swiss-Prot
Match: sp|Q8L9T8|AGP41_ARATH (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.5e-04
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 9  FGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLMLVALVLTYI 68
          FG+  + ++++ + + LP++                 DGT IDQGIAYVLMLVALVLTY+
Sbjct: 8  FGV--STIVSIIFAILLPMA----HAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYL 63

Query: 69 IH 71
          IH
Sbjct: 68 IH 63

BLAST of CsGy3G021250 vs. TrEMBL
Match: tr|A0A0A0L7T5|A0A0A0L7T5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.4e-16
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60
          MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML
Sbjct: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTYIIH
Sbjct: 61 VALVLTYIIH 70

BLAST of CsGy3G021250 vs. TrEMBL
Match: tr|A0A1S3CNS5|A0A1S3CNS5_CUCME (arabinogalactan peptide 22 OS=Cucumis melo OX=3656 GN=LOC103503022 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.9e-12
Identity = 49/70 (70.00%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60
          MAVLRASCFGIYAA+LIAVFYV+AL +SS                DGT IDQGIAYVLML
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALSVSS---AELSSSPAPAPTSDGTTIDQGIAYVLML 60

Query: 61 VALVLTYIIH 71
          VALVLTYIIH
Sbjct: 61 VALVLTYIIH 67

BLAST of CsGy3G021250 vs. TrEMBL
Match: tr|A0A251QPZ1|A0A251QPZ1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G306800 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-04
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSXXXXXXXXXXXXXXXXDGTAIDQGIAYVLML 60
          MAV+ AS FG+ A +L+  F+ V LP++                 DGTAIDQG+AYVLM+
Sbjct: 1  MAVINASSFGVVAIVLL--FFAVVLPMA----HATGLAPAPAPTSDGTAIDQGVAYVLMV 60

Query: 61 VALVLTYIIH 71
          +ALVLTY+IH
Sbjct: 61 LALVLTYLIH 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57863.11.4e-15100.00hypothetical protein Csa_3G355060 [Cucumis sativus][more]
XP_008465391.17.3e-1270.00PREDICTED: arabinogalactan peptide 22 [Cucumis melo][more]
XP_022945187.12.4e-0761.43arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala... [more]
XP_022968217.11.2e-0671.43arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima][more]
XP_022968216.11.2e-0671.43arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT2G46330.12.8e-0584.00arabinogalactan protein 16[more]
AT3G61640.12.8e-0584.00arabinogalactan protein 20[more]
AT5G53250.14.7e-0584.00arabinogalactan protein 22[more]
AT5G24105.14.7e-0543.55arabinogalactan protein 41[more]
Match NameE-valueIdentityDescription
sp|O82337|AGP16_ARATH5.0e-0484.00Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1[more]
sp|Q9M373|AGP20_ARATH5.0e-0484.00Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1[more]
sp|Q9FK16|AGP22_ARATH8.5e-0484.00Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1[more]
sp|Q8L9T8|AGP41_ARATH8.5e-0443.55Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0L7T5|A0A0A0L7T5_CUCSA9.4e-16100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1[more]
tr|A0A1S3CNS5|A0A1S3CNS5_CUCME4.9e-1270.00arabinogalactan peptide 22 OS=Cucumis melo OX=3656 GN=LOC103503022 PE=4 SV=1[more]
tr|A0A251QPZ1|A0A251QPZ1_PRUPE2.2e-0448.57Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G306800 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G021250.1CsGy3G021250.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan protein 16/20/22/41PFAMPF06376AGPcoord: 37..70
e-value: 1.8E-19
score: 69.1
IPR009424Arabinogalactan protein 16/20/22/41PANTHERPTHR33374FAMILY NOT NAMEDcoord: 1..70