CsGy3G021250.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGATTGTTTGAAGACAGTCATAAAACAGCCACAAGATTGGTGTAAAGGGTTCCAGCACAAAAGAAAAAAGAAGCCAAAAATAGTGAAGAAACTTTGCCAGCAAAGGATTGAGTTCCAGCACAATCAACTTAACAGTCTGTCTATCCAGCACAGCAAAAGCATAAAAAATAAGGAATCTTTACAAAGAGAGAATGCAAAATCACATGGGTTTGCTTGGATTCCCAAAGCTTACAGTTCAAACATAAACAGTATTAAATCCCCAATTCCTCCATTTCCATTCTTCTCATTCATAATCTTCAAATTTCTTCTTCTTCTGTCTCTCTCTAGGGTTCTTCTGAGAGAGACAGAGATGGCTGTTTTGAGGGCTTCTTGTTTTGGAATATATGCTGCTCTGCTTATTGCTGTCTTTTATGTTGTTGCGTTGCCTCTATCTTCAGCTCAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAGCTCCAACTAGTGATGGTTAGTTCTCTGTTCTTGGTTTTCTACTTTTTCTGTTTGTTTCTCGAGAAATTTTGTGGGAAAAAGATACAAAATCCAGAAAATGGGTTTCAAATTTAATTGGAAATAGGGATTGGGGAATTTGGATGGGATCCTTGTTTGAAAAAGAAACAAAATTTACCACTTTTCTCCCTCTAGAAGCTGCTATTTCTTTTTTTTTTTTTTTCTGTTGATTTCTTGAGAAATTTGCTGGGGGGAATGGGAGAGGAATATGAGAATGGCTTTGAAATTAAAACTCTCATCTTCATATCTACAAAGTTGAATCTCCTTAAATAATAAAATGGCCTCTGCTATTTTGAAGAAAAGAGTTCATTTCAAAGGCAAATTTGAGTTGCTGGAATTAGATGGGAACAGCAGAACTAACCTGAAAAAGAAGAACTTTTGTTGGTCTTTCACAGCCAACCACTAAGATTGGAATACAAAATCAACATTTTTCATCTTTCTGTCTTACCATTTTAGAACTTCTATTTTATTTCTTTAAAGAAAGGTTGCTCCGGTAGAACCCCAAAAATAACAATTGGGATTTGATATGTTGCAGGAACCGCAATAGACCAAGGAATAGCATACGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGAAAAAACAGAAGAACAATTACTATGAATTTCATTATTTTCAAGTCTGTGAGAGATGAAAGGAAAGAGGGTGTGGGGTTGTGTTATTCTATATATTTGCCATTTTTTCTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTGAAGCTTGGCAAAGGTTTCATTTGTAGAAAGTGATCTGTTGTATTTTGTATTATAATTTATTTATATATTTTTCATTCTTTTTTCTTGAATGTTCATTATTTTCCTTTCTGTACGTGTTCTTATTCTCCTAAACACACCCCCACCACAAGAAATTTACACCTCATTCATATTTCTATAAAGCTATATGTAAAACATCTGCAAGAAGAAACAAACCAACTTAAGTCGATCCGTTTCGTTCAGGATTCCAAAATTGTTCTAAAAGAACAAAATAAATAACACATTTTCATCCCTAATACATATTCCGAACAGAGTAATCTAAAATAACTTACTCTGCACTCAAGAAAAAACAAAATCATAGCATCTTTTCCTTTTCAATAATAAAACAAGTAAAAAGAAAAAAGAAAAACTAGATAGAAGCTAAGTCATATATATAGTAATTCATGTAGGAGCTAGTATAAAAAGCAAGTTTCAAAAACTTTATAGATTTATTTAATACAAATTTATGTAACATCATTAAGACTACTAAATCTATACTTTTATTCCTCCTTTTTAATGAAT CGATTGTTTGAAGACAGTCATAAAACAGCCACAAGATTGGTGTAAAGGGTTCCAGCACAAAAGAAAAAAGAAGCCAAAAATAGTGAAGAAACTTTGCCAGCAAAGGATTGAGTTCCAGCACAATCAACTTAACAGTCTGTCTATCCAGCACAGCAAAAGCATAAAAAATAAGGAATCTTTACAAAGAGAGAATGCAAAATCACATGGGTTTGCTTGGATTCCCAAAGCTTACAGTTCAAACATAAACAGTATTAAATCCCCAATTCCTCCATTTCCATTCTTCTCATTCATAATCTTCAAATTTCTTCTTCTTCTGTCTCTCTCTAGGGTTCTTCTGAGAGAGACAGAGATGGCTGTTTTGAGGGCTTCTTGTTTTGGAATATATGCTGCTCTGCTTATTGCTGTCTTTTATGTTGTTGCGTTGCCTCTATCTTCAGCTCAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAGCTCCAACTAGTGATGGAACCGCAATAGACCAAGGAATAGCATACGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGAAAAAACAGAAGAACAATTACTATGAATTTCATTATTTTCAAGTCTGTGAGAGATGAAAGGAAAGAGGGTGTGGGGTTGTGTTATTCTATATATTTGCCATTTTTTCTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTGAAGCTTGGCAAAGGTTTCATTTGTAGAAAGTGATCTGTTGTATTTTGTATTATAATTTATTTATATATTTTTCATTCTTTTTTCTTGAATGTTCATTATTTTCCTTTCTGTACGTGTTCTTATTCTCCTAAACACACCCCCACCACAAGAAATTTACACCTCATTCATATTTCTATAAAGCTATATGTAAAACATCTGCAAGAAGAAACAAACCAACTTAAGTCGATCCGTTTCGTTCAGGATTCCAAAATTGTTCTAAAAGAACAAAATAAATAACACATTTTCATCCCTAATACATATTCCGAACAGAGTAATCTAAAATAACTTACTCTGCACTCAAGAAAAAACAAAATCATAGCATCTTTTCCTTTTCAATAATAAAACAAGTAAAAAGAAAAAAGAAAAACTAGATAGAAGCTAAGTCATATATATAGTAATTCATGTAGGAGCTAGTATAAAAAGCAAGTTTCAAAAACTTTATAGATTTATTTAATACAAATTTATGTAACATCATTAAGACTACTAAATCTATACTTTTATTCCTCCTTTTTAATGAAT ATGGCTGTTTTGAGGGCTTCTTGTTTTGGAATATATGCTGCTCTGCTTATTGCTGTCTTTTATGTTGTTGCGTTGCCTCTATCTTCAGCTCAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAGCTCCAACTAGTGATGGAACCGCAATAGACCAAGGAATAGCATACGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGA MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLMLVALVLTYIIH
BLAST of CsGy3G021250.1 vs. NCBI nr
Match: KGN57863.1 (hypothetical protein Csa_3G355060 [Cucumis sativus]) HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. NCBI nr
Match: XP_008465391.1 (PREDICTED: arabinogalactan peptide 22 [Cucumis melo]) HSP 1 Score: 79.0 bits (193), Expect = 7.3e-12 Identity = 49/70 (70.00%), Postives = 52/70 (74.29%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07 Identity = 43/70 (61.43%), Postives = 49/70 (70.00%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. NCBI nr
Match: XP_022968217.1 (arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06 Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. NCBI nr
Match: XP_022968216.1 (arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06 Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. TAIR10
Match: AT2G46330.1 (arabinogalactan protein 16) HSP 1 Score: 44.7 bits (104), Expect = 2.8e-05 Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. TAIR10
Match: AT3G61640.1 (arabinogalactan protein 20) HSP 1 Score: 44.7 bits (104), Expect = 2.8e-05 Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. TAIR10
Match: AT5G53250.1 (arabinogalactan protein 22) HSP 1 Score: 43.9 bits (102), Expect = 4.7e-05 Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. TAIR10
Match: AT5G24105.1 (arabinogalactan protein 41) HSP 1 Score: 43.9 bits (102), Expect = 4.7e-05 Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. Swiss-Prot
Match: sp|O82337|AGP16_ARATH (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 5.0e-04 Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. Swiss-Prot
Match: sp|Q9M373|AGP20_ARATH (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 5.0e-04 Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. Swiss-Prot
Match: sp|Q9FK16|AGP22_ARATH (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1) HSP 1 Score: 43.9 bits (102), Expect = 8.5e-04 Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. Swiss-Prot
Match: sp|Q8L9T8|AGP41_ARATH (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1) HSP 1 Score: 43.9 bits (102), Expect = 8.5e-04 Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. TrEMBL
Match: tr|A0A0A0L7T5|A0A0A0L7T5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 9.4e-16 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. TrEMBL
Match: tr|A0A1S3CNS5|A0A1S3CNS5_CUCME (arabinogalactan peptide 22 OS=Cucumis melo OX=3656 GN=LOC103503022 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 4.9e-12 Identity = 49/70 (70.00%), Postives = 52/70 (74.29%), Query Frame = 0
BLAST of CsGy3G021250.1 vs. TrEMBL
Match: tr|A0A251QPZ1|A0A251QPZ1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G306800 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 2.2e-04 Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
|